ViewGene

Locus Name:
GeneID:
Location:

GeneID:6822
TrivialName: PA14_65860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65860
PAO1 Ortholog Locus:
Sequence Length:2313
Protein Length:770
Start: 5868988
Stop: 5866676
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08367.1|AE004911_2 (AE004911) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 759/770 (98%), Positives = 762/770 (98%)
Sequence:
TTGGCTGGACGACAGCGTGCGCGACTATCGGCGCCTCGCCGGCAACCGCGCGGACGCCTGGTGAGCGGCCGC
GGCGGAGTGTTGGCGCGGCGCCTGCTGTGGCGGGTGCTGCTGTTCAGCCTGTGTTTCACTGTCCTCGCCGGC
GCCGTGCAGCTGTTCTTCGAATACCGCCGCGAAATGCGTGAGATCGAGGCGCGCCTGGAACTGATCCGCAGC
GGCTACCTGGCCAGCTTCGAGCGCAGCCTGTGGGATCTCAACCAGGAGCAGTTGAACGTGCAGTTGCGCGGC
CTCGGGGATTTCCCCGACATCGCCCGTGTCAGTCTGCAAAGCGCCGACTTCAACCTGCTGCAGGGCGACCAG
CGTCCACGCGGCCTGCTGCGGGTCGAGCGCTTTCCCTTGAGCTACCAGCCGCCGGGGGGCGAGCGTCGGCAT
CTGGGCGAGCTGGAGATCGCCATCGACCTGGCGGCGGTCTATCGCCGGCTGGCCTCCGGCGGCCTGGCCAGC
CTCTTGTGGATGGGCAGTTTCCTTTGCGGCCTGGCGGTGGCCCTCAGTTGGCTGTTCCACAGCCTGGTCACT
CGCCATCTGTGGCGCATGTCCGAGTTCGCTGGGCATATCGCCGAAGGCGACCTGCAACAGCCGCTGCGACTG
GACAAGGCGGACCGCGAACGCGACGAGATCGACGCCGTCGCCGCCGCCCTGGAGGACATGCGCCAGGCCCTG
CGCACCGATCGCCGCCGGCGCGACGCTGACCGCGACGAGTTGCGTCGGCAGGTCGAGCGGCGCACCGCCAGC
CTGCGCCGGGCGAAGGACCAGGCGGAAGCCGCCGACCGTGCCAAGAGCCGTTTCCTCGCGACCATGAGCCAT
GAGATCCGTACCCCGCTGAACGGCATCCTGGGCATGGCCGAGCTGCTGCGCGAGGCATCGCTCGGCGAGCGT
GACCGCCAGCGCCTGCGGGCACTGGCGACAGCGGGGGAGGGACTGCTGGCGATCCTCAACGAGGTCCTCCAC
TTCGCCCGGCTGGAGGAAGCGGCGGATGTGCCGGAAGCGGTGGACTTTTCCTTGCGGAGCCTGCTCGAGGAC
GTCCTCACCCTGCTCGAACCGCGGGCGCGGGAGAACGCCACGCGGCTGGACCTGTGGCTGGACCCGCAGGTT
CATGACGGCCATCGCGGCGCCGAGCAGTTCCTGCGCCAGGTGTTGACCAACCTGCTGGGCAACGCGGTGAAG
TTCACCGAGGCCGGCGAGGTGCGCGTTCGCGTCGAGCGGCTGGCGCGCAGCGCAGGAAGCGAGCGCCTGCGG
CTGAGCGTCGCGGACGATGGAATCGGCATTCCCGAGGAAATGCGCGAACGCATCTTCGAACGCTTCACCCAG
GGCGGCGACGCCGTGACCCGCCGTTACGGCGGAACCGGCCTGGGCCTGGCGATCAGCAAGCGGCTGGTGGAA
GCGCTGGGCGGGCGGATCGGCGTGGAAAGCCGGGTCGGCCAGGGCAGTACGTTCTGGTTCGAGATCGAGCTG
GCGCTGGCGAGCTTGTCCGGCGCGACGCCGCCGGCGGCATCGGTGTCTGCGCTGGAGGTGCTGCTGGTGGAG
