ViewGene
Locus Name:
GeneID:
Location:

GeneID:680
TrivialName: PA14_63750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63750
PAO1 Ortholog Locus:PA4822
Sequence Length:1668
Protein Length:555
Start: 5684876
Stop: 5683209
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08207.1|AE004895_7 (AE004895) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 549/555 (98%), Positives = 550/555 (99%)
Sequence:
ATGCTGGGAACCATCCTCCTGATCAACCTGGCCGGTGCCGTGGCCCTTCTGTTGTGGGGCACGCACATGGTC
TCCAGCGGCGTGCTGCGCGGTTTCGGCACTGCGCTGCGCAACTGGCTCGGCCGCCACCTGGGCAACCGCTGG
CTGGCCCTGCTCGCCGGGCTCGGCATCACCGGCCTGCTGCAGAGCAGCACCGCCACCAGTCTGATGGCAGCG
TCCTTCACCGCCAGTGGCACCCTGGGCCTGGCGCCGGCGCTGGCAGTGATGCTCGGCGCCAACGTCGGCACC
ACTCTGGTGGTGCAACTGCTCAGCTTCGACACCTCGTTGCTGGCGCCGCTGGCCCTGCTGTCCGGCCTGCTG
CTGTTCCGCCTGGGCGACGGTCCGCGCCTGGAGAGCCTTGGCCAGTGCCTGATCGGACTCGGCCTGATGCTT
CTGGCGCTGGCGTTGCTCGGCCATTCCCTGCAGCAGATCGAGGCCTCGCCAGCCTTTGTCGCGGTGATCCAC
GGCCTCGAAGGCGATCCGCTGATCGCCCTGCTGCTCGCCGCGCTGCTGACCTGGGCCTGCCATTCCAGTGTC
GCGGTGGTACTGCTGGTGGCGTCCCTGGCCCAGGCCGGACTGGTCTCGCTGCCCATCGCCCTGGCCCTGGTG
CTCGGTGCCAACCTCGGCGGCGCCTTGCCGGCGCTGGGGGTGGCCGGTAGCCGGGTGGCGCGGCGCCTGCCG
TTGGGCAACCTGCTGGTGCGCCTGCTCGGTTGCCTGCTGGTGCTGCCCTGGCTGACGGCGCTGGCGCAACCG
GCCAACGCACTCGGCGGTGCGGCGGCGGTCTGGTTCCACAGTGCTTTCAACCTGGCCCTGGCACTGCTGGCG
ATCGGCTTCACCGGACCGCTTGCGGCGCTGCTCGCGCGCCTGTTGCCGGAAGAGGCGCAGTCCGACGACCCG
GGCATGCCGCGCTACCTCGACGAAGCCGGGCTGGAGGTGGCCAACATCGGCCTGGCCAACGCTACTCGCGAA
GTCCTGCGGCTGGCCGACATGGCCAGTCTGATGCTGCGCGCCACCAGCGGCCTGTTGCAGCGACCGGAGGCG
AAGGTGGTGGCGGAAATCCGTCGCCAGGACCAGGCCCTCGACCAGTTGAGTGCGGCGATCCGCGCCTACCTG
GCAGACCTCGGCCAGGACGGCCTCGGCGACAGCGACGCCGATCGTGCCCAGGAAATCCTCCTGTTCGCCATC
AACATCGAGCACATCGGCGATCTCGTCGCCAACAGCCTGCTGCCCCTGGCGATGCGCTGGGCCGGGCGCAGC
CGCGCCGGCAGCGAGTTCGAGCTGGGCCGCATGTTGCCGTTGCAGGCGGCGATCGAGGAGAGCCTGCACCTG
GCGATCAGCGCGTTCCTTCGCGAAGACCTGGACGCCGCGCTGCGCCTGGTGGCGCGCAAGAAGTTGCTGCAG
CGACTGGAGGCCGATGCCAGTCGCGAGCGCTTCCGTCGCCTGCGCGACGATCGCGGTGCCTGGGTGGAGTCC
GGTGACGTGTTCCAGCGCATTCTCCGCGACTACCGACGCATCCACCATCATGTCACCGCCCTGGCCTATCCG
CTGCTCGAACGCAGCGGCATCGATCCGATGGCGAAGCGGCCGGACGAGCCAGGGCAAGGGGAGGGATCGGCA
TGCGCCTCCTGA
Translation:
MLGTILLINLAGAVALLLWGTHMVSSGVLRGFGTALRNWLGRHLGNRWLALLAGLGITGLLQSSTATSLMAA
SFTASGTLGLAPALAVMLGANVGTTLVVQLLSFDTSLLAPLALLSGLLLFRLGDGPRLESLGQCLIGLGLML
LALALLGHSLQQIEASPAFVAVIHGLEGDPLIALLLAALLTWACHSSVAVVLLVASLAQAGLVSLPIALALV
LGANLGGALPALGVAGSRVARRLPLGNLLVRLLGCLLVLPWLTALAQPANALGGAAAVWFHSAFNLALALLA
IGFTGPLAALLARLLPEEAQSDDPGMPRYLDEAGLEVANIGLANATREVLRLADMASLMLRATSGLLQRPEA
KVVAEIRRQDQALDQLSAAIRAYLADLGQDGLGDSDADRAQEILLFAINIEHIGDLVANSLLPLAMRWAGRS
RAGSEFELGRMLPLQAAIEESLHLAISAFLREDLDAALRLVARKKLLQRLEADASRERFRRLRDDRGAWVES
GDVFQRILRDYRRIHHHVTALAYPLLERSGIDPMAKRPDEPGQGEGSACAS*
AnnotationID:689GeneID:680
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 06:06:57
Gene Name:
Confidence Code:3
GeneProduct:putative Na+/phosphate symporter
Cell Localization:()
Synonyms:PA4822
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1283
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1283, NptA, Na+/phosphate symporter 
[Inorganic ion transport and metabolism]
CD-Length = 533 residues, 100.0% aligned
Score =  464 bits (1195), Expect = 1e-131
Identities = 238/538 (44%), Positives = 324/538 (60%), Gaps = 10/538 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1363




