ViewGene

Locus Name:
GeneID:
Location:

GeneID:681
TrivialName: PA14_00380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00380
PAO1 Ortholog Locus:PA0031
Sequence Length:1512
Protein Length:503
Start: 34532
Stop: 33021
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03421.1|AE004442_8 (AE004442) choline sulfatase [Pseudomonas aeruginosa PAO1]
Identities = 501/503 (99%), Positives = 503/503 (100%)
Sequence:
ATGAAGACCTCGCCGAACATCCTGTTCATCATGGCCGACCAGATGGCCGCGCCGCTGCTGCCGCTTCACGAT
CCGCGCTCGGTGCTGCGCATGCCTCACCTCTCGCGCCTCGCCGAACGGGCCGTGGTGTTCGACTCGGCGTAC
TGCAACAGCCCGCTCTGCGCGCCGTCGCGCTTCACCCTGGTCAGCGGTCGCTTGCCTACTCGCATCGGCGCC
TGGGACAACGCCGCCGACTTCGCCGCCGATACCCCCACCTACGCCCACTACCTGCGCAACCTCGGCTATCGC
ACGGCGCTGTCGGGCAAGATGCACTTCTGCGGTCCCGACCAGTTGCACGGCTACGAGGAACGCCTGACCAGC
GACATCTATCCGGCGGACTATGGCTGGGCGGTGAACTGGGACGAGCCGGAGGTGCGCCCGAGCTGGTACCAC
AACATGTCCTCGGTTTTGCAGGCCGGTCCCTGCGTGCGCACCAACCAGCTGGACTTCGACGAGGAGGTGGTG
TTCAAGGCCCGCCAGTACCTCTACGACCATGTTCGCCAGCACGCCGGCCAGCCATTCTGCCTGACCGTGTCG
ATGACCCATCCGCACGACCCCTACAGCATCCCGGCGAGCTACTGGAATCTCTACCGCGACGAGGACATCCCG
CTGCCGCGCCAGCGCTTCGCCCAGGAGGAGCAGGACCCTCATTCGCAACGCCTGCTGAAGGTCATCGACCTG
TGGGACAAGCCGTTGCCCGAGGAGCGCATCCGCGCCGCCCGGCGTGCCTACTTCGGCGCCTGCAGCTACGTC
GACGCGCAGATCGGTGCGCTGCTGGCGACCCTGGAGGAATGCGGGCTGGCCGACGACACCATCGTGGTGTTC
TCCGGCGACCATGGCGACATGCTCGGCGAGCGCGGCCTCTGGTACAAGATGCACTGGTTCGAGATGGCCGCG
CGCGTGCCGCTGCTGGTCCATGCGCCGGCGCGCTTCGCGCCGCGCCGCATCGGCGCTTCGGTATCCACCGTG
GACCTGCTGCCGACCCTGGTGGAGCTGGCCGGCGGCCAGGTCGATCCACGCCTGCCGCTGGAAGGCCGCTCG
CTGCTGCCGCACCTGCGCGACGGCAGCGGGCATGACGAGGTGATCGGCGAATACACCGCCGAGGGCACCCTC
AGCCCGCTGATGATGATCCGCCGCGGCGACTACAAGTTCATCTACTCCGAGCAGGACCCCTGCCTGCTCTAC
GACCTGCGCAACGACCCGCAGGAGCGCGAGAACCTCGCCGCCAGTCCGGCCCATCGCGGAACGTTCGAGGCG
TTCCTCGACGAGGCCCGGCGACGCTGGGACATCCCCGCGATCACCCGCGCCGTACTCGACAGCCAGCGCCGC
CGACGCCTGGTGGCCGCCGCGCTGGCGCGAGGGCGGCTGGCCAGTTGGGACCACCAGCCGTGGATCGACGCC
AGCCAGCAGTACATGCGCAACCATATCGACCTGGACGATCTCGAGCGCCGCGCGCGCTTCCCGCAACCCTGA
Translation:
MKTSPNILFIMADQMAAPLLPLHDPRSVLRMPHLSRLAERAVVFDSAYCNSPLCAPSRFTLVSGRLPTRIGA
WDNAADFAADTPTYAHYLRNLGYRTALSGKMHFCGPDQLHGYEERLTSDIYPADYGWAVNWDEPEVRPSWYH
NMSSVLQAGPCVRTNQLDFDEEVVFKARQYLYDHVRQHAGQPFCLTVSMTHPHDPYSIPASYWNLYRDEDIP
LPRQRFAQEEQDPHSQRLLKVIDLWDKPLPEERIRAARRAYFGACSYVDAQIGALLATLEECGLADDTIVVF
SGDHGDMLGERGLWYKMHWFEMAARVPLLVHAPARFAPRRIGASVSTVDLLPTLVELAGGQVDPRLPLEGRS
LLPHLRDGSGHDEVIGEYTAEGTLSPLMMIRRGDYKFIYSEQDPCLLYDLRNDPQERENLAASPAHRGTFEA
FLDEARRRWDIPAITRAVLDSQRRRRLVAAALARGRLASWDHQPWIDASQQYMRNHIDLDDLERRARFPQP*
AnnotationID:690GeneID:681
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 13:01:41
Gene Name:betC
Confidence Code:2
GeneProduct:choline sulfatase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3119
Secondary Functional Category(ies):transport of small molecules
EC Number:3.1.6.6
Status:ACTIVE
Pathway:
Homology:
>gb|AAN65711.1|AE016197_9 (AE016774) choline sulfatase [Pseudomonas putida KT2440]
          Length = 505