GACGTGGCGCTCAACCGCGAGGTAGCCCAGGGCCTGCTCGAGCGGGACGGCCACCGGGTGATGCTGGCCGAG
GACGCGGGGCCGGCCCTGGCGCTGTGCCGGCAGCGGCGCTTCGACCTGATCCTGCTGGACATGCACCTGCCG
GGGATGGCTGGCCTCGAGCTTTGCGCCGGGATTCGCCGGCAGCTCGACGGCCTGAACCGCGCCACGCCGGTC
TTCGCCTTCACCGCCAGCATCCAGCCGGACATGGTGCGTCGGTACTTCGCCGCGGGCATGCAGGGCGTGCTC
GGCAAGCCCCTGCGGATGGACGAGCTGCGCCGCGCGCTGGGCGAGGTCGGAACCGGCGTGCCTGCGCTTGCG
GCGGACGCCGCGCTGGACCGGCAAATGCTCGAGACCCACCGCCGCCTGCTGGGGCGGCACAAGCTCGCCGGA
CTGCTGGGCAACCTGCTGGGAAGCCTgGACGAGCAGTTGCCGCTGCTGGCCGAAGCCCTGGACCAGGTGGAC
CTGGCCGAGGCGGCGAACATCGCCCATCGCCTGTCCGGAAGCTGCCACTCCATGGGCCTGGTGGCGCTCGGC
GCCGGCCTGGGCGAGCTGGAGCGCGAGGCCCTGGGCGCGGCCGGGGTCGACCCGCGAGCCTGGGGCGCACGC
CTGGGTAGCCTGCGCCGCGACGGCGCAGAAGCCCTGCGCCGCGCCGGCTTCCTCGGCGAAGCCGACTCAGCG
GCCGGTTGA
Translation:
MAGRQRARLSAPRRQPRGRLVSGRGGVLARRLLWRVLLFSLCFTVLAGAVQLFFEYRREMREIEARLELIRS
GYLASFERSLWDLNQEQLNVQLRGLGDFPDIARVSLQSADFNLLQGDQRPRGLLRVERFPLSYQPPGGERRH
LGELEIAIDLAAVYRRLASGGLASLLWMGSFLCGLAVALSWLFHSLVTRHLWRMSEFAGHIAEGDLQQPLRL
DKADRERDEIDAVAAALEDMRQALRTDRRRRDADRDELRRQVERRTASLRRAKDQAEAADRAKSRFLATMSH
EIRTPLNGILGMAELLREASLGERDRQRLRALATAGEGLLAILNEVLHFARLEEAADVPEAVDFSLRSLLED
VLTLLEPRARENATRLDLWLDPQVHDGHRGAEQFLRQVLTNLLGNAVKFTEAGEVRVRVERLARSAGSERLR
LSVADDGIGIPEEMRERIFERFTQGGDAVTRRYGGTGLGLAISKRLVEALGGRIGVESRVGQGSTFWFEIEL
ALASLSGATPPAASVSALEVLLVEDVALNREVAQGLLERDGHRVMLAEDAGPALALCRQRRFDLILLDMHLP
GMAGLELCAGIRRQLDGLNRATPVFAFTASIQPDMVRRYFAAGMQGVLGKPLRMDELRRALGEVGTGVPALA
ADAALDRQMLETHRRLLGRHKLAGLLGNLLGSLDEQLPLLAEALDQVDLAEAANIAHRLSGSCHSMGLVALG
AGLGELEREALGAAGVDPRAWGARLGSLRRDGAEALRRAGFLGEADSAAG*
AnnotationID:6823GeneID:6822
AnnotatorUID: danlee
Modification Date/Time: 2006-03-21 12:12:31
Gene Name:
Confidence Code:3
GeneProduct:putative sensor histidine kinase/response regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|9951266|gb|AAG08367.1|  probable two-component sensor [Pseudomonas aeruginosa PAO1]
 gi|15600175|ref|NP_253669.1|  probable two-component sensor [Pseudomonas aeruginosa PAO1]
Length=998

