ViewGene
Locus Name:
GeneID:
Location:

GeneID:682
TrivialName: PA14_29800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29800
PAO1 Ortholog Locus:PA2652
Sequence Length:1686
Protein Length:561
Start: 2580146
Stop: 2581831
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06040.1|AE004694_3 (AE004694) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 554/561 (98%), Positives = 558/561 (99%)
Sequence:
ATGATGCGTCTGACCCTGAAATCCAAAGTCCTCCTGCTGGCCATGGTGCCGGTGCTGCTCTTCGCCCTGGTG
CTCAGCGGCGGAGCGGTGCTGATCCTGAAAAAACAGGCTGATACCGAAGTCAAGGATACCCGCGAGCGCCTG
CTCGGCGACCGTCGTGCCGAACTCGAGCACTATGTGCAGATCGCCATGGGCAGTATCCAGGCCGAGTACGAC
CGCTCGGCCAACGGCGACCTGAACGCCCGCGCCGAGGCCATTGCGCGCCTGTCGAAGGTCAAGTACGGCAAG
GACGGCTATATCTTCGGCTACGACTCCCAGGTGGTGCGCCTGTTCCGTGGCGACAGCCCGGTGGACGTCGGC
AAGAGCTTCCGCGACCGCCGCGATCCCAGCGGCGTCTACCTCAACCGCGAACTGGTGGAGGCAGGCAAGAAC
GGCAGCCACTACGTGACCTATACCTCGCCGCTGCCAGGTAACGAAAGCGTCATGGTGCCGAAGCTGTCGTAC
ACCCTGTACCTGCCGAAGTGGGACATGGTGATCGGCTCGGCGATCAACCTCGACGGCGTCGAGGCCCAACTG
GTGGAGATCAAGCAAGCCATCGACGAGCGTATCGGCACCCTGATCGCCAGCATCGTGGCGATCGCCGGGGTC
CTCCTGGTGGTCCTGCTGGTGATCGGCCTGGCGGTGGCCAACGCGATGCTGCGTCCGCTGCACCAGATCCGC
CAGAACCTCGACGACATCGCCGCCGGCGAGGGCGACCTGACCCGCCGCCTGCCGGTGACCAGCCACGACGAG
CTGGGCGAGCTGGCCGGTTCCTTCAACCGCTTCGTCGAGAAGATCCACGGTCTGGTGCGGCAGATCGCCGGG
ATGACCGGCGACCTCAAGCAACTGGTGGAGCAGATGTCGGCCCAGGCCGAGCGTTCCGAGCAGGCCATGGAG
CGCCAGCGCCACGAGACCGATCAGGTCGCCACCGCGATCAACGAGATGTCCGCCGCCGCCCATGAAGTGGCG
CAGAGCGCCCAGCGCGCCGCCGAGGCCGCGCAGCAGACCGACCACGAAGGCCAGGCGGCCAAGCGCGTGGTG
GACGGCAGCATCGAGCGCATCCACGCGCTGGTGGACGAGATCCGCGACAGCGGTTCCTCGCTGGACAGCCTG
CAACAGGACGTGCAGTCGATCGTCAGCGTGCTCGGGGTGATCCGCTCCATTGCCGAACAGACTAACCTGCTG
GCGCTCAACGCGGCCATCGAGGCGGCCCGTGCCGGCGAGGCCGGACGTGGCTTCGCGGTGGTCGCCGACGAA
GTGCGGGCGCTGGCCAGCCGCACCCAGCAGAGCACCCAGGAAATCCAGGGCATGATCGATCGCCTGCAGCAG
GGCACCAACGCCGCGGTCGACGCCATGCGCCGTTCCGGCGAGGCCGGCGAGGGCACCAGCAACCAGGCCAAC
CAGGCCGGCGATTCGCTGGACGCCATCGCCCAGTTGATTGCCACCATCAACGCGATGAACGCGCAGATCGCC
AGCGCCGCCGAGGAACAGACCGCGGTGGCCGAGGAGATCAACCGCAGCGTGCACCAGATCGCCGGCGCGGTG
GACAGCGTCGCCGACGAGGCCCAGCAGGGCGCGCAGACCGCCCGCAGCCTGGCGCAACTGGGCCAGGGCCTG
GGCCGGCTGGTCGGTCAGTTCCGCATCTGA
Translation:
MMRLTLKSKVLLLAMVPVLLFALVLSGGAVLILKKQADTEVKDTRERLLGDRRAELEHYVQIAMGSIQAEYD
RSANGDLNARAEAIARLSKVKYGKDGYIFGYDSQVVRLFRGDSPVDVGKSFRDRRDPSGVYLNRELVEAGKN
GSHYVTYTSPLPGNESVMVPKLSYTLYLPKWDMVIGSAINLDGVEAQLVEIKQAIDERIGTLIASIVAIAGV
LLVVLLVIGLAVANAMLRPLHQIRQNLDDIAAGEGDLTRRLPVTSHDELGELAGSFNRFVEKIHGLVRQIAG
MTGDLKQLVEQMSAQAERSEQAMERQRHETDQVATAINEMSAAAHEVAQSAQRAAEAAQQTDHEGQAAKRVV
DGSIERIHALVDEIRDSGSSLDSLQQDVQSIVSVLGVIRSIAEQTNLLALNAAIEAARAGEAGRGFAVVADE
VRALASRTQQSTQEIQGMIDRLQQGTNAAVDAMRRSGEAGEGTSNQANQAGDSLDAIAQLIATINAMNAQIA
SAAEEQTAVAEEINRSVHQIAGAVDSVADEAQQGAQTARSLAQLGQGLGRLVGQFRI*
AnnotationID:691GeneID:682
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 14:02:26
Gene Name:
Confidence Code:3
GeneProduct:putative chemotaxis transducer
Cell Localization:()
Synonyms:PA2652
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:putative methyl-accepting chemotaxis protein
Functional Category Confidence Code:5
COGs:COG0840,smart00283,pfam00015
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56857.1| (AE016868) methyl-accepting chemotaxis protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 559

