ViewGene
Locus Name:
GeneID:
Location:

GeneID:683
TrivialName: PA14_36570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36570
PAO1 Ortholog Locus:PA2165
Sequence Length:1542
Protein Length:513
Start: 3253507
Stop: 3255048
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05553.1|AE004643_6 (AE004643) probable glycogen synthase [Pseudomonas aeruginosa PAO1]
Identities = 510/513 (99%), Positives = 510/513 (99%)
Sequence:
ATGGGACATTCTGTTGCAGGCGCTTGCCTGGAAGAACCCGCGGTACTGACCGCTTTTCCGTCGCTGCTGCAC
CCGCAGGACCCGCCGCAACAGAGGGATCGGATACTCTTCGTCACCGCCGAGCTAAGCGACTTCGTCAAGGTC
GGCGGACTCGGCGACTTTTCCGCCGCGCTGCCGCGGGTCCTCAAGCGCGAGCATTCGGTGCGGGTCCTGCTG
CCCGGCTACCGCCAGGTGCTGGAGCGCTGCCGCGACCTGCGGATCATCGGCAGCCTGCCCGGCCGGGCGGCG
ATCCCGCCCTGCGAGATCGGCCTGGTGACCCTCGACGACGGCCTGGAAGTCATGCTGGTGCTCTGCCCGCTG
CTCTACGAGCGCGAGGGCACGCCATACATGGACGACCAGGGCAATGACTGGCCGGACAACCACCTGCGCTTC
GCCCGCCTGTGCCTGGCCGCCGCCGAGATCGCCGGCGGCCGCGGCGCCCAGGGCTGGCAGCCGGGCCTGGTG
CACGCCAATGACTGGCCGTCGGCGCTGACCCCGGCCTACATGGCCTGGAACGGCGTGCGCACGCCGAGCCTG
TTCACCATCCACAACCTCGCCTACCAGGGCCTCTGCGACCTGCAATGCAGCGCCGAGCTGGGTCTTCCCGAC
GAAGCGCTGAGCCACGAAAGCATGGAATTCCACGGGCGCCTGTCGTTCCTCAAGGCCGGCATCGCCCATGCC
CACCACATCACCACGGTGAGCGAGACCTACGCCCAGGAAATCACTACCCCGGAATACGGCTGCGGCCTGCAC
GGCATCCTCAAGTGCAAGGTCGAGAAGCGTCAGCTCAGCGGCATCGTCAACGGTATCGACGATAGCTGGCAG
CCGCACTGCGATCCACACCTGGTGGCCGGCTTCAGCGCCCGCCAATGGGCCGGCAAGCGCGCCAACACGCGC
TACGTGGAGGAGCGTTTCGGCCTGGAGCCGGGCAAGGGGCCGCTGTTCGCGGTGGTCTCGCGCCTGGTGCAG
CAGAAAGGCATCGACCTGACCCTGGAGATCAGCGATGCCCTGCTCCAGGCCGGCGGCCGCCTGGTCAGCATC
GGCCGTGGCGAGCCGAACCTGGAGAAGGCCATGCTCGAGCTCGCCCGGCGTCATCCCGGCCAGGTCGGCGTG
CATATCGGTTTCGACGAGACCGAGGCCCGCCGTATCTACGCCGGCAGCGACTTCCTGCTCATGCCCTCGCGT
TACGAGCCCTGCGGGCTCAGTCAGCTCTATGCGCAATGTTTCGGCTCGCTGCCGATCGCGCGCTGCACCGGC
GGCCTCGCCGATACCATCGTCGACGGGGTCACCGGCTTCCTGTTCCGTGAGGAAACCGCGCAGAGCTACCTC
GACGCGGTGATGCGCGCGATCAACGTCTACCACTGTCCCTCACTGCTCAACGCCATGCGCTGCAAGGCGATG
GCCGCGCCGATGTTCTGGAGCGACTCGGTGGAGCCTTACAACCGCCTGTACCGGCGCCTGTTGAGGAATACC
GCTCCGGCCCTGCGCGGGGTACGCCAATGA
Translation:
MGHSVAGACLEEPAVLTAFPSLLHPQDPPQQRDRILFVTAELSDFVKVGGLGDFSAALPRVLKREHSVRVLL
PGYRQVLERCRDLRIIGSLPGRAAIPPCEIGLVTLDDGLEVMLVLCPLLYEREGTPYMDDQGNDWPDNHLRF
ARLCLAAAEIAGGRGAQGWQPGLVHANDWPSALTPAYMAWNGVRTPSLFTIHNLAYQGLCDLQCSAELGLPD
EALSHESMEFHGRLSFLKAGIAHAHHITTVSETYAQEITTPEYGCGLHGILKCKVEKRQLSGIVNGIDDSWQ
PHCDPHLVAGFSARQWAGKRANTRYVEERFGLEPGKGPLFAVVSRLVQQKGIDLTLEISDALLQAGGRLVSI
GRGEPNLEKAMLELARRHPGQVGVHIGFDETEARRIYAGSDFLLMPSRYEPCGLSQLYAQCFGSLPIARCTG
GLADTIVDGVTGFLFREETAQSYLDAVMRAINVYHCPSLLNAMRCKAMAAPMFWSDSVEPYNRLYRRLLRNT
APALRGVRQ*
AnnotationID:692GeneID:683
AnnotatorUID: danlee
Modification Date/Time: 2006-03-13 12:12:47
Gene Name:
Confidence Code:3
GeneProduct:glycogen synthase
Cell Localization:()
Synonyms:PA2165, glgA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0297
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69640.1|AE016598_1 (AE016789) glycogen synthase [Pseudomonas putida KT2440]
          Length = 519