 Score =  839 bits (2168), Expect = 0.0
 Identities = 397/501 (79%), Positives = 439/501 (87%), Gaps = 1/501 (0%)

>gb|AAO53719.1| (AE016856) sulfatase family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 501

 Score =  808 bits (2088), Expect = 0.0
 Identities = 380/498 (76%), Positives = 428/498 (85%), Gaps = 1/498 (0%)

>gb|AAL45442.1| (AE009393) choline sulfatase [Agrobacterium tumefaciens str. C58
           (U. Washington)]
          Length = 503

 Score =  463 bits (1191), Expect = e-129
 Identities = 249/501 (49%), Positives = 317/501 (63%), Gaps = 6/501 (1%)
Structural Features:
COG3119, AslA, Arylsulfatase A and related enzymes 
[Inorganic ion transport and metabolism]
CD-Length = 475 residues,  99.6% aligned
Score =  276 bits (708), Expect = 3e-75
Identities = 153/487 (31%), Positives = 192/487 (39%), Gaps = 50/487 (10%)
Genomic Context:
Comment:
ReferenceID:1365
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18507
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33396
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:681_cdd.html
URL:
ReferenceID:35517
Author/Investigator(s): Osteras M, Boncompagni E, Vincent N, Poggi MC, Le Rudulier D.
Title: Presence of a gene encoding choline sulfatase in Sinorhizobium meliloti bet operon: choline-O-sulfate is metabolized into glycine betaine.
PubMed: 9736747
MedLine:
Source:
Proc Natl Acad Sci U S A. 1998 Sep 15;95(19):11394-9.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=9736747
Homologs By Global Alignment
Gene ID:681