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18505




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35233




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:680_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:680
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1145
                           PA4822_tr
                           translation of PA4822
                           555
                           98.91
                           99.09
                           0
                           2702.0
     

     
     
42500
                           gb|AAG08207.1|AE004895_7
                           (AE004895) hypothetical protein PA4822 [Pseudomonas aeruginosa PAO1]
                           555
                           98.91
                           99.09
                           0
                           2702.0
     

     
     
42501
                           dbj|BAC49709.1|
                           (AP005951) bll4444 [Bradyrhizobium japonicum USDA 110]
                           573
                           43.45
                           60.90
                           28
                           1110.0
     

     
     
42502
                           emb|CAE41553.1|
                           (BX640414) putative membrane protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           579
                           43.35
                           56.82
                           50
                           1020.0
     

     
     
42504
                           emb|CAE37173.1|
                           (BX640428) putative membrane protein [Bordetella parapertussis]
                           579
                           43.35
                           56.64
                           51
                           1008.0
     

     






      

          
GC ORFID: 43682How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4822Glimmer Score: 

          
Start: 4948556Stop: 4946889

          
Length: 1668


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4822 translation of PA4822Homolog Bit Score 1045.0

          
Other Homologs:  t_PA4822 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGGGAACCATCCTCCTGATCAACCTGGCCGGTGCCGTGGCCCTTCTGTTGTGGGGCACGCACATGGTC 
TCCAGCGGCGTGCTGCGCGGTTTCGGCACTGCGCTGCGCAACTGGCTCGGCCGCCACCTGGGCAACCGCTGG 
CTGGCCCTGCTCGCCGGGCTCGGCATCACCGGCCTGCTGCAGAGCAGCACCGCCACCAGTCTGATGGCAGCG 
TCCTTCACCGCCAGTGGCACCCTGGGCCTGGCGCCGGCGCTGGCAGTGATGCTCGGCGCCAACGTCGGCACC 
ACTCTGGTGGTGCAACTGCTCAGCTTCGACACCTCGTTGCTGGCGCCGCTGGCCCTGCTGTCCGGCCTGCTG 
CTGTTCCGCCTGGGCGACGGTCCGCGCCTGGAGAGCCTTGGCCAGTGCCTGATCGGACTCGGCCTGATGCTT 
CTGGCGCTGGCGTTGCTCGGCCATTCCCTGCAGCAGATCGAGGCCTCGCCAGCCTTTGTCGCGGTGATCCAC 
GGCCTCGAAGGCGATCCGCTGATCGCCCTGCTGCTCGCCGCGCTGCTGACCTGGGCCTGCCATTCCAGTGTC 
GCGGTGGTACTGCTGGTGGCGTCCCTGGCCCAGGCCGGACTGGTCTCGCTGCCCATCGCCCTGGCCCTGGTG 
CTCGGTGCCAACCTCGGCGGCGCCTTGCCGGCGCTGGGGGTGGCCGGTAGCCGGGTGGCGCGGCGCCTGCCG 
TTGGGCAACCTGCTGGTGCGCCTGCTCGGTTGCCTGCTGGTGCTGCCCTGGCTGACGGCGCTGGCGCAACCG 
GCCAACGCACTCGGCGGTGCGGCGGCGGTCTGGTTCCACAGTGCTTTCAACCTGGCCCTGGCACTGCTGGCG 
ATCGGCTTCACCGGACCGCTTGCGGCGCTGCTCGCGCGCCTGTTGCCGGAAGAGGCGCAGTCCGACGACCCG 
GGCATGCCGCGCTACCTCGACGAAGCCGGGCTGGAGGTGGCCAACATCGGCCTGGCCAACGCTACTCGCGAA 
GTCCTGCGGCTGGCCGACATGGCCAGTCTGATGCTGCGCGCCACCAGCGGCCTGTTGCAGCGACCGGAGGCG 
AAGGTGGTGGCGGAAATCCGTCGCCAGGACCAGGCCCTCGACCAGTTGAGTGCGGCGATCCGCGCCTACCTG 
GCAGACCTCGGCCAGGACGGCCTCGGCGACAGCGACGCCGATCGTGCCCAGGAAATCCTCCTGTTCGCCATC 
AACATCGAGCACATCGGCGATCTCGTCGCCAACAGCCTGCTGCCCCTGGCGATGCGCTGGGCCGGGCGCAGC 
CGCGCCGGCAGCGAGTTCGAGCTGGGCCGCATGTTGCCGTTGCAGGCGGCGATCGAGGAGAGCCTGCACCTG 
GCGATCAGCGCGTTCCTTCGCGAAGACCTGGACGCCGCGCTGCGCCTGGTGGCGCGCAAGAAGTTGCTGCAG 
CGACTGGAGGCCGATGCCAGTCGCGAGCGCTTCCGTCGCCTGCGCGACGATCGCGGTGCCTGGGTGGAGTCC 
GGTGACGTGTTCCAGCGCATTCTCCGCGACTACCGACGCATCCACCATCATGTCACCGCCCTGGCCTATCCG 
CTGCTCGAACGCAGCGGCATCGATCCGATGGCGAAGCGGCCGGACGAGCCAGGGCAAGGGGAGGGATCGGCA 
TGCGCCTCCTGA