 Score =  602 bits (1552), Expect = e-171
 Identities = 292/479 (60%), Positives = 359/479 (74%), Gaps = 1/479 (0%)

>gb|AAM39726.1| (AE012138) glycogen synthase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 474

 Score =  501 bits (1290), Expect = e-141
 Identities = 249/476 (52%), Positives = 327/476 (68%), Gaps = 3/476 (0%)








 
Structural Features:
COG0297, GlgA, Glycogen synthase [Carbohydrate transport and metabolism]
CD-Length = 487 residues,  99.2% aligned
Score =  500 bits (1290), Expect = 1e-142
Identities = 226/491 (46%), Positives = 292/491 (59%), Gaps = 26/491 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1369




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18511




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32564




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:683_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:683
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1158
                           PA2165_tr
                           translation of PA2165
                           513
                           99.41
                           99.41
                           0
                           2698.0
     

     
     
42586
                           gb|AAG05553.1|AE004643_6
                           (AE004643) probable glycogen synthase [Pseudomonas aeruginosa PAO1]
                           513
                           99.41
                           99.41
                           0
                           2698.0
     

     
     
42587
                           gb|AAN69640.1|AE016598_1
                           (AE016789) glycogen synthase [Pseudomonas putida KT2440]
                           529
                           56.33
                           69.56
                           26
                           1540.0
     

     
     
42588
                           gb|AAO56612.1|
                           (AE016867) glycogen synthase [Pseudomonas syringae pv. tomato str. DC3000]
                           513
                           55.94
                           68.61
                           29
                           1535.0
     

     
     
42589
                           gb|AAM39726.1|
                           (AE012138) glycogen synthase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           513
                           48.53
                           63.74
                           39
                           1293.0
     

     






      

          
GC ORFID: 43685How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2165Glimmer Score: 

          
Start: 1700408Stop: 1698867

          
Length: 1542


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2165 translation of PA2165Homolog Bit Score 1043.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7218 (ORF: BLASTX 600.0), t_PA2165 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGACATTCTGTTGCAGGCGCTTGCCTGGAAGAACCCGCGGTACTGACCGCTTTTCCGTCGCTGCTGCAC 
CCGCAGGACCCGCCGCAACAGAGGGATCGGATACTCTTCGTCACCGCCGAGCTAAGCGACTTCGTCAAGGTC 
GGCGGACTCGGCGACTTTTCCGCCGCGCTGCCGCGGGTCCTCAAGCGCGAGCATTCGGTGCGGGTCCTGCTG 
CCCGGCTACCGCCAGGTGCTGGAGCGCTGCCGCGACCTGCGGATCATCGGCAGCCTGCCCGGCCGGGCGGCG 
ATCCCGCCCTGCGAGATCGGCCTGGTGACCCTCGACGACGGCCTGGAAGTCATGCTGGTGCTCTGCCCGCTG 
CTCTACGAGCGCGAGGGCACGCCATACATGGACGACCAGGGCAATGACTGGCCGGACAACCACCTGCGCTTC 
GCCCGCCTGTGCCTGGCCGCCGCCGAGATCGCCGGCGGCCGCGGCGCCCAGGGCTGGCAGCCGGGCCTGGTG 
CACGCCAATGACTGGCCGTCGGCGCTGACCCCGGCCTACATGGCCTGGAACGGCGTGCGCACGCCGAGCCTG 
TTCACCATCCACAACCTCGCCTACCAGGGCCTCTGCGACCTGCAATGCAGCGCCGAGCTGGGTCTTCCCGAC 
GAAGCGCTGAGCCACGAAAGCATGGAATTCCACGGGCGCCTGTCGTTCCTCAAGGCCGGCATCGCCCATGCC 
CACCACATCACCACGGTGAGCGAGACCTACGCCCAGGAAATCACTACCCCGGAATACGGCTGCGGCCTGCAC 
GGCATCCTCAAGTGCAAGGTCGAGAAGCGTCAGCTCAGCGGCATCGTCAACGGTATCGACGATAGCTGGCAG 
CCGCACTGCGATCCACACCTGGTGGCCGGCTTCAGCGCCCGCCAATGGGCCGGCAAGCGCGCCAACACGCGC 
TACGTGGAGGAGCGTTTCGGCCTGGAGCCGGGCAAGGGGCCGCTGTTCGCGGTGGTCTCGCGCCTGGTGCAG 
CAGAAAGGCATCGACCTGACCCTGGAGATCAGCGATGCCCTGCTCCAGGCCGGCGGCCGCCTGGTCAGCATC 
GGCCGTGGCGAGCCGAACCTGGAGAAGGCCATGCTCGAGCTCGCCCGGCGTCATCCCGGCCAGGTCGGCGTG 
CATATCGGTTTCGACGAGACCGAGGCCCGCCGTATCTACGCCGGCAGCGACTTCCTGCTCATGCCCTCGCGT 
TACGAGCCCTGCGGGCTCAGTCAGCTCTATGCGCAATGTTTCGGCTCGCTGCCGATCGCGCGCTGCACCGGC 
GGCCTCGCCGATACCATCGTCGACGGGGTCACCGGCTTCCTGTTCCGTGAGGAAACCGCGCAGAGCTACCTC 
GACGCGGTGATGCGCGCGATCAACGTCTACCACTGTCCCTCACTGCTCAACGCCATGCGCTGCAAGGCGATG 
GCCGCGCCGATGTTCTGGAGCGACTCGGTGGAGCCTTACAACCGCCTGTACCGGCGCCTGTTGAGGAATACC 
GCTCCGGCCCTGCGCGGGGTACGCCAATGA