ViewGene

Locus Name:
GeneID:
Location:

GeneID:6800
TrivialName: PA14_65190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65190
PAO1 Ortholog Locus:PA4936
Sequence Length:747
Protein Length:248
Start: 5810079
Stop: 5809333
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08321.1|AE004906_9 (AE004906) probable rRNA methylase [Pseudomonas aeruginosa PAO1]
Identities = 246/248 (99%), Positives = 247/248 (99%)
Sequence:
ATGAGTCAGTGGGAAAAGGTCTACGGCGTGCATGCCGTGGAAGCGTTGTTGCGTCATCACCCGAAGCGGGTC
AAGCAGTTGTGGCTGGCCGAGGGGCGGCATGATCCGCGGGTCCAGGTGCTCACCGAGCTGGCCGCCGGGTTC
CGTATTCCGGTAGGGCAGCGCGACCGGCGCGAACTCGACGAGTGGGCGGAAGGCGTCCACCAGGGCGTGGTC
GCGGAAGTCAGCCCCAGCCAGGTCTGGGGCGAAAACATGCTCGAGGAACTGCTCGAGCGGAGCGAGGGCGTG
CCGCTGCTGCTGGCCCTGGATGGCGTCACCGATCCGCACAACCTCGGCGCCTGCCTGCGTACCGCCGATGCG
GCGGGGGTGCAGGCGGTGATCGTGCCCAAGGACAAGTCCGCGACCCTCAACGCCACCGTGCGCAAGGTCGCT
TGCGGCGCCGCCGAGGTGATCCCGCTGGTGGCGGTGACCAACCTCGCGCGCACCCTGGAAAAGCTCCAGCAG
CGCGGCCTGTGGGTGGTCGGCACCGCTGGCGAGGCGGACAAGACCCTCTACCAGCTCGACCTCACGGGGCCG
ACCGTGCTGGTGATGGGcgcggaAGGCAAGGGCATGCGCCGGCTGAcccgCGAGCACtGCGACTTCCtcgcc
agGTTGCCGATGGCCGGCAGCGTCAGCAgCCTGAACGTCtcggtCGCCACCGGCGTCTGCCTGTtcaagAtc
ctccgccaGCGcaccccgCtggagtgA
Translation:
MSQWEKVYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWAEGVHQGVV
AEVSPSQVWGENMLEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQAVIVPKDKSATLNATVRKVA
CGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTLYQLDLTGPTVLVMGAEGKGMRRLTREHCDFLA
RLPMAGSVSSLNVSVATGVCLFKILRQRTPLE*
AnnotationID:6801GeneID:6800
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 13:01:07
Gene Name:
Confidence Code:3
GeneProduct:putative RNA methyltransferase, TrmH family, group 3
Cell Localization:()
Synonyms:yjfH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0566,pfam00588
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58362.1| (AE016873) RNA methyltransferase, TrmH family, group 3 [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 250

 Score =  412 bits (1058), Expect = e-114
 Identities = 203/245 (82%), Positives = 221/245 (90%)

>gb|AAN56909.1|AE015825_8 (AE015825) RNA methyltransferase, TrmH family, group 3 [Shewanella
           oneidensis MR-1]
          Length = 246

 Score =  289 bits (740), Expect = 9e-78
 Identities = 145/245 (59%), Positives = 183/245 (74%), Gaps = 2/245 (0%)
Structural Features:
COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]
CD-Length = 260 residues,  92.3% aligned
Score =  246 bits (630), Expect = 2e-66
Identities = 112/246 (45%), Positives = 148/246 (60%), Gaps = 8/246 (3%)

pfam00588, SpoU_methylase, SpoU rRNA Methylase family. 
CD-Length = 143 residues, 100.0% aligned
Score =  151 bits (383), Expect = 7e-38
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 1/143 (0%)
Genomic Context:
Comment:
ReferenceID:13324
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30683
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35131
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:6800_cdd.html
URL:
Homologs By Global Alignment
Gene ID:6800

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
8030 PA4936_tr translation of PA4936 248 99.19 99.59 0 1260.0
201714 gb|AAG08321.1|AE004906_9 (AE004906) probable rRNA methylase [Pseudomonas aeruginosa PAO1] 248 99.19 99.59 0 1260.0
201715 gb|AAO58362.1| (AE016873) RNA methyltransferase, TrmH family, group 3 [Pseudomonas syringae pv. tomato str. DC3000] 250 81.20 88.40 2 1055.0
201716 gb|AAN70447.1|AE016686_1 (AE016792) RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida KT2440] 248 80.24 88.70 0 1035.0
201720 gb|AAK04037.1| (AE006232) unknown [Pasteurella multocida] 250 62.40 74.80 7 733.0
GC ORFID: 49802How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 5073760Stop: 5073014
Length: 747
Start Codon: ATGTruncated Start:
Stop Codon: tgATruncated Stop:
Homolog: t_PA4936 translation of PA4936Homolog Bit Score 489.0
Other Homologs: t_PA4936 translation of PA4936 (BLASTP 489), psyr_15may02_Scaffold2_revised_gene3438 related to: gi|15600129|ref|NP_253623.1| (NC_002516) probable rRNA methylase [Pseudomonas aeruginosa] pir||B83030 probable rRNA methylase PA4936 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG08321.1|AE004906_9 (AE004906) probable rRNA methylase [Ps-TRUNCATED- (BLASTP 413)
GC ORF Sequence
ATGAGTCAGTGGGAAAAGGTCTACGGCGTGCATGCCGTGGAAGCGTTGTTGCGTCATCACCCGAAGCGGGTC
AAGCAGTTGTGGCTGGCCGAGGGGCGGCATGATCCGCGGGTCCAGGTGCTCACCGAGCTGGCCGCCGGGTTC
CGTATTCCGGTAGGGCAGCGCGACCGGCGCGAACTCGACGAGTGGGCGGAAGGCGTCCACCAGGGCGTGGTC
GCGGAAGTCAGCCCCAGCCAGGTCTGGGGCGAAAACATGCTCGAGGAACTGCTCGAGCGGAGCGAGGGCGTG
CCGCTGCTGCTGGCCCTGGATGGCGTCACCGATCCGCACAACCTCGGCGCCTGCCTGCGTACCGCCGATGCG
GCGGGGGTGCAGGCGGTGATCGTGCCCAAGGACAAGTCCGCGACCCTCAACGCCACCGTGCGCAAGGTCGCT
TGCGGCGCCGCCGAGGTGATCCCGCTGGTGGCGGTGACCAACCTCGCGCGCACCCTGGAAAAGCTCCAGCAG
CGCGGCCTGTGGGTGGTCGGCACCGCTGGCGAGGCGGACAAGACCCTCTACCAGCTCGACCTCACGGGGCCG
ACCGTGCTGGTGATGGGcgcggaAGGCAAGGGCATGCGCCGGCTGAcccgCGAGCACtGCGACTTCCtcgcc
agGTTGCCGATGGCCGGCAGCGTCAGCAgCCTGAACGTCtcggtCGCCACCGGCGTCTGCCTGTtcaagAtc
ctccgccaGCGcaccccgCtggagtgA