 Score =  754 bits (1946), Expect = 0.0
 Identities = 399/560 (71%), Positives = 472/560 (84%), Gaps = 1/560 (0%)

>gb|AAF95922.1| (AE004344) methyl-accepting chemotaxis protein [Vibrio cholerae]
          Length = 553

 Score =  367 bits (943), Expect = e-101
 Identities = 208/560 (37%), Positives = 342/560 (61%), Gaps = 7/560 (1%)








 
Structural Features:
COG0840, Tar, Methyl-accepting chemotaxis protein 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 408 residues,  90.4% aligned
Score =  208 bits (529), Expect = 2e-54
Identities = 127/374 (33%), Positives = 203/374 (54%), Gaps = 5/374 (1%)

smart00283, MA, Methyl-accepting chemotaxis-like domains (
(chemotaxis sensory transducer).
CD-Length = 262 residues, 100.0% aligned
Score =  191 bits (487), Expect = 2e-49
Identities = 97/262 (37%), Positives = 152/262 (58%)

pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP) signaling domain.
CD-Length = 251 residues,  99.6% aligned
Score =  169 bits (428), Expect = 1e-42
Identities = 92/250 (36%), Positives = 153/250 (61%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1367




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18509




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33189




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:682_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:682
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1147
                           PA2652_tr
                           translation of PA2652
                           561
                           98.75
                           99.46
                           0
                           2700.0
     

     
     
42516
                           gb|AAG06040.1|AE004694_3
                           (AE004694) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           561
                           98.75
                           99.46
                           0
                           2700.0
     

     
     
42517
                           gb|AAO56857.1|
                           (AE016868) methyl-accepting chemotaxis protein [Pseudomonas syringae pv. tomato str. DC3000]
                           561
                           71.12
                           84.13
                           2
                           1948.0
     

     
     
42525
                           dbj|BAC94302.1|
                           (AP005336) methyl-accepting chemotaxis protein [Vibrio vulnificus YJ016]
                           591
                           35.02
                           50.93
                           76
                           732.0
     

     
     
42524
                           dbj|BAC96117.1|
                           (AP005344) methyl-accepting chemotaxis protein [Vibrio vulnificus YJ016]
                           588
                           34.01
                           50.34
                           75
                           726.0
     

     






      

          
GC ORFID: 43684How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2652Glimmer Score: 

          
Start: 2373780Stop: 2372095

          
Length: 1686


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2652 translation of PA2652Homolog Bit Score 1044.0