 Score = 1253 bits (3241),  Expect = 0.0, Method: Composition-based stats.
 Identities = 759/770 (98%), Positives = 762/770 (98%), Gaps = 0/770 (0%)

gi|84317575|ref|ZP_00966014.1|  COG0642: Signal transduction histidine kinase [Pseudomonas aeruginosa 
C3719]
Length=750

 Score = 1210 bits (3131),  Expect = 0.0, Method: Composition-based stats.
 Identities = 738/750 (98%), Positives = 741/750 (98%), Gaps = 0/750 (0%)

gi|84323674|ref|ZP_00971742.1|  COG0642: Signal transduction histidine kinase [Pseudomonas aeruginosa 
2192]
Length=750

 Score = 1205 bits (3117),  Expect = 0.0, Method: Composition-based stats.
 Identities = 737/750 (98%), Positives = 741/750 (98%), Gaps = 0/750 (0%)

Structural Features:
COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].
             CD-Length = 336 residues, only  71.1% aligned
             Score =  152 bits (384), Expect = 2e-37

COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].
             CD-Length = 890 residues, only  28.1% aligned
             Score =  133 bits (336), Expect = 7e-32

COG5002, VicK, Signal transduction histidine kinase [Signal transduction mechanisms].
             CD-Length = 459 residues, only  49.2% aligned
             Score =  121 bits (305), Expect = 3e-28
Genomic Context:
Comment:
Similar in length to genes from P. aeruginosa strains 2192 and C3719, but lacking the 
N-terminal 221 amino acids of PAO1 PA4982.
In place of PA4982 N-terminus, PA14 (and strains  2192 and C3719) have GID6823 (PA14_65870).
ReferenceID:16576
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30727
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35107
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:6822_cdd.html
URL:
Homologs By Global Alignment
Gene ID:6822

