|
|
|
Modification Date/Time: | 2006-04-06 13:01:23 |
|
|
|
|
|
|
|
|
|
|
|
|
Missense Discrepancy: | FALSE |
|
Comments: Homology: gb|AAG08321.1|AE004906_9 (AE004906) probable rRNA methylase [Pseudomonas aeruginosa PAO1]
Identities = 246/248 (99%), Positives = 247/248 (99%)
|
Sequence:
ATGAGTCAGTGGGAAAAGGTCTACGGCGTGCATGCCGTGGAAGCGTTGTTGCGTCATCACCCGAAGCGGGTC
AAGCAGTTGTGGCTGGCCGAGGGGCGGCATGATCCGCGGGTCCAGGTGCTCACCGAGCTGGCCGCCGGGTTC
CGTATTCCGGTAGGGCAGCGCGACCGGCGCGAACTCGACGAGTGGGCGGAAGGCGTCCACCAGGGCGTGGTC
GCGGAAGTCAGCCCCAGCCAGGTCTGGGGCGAAAACATGCTCGAGGAACTGCTCGAGCGGAGCGAGGGCGTG
CCGCTGCTGCTGGCCCTGGATGGCGTCACCGATCCGCACAACCTCGGCGCCTGCCTGCGTACCGCCGATGCG
GCGGGGGTGCAGGCGGTGATCGTGCCCAAGGACAAGTCCGCGACCCTCAACGCCACCGTGCGCAAGGTCGCT
TGCGGCGCCGCCGAGGTGATCCCGCTGGTGGCGGTGACCAACCTCGCGCGCACCCTGGAAAAGCTCCAGCAG
CGCGGCCTGTGGGTGGTCGGCACCGCTGGCGAGGCGGACAAGACCCTCTACCAGCTCGACCTCACGGGGCCG
ACCGTGCTGGTGATGGGcgcggaAGGCAAGGGCATGCGCCGGCTGAcccgCGAGCACtGCGACTTCCtcgcc
agGTTGCCGATGGCCGGCAGCGTCAGCAgCCTGAACGTCtcggtCGCCACCGGCGTCTGCCTGTtcaagAtc
ctccgccaGCGcaccccgCtggagtgA |
Translation:
MSQWEKVYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWAEGVHQGVV
AEVSPSQVWGENMLEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVA
CGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTLYQLDLTGPTVLVMGAEGKGMRRLTREHCDFLA
RLPMAGSVSSLNVSVATGVCLFKILRQRTPLE* |
AnnotationID:6801 | GeneID:6800 |
|
Modification Date/Time: |
2005-03-13 13:01:07 |
|
|
|
GeneProduct: | putative RNA methyltransferase, TrmH family, group 3 |
|
|
|
Cell Localization Confidence Code: | 5 |
|
|
Functional Category: | (24) Transcription, RNA processing and degradation |
|
Alternate Gene Product Name: | |
|
Functional Category Confidence Code: | 5 |
|
|
Secondary Functional Category(ies): | |
|
|
|
|
Homology: | >gb|AAO58362.1| (AE016873) RNA methyltransferase, TrmH family, group 3 [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 250
Score = 412 bits (1058), Expect = e-114
Identities = 203/245 (82%), Positives = 221/245 (90%)
>gb|AAN56909.1|AE015825_8 (AE015825) RNA methyltransferase, TrmH family, group 3 [Shewanella
oneidensis MR-1]
Length = 246
Score = 289 bits (740), Expect = 9e-78
Identities = 145/245 (59%), Positives = 183/245 (74%), Gaps = 2/245 (0%) |
|
Structural Features: | COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]
CD-Length = 260 residues, 92.3% aligned
Score = 246 bits (630), Expect = 2e-66
Identities = 112/246 (45%), Positives = 148/246 (60%), Gaps = 8/246 (3%)
pfam00588, SpoU_methylase, SpoU rRNA Methylase family.
CD-Length = 143 residues, 100.0% aligned
Score = 151 bits (383), Expect = 7e-38
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 1/143 (0%) |
|
|
|
|
|