          
Other Homologs:  t_PA2920 (ORF: BLASTX 271.0), psyr_15may02_Scaffold4_revised_gene5598 (ORF: BLASTX 238.0), psyr_15may02_Scaffold1_revised_gene392 (ORF: BLASTX 234.0), psyr_15may02_Scaffold3_revised_gene4244 (ORF: BLASTX 228.0), psyr_15may02_Scaffold9_revised_gene8178 (ORF: BLASTX 221.0), psyr_15may02_Scaffold5_revised_gene6405 (ORF: BLASTX 202.0), t_PA1561 (ORF: BLASTX 198.0), psyr_15may02_Scaffold8_revised_gene7520 (ORF: BLASTX 198.0), t_PA2652 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATGCGTCTGACCCTGAAATCCAAAGTCCTCCTGCTGGCCATGGTGCCGGTGCTGCTCTTCGCCCTGGTG 
CTCAGCGGCGGAGCGGTGCTGATCCTGAAAAAACAGGCTGATACCGAAGTCAAGGATACCCGCGAGCGCCTG 
CTCGGCGACCGTCGTGCCGAACTCGAGCACTATGTGCAGATCGCCATGGGCAGTATCCAGGCCGAGTACGAC 
CGCTCGGCCAACGGCGACCTGAACGCCCGCGCCGAGGCCATTGCGCGCCTGTCGAAGGTCAAGTACGGCAAG 
GACGGCTATATCTTCGGCTACGACTCCCAGGTGGTGCGCCTGTTCCGTGGCGACAGCCCGGTGGACGTCGGC 
AAGAGCTTCCGCGACCGCCGCGATCCCAGCGGCGTCTACCTCAACCGCGAACTGGTGGAGGCAGGCAAGAAC 
GGCAGCCACTACGTGACCTATACCTCGCCGCTGCCAGGTAACGAAAGCGTCATGGTGCCGAAGCTGTCGTAC 
ACCCTGTACCTGCCGAAGTGGGACATGGTGATCGGCTCGGCGATCAACCTCGACGGCGTCGAGGCCCAACTG 
GTGGAGATCAAGCAAGCCATCGACGAGCGTATCGGCACCCTGATCGCCAGCATCGTGGCGATCGCCGGGGTC 
CTCCTGGTGGTCCTGCTGGTGATCGGCCTGGCGGTGGCCAACGCGATGCTGCGTCCGCTGCACCAGATCCGC 
CAGAACCTCGACGACATCGCCGCCGGCGAGGGCGACCTGACCCGCCGCCTGCCGGTGACCAGCCACGACGAG 
CTGGGCGAGCTGGCCGGTTCCTTCAACCGCTTCGTCGAGAAGATCCACGGTCTGGTGCGGCAGATCGCCGGG 
ATGACCGGCGACCTCAAGCAACTGGTGGAGCAGATGTCGGCCCAGGCCGAGCGTTCCGAGCAGGCCATGGAG 
CGCCAGCGCCACGAGACCGATCAGGTCGCCACCGCGATCAACGAGATGTCCGCCGCCGCCCATGAAGTGGCG 
CAGAGCGCCCAGCGCGCCGCCGAGGCCGCGCAGCAGACCGACCACGAAGGCCAGGCGGCCAAGCGCGTGGTG 
GACGGCAGCATCGAGCGCATCCACGCGCTGGTGGACGAGATCCGCGACAGCGGTTCCTCGCTGGACAGCCTG 
CAACAGGACGTGCAGTCGATCGTCAGCGTGCTCGGGGTGATCCGCTCCATTGCCGAACAGACTAACCTGCTG 
GCGCTCAACGCGGCCATCGAGGCGGCCCGTGCCGGCGAGGCCGGACGTGGCTTCGCGGTGGTCGCCGACGAA 
GTGCGGGCGCTGGCCAGCCGCACCCAGCAGAGCACCCAGGAAATCCAGGGCATGATCGATCGCCTGCAGCAG 
GGCACCAACGCCGCGGTCGACGCCATGCGCCGTTCCGGCGAGGCCGGCGAGGGCACCAGCAACCAGGCCAAC 
CAGGCCGGCGATTCGCTGGACGCCATCGCCCAGTTGATTGCCACCATCAACGCGATGAACGCGCAGATCGCC 
AGCGCCGCCGAGGAACAGACCGCGGTGGCCGAGGAGATCAACCGCAGCGTGCACCAGATCGCCGGCGCGGTG 
GACAGCGTCGCCGACGAGGCCCAGCAGGGCGCGCAGACCGCCCGCAGCCTGGCGCAACTGGGCCAGGGCCTG 
GGCCGGCTGGTCGGTCAGTTCCGCATCTGA