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1146 PA0031_tr translation of PA0031 503 99.60 99.99 0 2701.0
42506 gb|AAG03421.1|AE004442_8 (AE004442) choline sulfatase [Pseudomonas aeruginosa PAO1] 503 99.60 99.99 0 2701.0
42507 gb|AAN65711.1|AE016197_9 (AE016774) choline sulfatase [Pseudomonas putida KT2440] 507 78.30 86.58 6 2169.0
42508 gb|AAO53719.1| (AE016856) sulfatase family protein [Pseudomonas syringae pv. tomato str. DC3000] 503 75.94 85.48 2 2089.0
42510 gb|AAK88799.1| (AE008222) AGR_L_469p [Agrobacterium tumefaciens str. C58 (Cereon)] 507 49.11 62.52 8 1198.0
GC ORFID: 43683How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0031Glimmer Score:
Start: 5835869Stop: 5834358
Length: 1512
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0031 translation of PA0031Homolog Bit Score 1045.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene4091 (ORF: BLASTX 803.0), t_PA0031 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGACCTCGCCGAACATCCTGTTCATCATGGCCGACCAGATGGCCGCGCCGCTGCTGCCGCTTCACGAT
CCGCGCTCGGTGCTGCGCATGCCTCACCTCTCGCGCCTCGCCGAACGGGCCGTGGTGTTCGACTCGGCGTAC
TGCAACAGCCCGCTCTGCGCGCCGTCGCGCTTCACCCTGGTCAGCGGTCGCTTGCCTACTCGCATCGGCGCC
TGGGACAACGCCGCCGACTTCGCCGCCGATACCCCCACCTACGCCCACTACCTGCGCAACCTCGGCTATCGC
ACGGCGCTGTCGGGCAAGATGCACTTCTGCGGTCCCGACCAGTTGCACGGCTACGAGGAACGCCTGACCAGC
GACATCTATCCGGCGGACTATGGCTGGGCGGTGAACTGGGACGAGCCGGAGGTGCGCCCGAGCTGGTACCAC
AACATGTCCTCGGTTTTGCAGGCCGGTCCCTGCGTGCGCACCAACCAGCTGGACTTCGACGAGGAGGTGGTG
TTCAAGGCCCGCCAGTACCTCTACGACCATGTTCGCCAGCACGCCGGCCAGCCATTCTGCCTGACCGTGTCG
ATGACCCATCCGCACGACCCCTACAGCATCCCGGCGAGCTACTGGAATCTCTACCGCGACGAGGACATCCCG
CTGCCGCGCCAGCGCTTCGCCCAGGAGGAGCAGGACCCTCATTCGCAACGCCTGCTGAAGGTCATCGACCTG
TGGGACAAGCCGTTGCCCGAGGAGCGCATCCGCGCCGCCCGGCGTGCCTACTTCGGCGCCTGCAGCTACGTC
GACGCGCAGATCGGTGCGCTGCTGGCGACCCTGGAGGAATGCGGGCTGGCCGACGACACCATCGTGGTGTTC
TCCGGCGACCATGGCGACATGCTCGGCGAGCGCGGCCTCTGGTACAAGATGCACTGGTTCGAGATGGCCGCG
CGCGTGCCGCTGCTGGTCCATGCGCCGGCGCGCTTCGCGCCGCGCCGCATCGGCGCTTCGGTATCCACCGTG
GACCTGCTGCCGACCCTGGTGGAGCTGGCCGGCGGCCAGGTCGATCCACGCCTGCCGCTGGAAGGCCGCTCG
CTGCTGCCGCACCTGCGCGACGGCAGCGGGCATGACGAGGTGATCGGCGAATACACCGCCGAGGGCACCCTC
AGCCCGCTGATGATGATCCGCCGCGGCGACTACAAGTTCATCTACTCCGAGCAGGACCCCTGCCTGCTCTAC
GACCTGCGCAACGACCCGCAGGAGCGCGAGAACCTCGCCGCCAGTCCGGCCCATCGCGGAACGTTCGAGGCG
TTCCTCGACGAGGCCCGGCGACGCTGGGACATCCCCGCGATCACCCGCGCCGTACTCGACAGCCAGCGCCGC
CGACGCCTGGTGGCCGCCGCGCTGGCGCGAGGGCGGCTGGCCAGTTGGGACCACCAGCCGTGGATCGACGCC
AGCCAGCAGTACATGCGCAACCATATCGACCTGGACGATCTCGAGCGCCGCGCGCGCTTCCCGCAACCCTGA