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
8038 PA4982_tr translation of PA4982 998 76.15 76.35 228 3803.0
202628 gb|AAG08367.1|AE004911_2 (AE004911) probable two-component sensor [Pseudomonas aeruginosa PAO1] 998 76.15 76.35 228 3803.0
202629 gb|AAN69324.1|AE016570_1 (AE016788) sensor histidine kinase/response regulator [Pseudomonas putida KT2440] 789 55.76 67.55 58 2037.0
202632 gb|AAK25153.1| (AE005982) sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] 876 25.22 32.99 340 621.0
202638 gb|AAM35383.1| (AE011676) two-component system sensor protein [Xanthomonas axonopodis pv. citri str. 306] 977 23.95 32.13 415 676.0
GC ORFID: 49824How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 5132671Stop: 5130359
Length: 2313
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4982 translation of PA4982Homolog Bit Score 1469.0
Other Homologs: t_PA4982 translation of PA4982 (BLASTP 1469), t_PA2583 translation of PA2583 (BLASTP 220), t_PA3462 translation of PA3462 (BLASTP 217), psyr_15may02_Scaffold7_revised_gene7293 related to: gi|15599307|ref|NP_252801.1| (NC_002516) probable sensor/response regulator hybrid [Pseudomonas aeruginosa] pir||H83132 probable sensor/response regulator hybrid PA4112 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG07499.1|AE004827_8 (A-TRUNCATED- (BLASTP 201)
GC ORF Sequence
TTGGCTGGACGACAGCGTGCGCGACTATCGGCGCCTCGCCGGCAACCGCGCGGACGCCTGGTGAGCGGCCGC
GGCGGAGTGTTGGCGCGGCGCCTGCTGTGGCGGGTGCTGCTGTTCAGCCTGTGTTTCACTGTCCTCGCCGGC
GCCGTGCAGCTGTTCTTCGAATACCGCCGCGAAATGCGTGAGATCGAGGCGCGCCTGGAACTGATCCGCAGC
GGCTACCTGGCCAGCTTCGAGCGCAGCCTGTGGGATCTCAACCAGGAGCAGTTGAACGTGCAGTTGCGCGGC
CTCGGGGATTTCCCCGACATCGCCCGTGTCAGTCTGCAAAGCGCCGACTTCAACCTGCTGCAGGGCGACCAG
CGTCCACGCGGCCTGCTGCGGGTCGAGCGCTTTCCCTTGAGCTACCAGCCGCCGGGGGGCGAGCGTCGGCAT
CTGGGCGAGCTGGAGATCGCCATCGACCTGGCGGCGGTCTATCGCCGGCTGGCCTCCGGCGGCCTGGCCAGC
CTCTTGTGGATGGGCAGTTTCCTTTGCGGCCTGGCGGTGGCCCTCAGTTGGCTGTTCCACAGCCTGGTCACT
CGCCATCTGTGGCGCATGTCCGAGTTCGCTGGGCATATCGCCGAAGGCGACCTGCAACAGCCGCTGCGACTG
GACAAGGCGGACCGCGAACGCGACGAGATCGACGCCGTCGCCGCCGCCCTGGAGGACATGCGCCAGGCCCTG
CGCACCGATCGCCGCCGGCGCGACGCTGACCGCGACGAGTTGCGTCGGCAGGTCGAGCGGCGCACCGCCAGC
CTGCGCCGGGCGAAGGACCAGGCGGAAGCCGCCGACCGTGCCAAGAGCCGTTTCCTCGCGACCATGAGCCAT
GAGATCCGTACCCCGCTGAACGGCATCCTGGGCATGGCCGAGCTGCTGCGCGAGGCATCGCTCGGCGAGCGT
GACCGCCAGCGCCTGCGGGCACTGGCGACAGCGGGGGAGGGACTGCTGGCGATCCTCAACGAGGTCCTCCAC
TTCGCCCGGCTGGAGGAAGCGGCGGATGTGCCGGAAGCGGTGGACTTTTCCTTGCGGAGCCTGCTCGAGGAC
GTCCTCACCCTGCTCGAACCGCGGGCGCGGGAGAACGCCACGCGGCTGGACCTGTGGCTGGACCCGCAGGTT
CATGACGGCCATCGCGGCGCCGAGCAGTTCCTGCGCCAGGTGTTGACCAACCTGCTGGGCAACGCGGTGAAG
TTCACCGAGGCCGGCGAGGTGCGCGTTCGCGTCGAGCGGCTGGCGCGCAGCGCAGGAAGCGAGCGCCTGCGG
CTGAGCGTCGCGGACGATGGAATCGGCATTCCCGAGGAAATGCGCGAACGCATCTTCGAACGCTTCACCCAG
GGCGGCGACGCCGTGACCCGCCGTTACGGCGGAACCGGCCTGGGCCTGGCGATCAGCAAGCGGCTGGTGGAA
GCGCTGGGCGGGCGGATCGGCGTGGAAAGCCGGGTCGGCCAGGGCAGTACGTTCTGGTTCGAGATCGAGCTG
GCGCTGGCGAGCTTGTCCGGCGCGACGCCGCCGGCGGCATCGGTGTCTGCGCTGGAGGTGCTGCTGGTGGAG
GACGTGGCGCTCAACCGCGAGGTAGCCCAGGGCCTGCTCGAGCGGGACGGCCACCGGGTGATGCTGGCCGAG
GACGCGGGGCCGGCCCTGGCGCTGTGCCGGCAGCGGCGCTTCGACCTGATCCTGCTGGACATGCACCTGCCG
GGGATGGCTGGCCTCGAGCTTTGCGCCGGGATTCGCCGGCAGCTCGACGGCCTGAACCGCGCCACGCCGGTC
TTCGCCTTCACCGCCAGCATCCAGCCGGACATGGTGCGTCGGTACTTCGCCGCGGGCATGCAGGGCGTGCTC
GGCAAGCCCCTGCGGATGGACGAGCTGCGCCGCGCGCTGGGCGAGGTCGGAACCGGCGTGCCTGCGCTTGCG
GCGGACGCCGCGCTGGACCGGCAAATGCTCGAGACCCACCGCCGCCTGCTGGGGCGGCACAAGCTCGCCGGA
CTGCTGGGCAACCTGCTGGGAAGCCTgGACGAGCAGTTGCCGCTGCTGGCCGAAGCCCTGGACCAGGTGGAC
CTGGCCGAGGCGGCGAACATCGCCCATCGCCTGTCCGGAAGCTGCCACTCCATGGGCCTGGTGGCGCTCGGC
GCCGGCCTGGGCGAGCTGGAGCGCGAGGCCCTGGGCGCGGCCGGGGTCGACCCGCGAGCCTGGGGCGCACGC
CTGGGTAGCCTGCGCCGCGACGGCGCAGAAGCCCTGCGCCGCGCCGGCTTCCTCGGCGAAGCCGACTCAGCG
GCCGGTTGA