ViewGene
Locus Name:
GeneID:
Location:

GeneID:6823
TrivialName: PA14_65870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65870
PAO1 Ortholog Locus:
Sequence Length:777
Protein Length:258
Start: 5869701
Stop: 5868925
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN69325.1|AE016570_2 (AE016788) periplasmic amino acid-binding protein-related protein [Pseudomonas putida KT2440]
Identities = 157/241 (65%), Positives = 187/241 (77%)
Sequence:
ATGCAGGCCCGCTGGCTGGCGCTCTGCGGATGGCTGCTGGGCGGCCTGGCACAGGCTGCGGAGACCATCCGC
TATTGCGACTATCCGGTATACCCGCCGATCTCCTGGAGCGATGGCCAGCAGGTCCGGGGGCTGGCGCCGGAG
CTGGTGAAGCGGCTGTTCGGCGCGCTGGGCTACCGGGTCGAGGTGGTGGTGCTGGGCAACTGGCGGCGCTGC
CTGCTGGACGCCGCCGCCGGACGGGTCGACCTGGTACTGGCCTACCGCACGCCCGCGCGCGATCGCGACCTG
GCGTTTTCCGCCGAGCCGGTGCTGCGCGAGGAGGTGGCGATCTTCTACAACCGCCAGCGGCCGGTGCGCATC
CGATCCCTCGGCGACCTCGCCGGCTATCGCGGCGGGCTGTTGTTCGGCGAAAGCTACGGGGCGGACTTCGAC
CGCTTCGTCGGCCGCCACGGCAACGTCGAATGGGTTTCCGACAGCCGACAGAACTTCGGCAAGCTGGTGCGC
CAGCGCATCGACTACATTGCCCACGAACGCCGCACCGGCACGCTGTTCGCCGAGCGCCTGGCCGGCGGCGAG
AACATCCGTGCGCTGCCTGAACCGCTGACGGTGGACTACCTGCGGGTGGCGGTCTCGCGGCACTCGCCGCTG
GCAGCGAAGATGGACGAGATCGACCGGGCCCTGCGAGGCTATCGCGACGACGGCAGCATCCAGCGTTGGCTG
GACGACAGCGTGCGCGACTATCGGCGCCTCGCCGGCAACCGCGCGGACGCCTGGTGA
Translation:
MQARWLALCGWLLGGLAQAAETIRYCDYPVYPPISWSDGQQVRGLAPELVKRLFGALGYRVEVVVLGNWRRC
LLDAAAGRVDLVLAYRTPARDRDLAFSAEPVLREEVAIFYNRQRPVRIRSLGDLAGYRGGLLFGESYGADFD
RFVGRHGNVEWVSDSRQNFGKLVRQRIDYIAHERRTGTLFAERLAGGENIRALPEPLTVDYLRVAVSRHSPL
AAKMDEIDRALRGYRDDGSIQRWLDDSVRDYRRLAGNRADAW*
AnnotationID:6824GeneID:6823
AnnotatorUID: danlee
Modification Date/Time: 2006-03-21 12:12:11
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84323673|ref|ZP_00971741.1|  COG0834: ABC-type amino acid transport/signal transduction systems, 
periplasmic component/domain [Pseudomonas aeruginosa 
2192]
Length=258

 Score =  489 bits (1258),  Expect = 5e-137, Method: Composition-based stats.
 Identities = 255/258 (98%), Positives = 257/258 (99%), Gaps = 0/258 (0%)

gi|84317574|ref|ZP_00966013.1|  COG0834: ABC-type amino acid transport/signal transduction systems, 
periplasmic component/domain [Pseudomonas aeruginosa 
C3719]
Length=258







 
Structural Features:
smart00062, PBPb, Bacterial periplasmic substrate-binding proteins
CD-Length = 222 residues,  99.5% aligned
Score = 80.0 bits (197), Expect = 2e-16

COG0834, HisJ, ABC-type amino acid transport/signal transduction systems, 
periplasmic component/domain 
[Amino acid transport and metabolism / Signal transduction mechanisms]
CD-Length = 275 residues,  78.5% aligned
Score = 63.5 bits (153), Expect = 2e-11

pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.
CD-Length = 224 residues,  92.9% aligned
Score = 58.4 bits (141), Expect = 9e-10
Identities = 45/214 (21%), Positives = 90/214 (42%), Gaps = 12/214 (5%)

cd00134, PBPb, Bacterial periplasmic transport system
CD-Length = 218 residues,  95.0% aligned
Score = 64.6 bits (157), Expect = 1e-11







   
Genomic Context:






   
Comment:
This ORF is present in PAO1, but overlaps with the N-terminus of PA4982 and was likely ommitted from annotation.


















    ReferenceID:13364




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30729




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35067




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6823_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6823
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
202646
                           gb|AAN69325.1|AE016570_2
                           (AE016788) periplasmic amino acid-binding protein-related protein [Pseudomonas putida KT2440]
                           260
                           62.30
                           74.23
                           2
                           824.0
     

     






      

          
GC ORFID: 49825How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5133384Stop: 5132608

          
Length: 777


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCAGGCCCGCTGGCTGGCGCTCTGCGGATGGCTGCTGGGCGGCCTGGCACAGGCTGCGGAGACCATCCGC 
TATTGCGACTATCCGGTATACCCGCCGATCTCCTGGAGCGATGGCCAGCAGGTCCGGGGGCTGGCGCCGGAG 
CTGGTGAAGCGGCTGTTCGGCGCGCTGGGCTACCGGGTCGAGGTGGTGGTGCTGGGCAACTGGCGGCGCTGC 
CTGCTGGACGCCGCCGCCGGACGGGTCGACCTGGTACTGGCCTACCGCACGCCCGCGCGCGATCGCGACCTG 
GCGTTTTCCGCCGAGCCGGTGCTGCGCGAGGAGGTGGCGATCTTCTACAACCGCCAGCGGCCGGTGCGCATC 
CGATCCCTCGGCGACCTCGCCGGCTATCGCGGCGGGCTGTTGTTCGGCGAAAGCTACGGGGCGGACTTCGAC 
CGCTTCGTCGGCCGCCACGGCAACGTCGAATGGGTTTCCGACAGCCGACAGAACTTCGGCAAGCTGGTGCGC 
CAGCGCATCGACTACATTGCCCACGAACGCCGCACCGGCACGCTGTTCGCCGAGCGCCTGGCCGGCGGCGAG 
AACATCCGTGCGCTGCCTGAACCGCTGACGGTGGACTACCTGCGGGTGGCGGTCTCGCGGCACTCGCCGCTG 
GCAGCGAAGATGGACGAGATCGACCGGGCCCTGCGAGGCTATCGCGACGACGGCAGCATCCAGCGTTGGCTG 
GACGACAGCGTGCGCGACTATCGGCGCCTCGCCGGCAACCGCGCGGACGCCTGGTGA