ViewGene
Locus Name:
GeneID:
Location:

GeneID:68
TrivialName: PA14_59940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59940
PAO1 Ortholog Locus:
Sequence Length:2943
Protein Length:980
Start: 5337054
Stop: 5339996
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84149.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 980/980 (100%), Positives = 980/980 (100%)
Sequence:
ATGGGCTTTTTTCAAACCCTTCTGCGCGGTCGCACACAGCCTCAGTCGGTACCGGCAGACGCTCCCGAAGAT
TCAGGAGCGCTGGACGTAGCGGCCGCGGAAGAAGCGACTGAGCGCTATCTGGCGCGACTGGCCGCCATGGGT
ATTCCTCTGCCCAACACCGGGAGCAAGAATGGCGCCACGCAGGCCGAAGCGTCACGCCTCTACGATCACGAC
CCATCGTTCGTAGACCTGCTGCCCTGGGCTGAGTACCTGCCCGACGAGCAAGTGATGCTCCTGGAGGATGGG
CGTTCGCGCGCCGCATTCTTCGAACTGGTGCCCTTGGGCACCGAGGGCCGCGATCCCAATTGGATGCAGAAC
GCCCGGGACGCATTGAAAGAAGCCCTGCAGAACTCCTTCGACGAGCACGAAACCTCACCCTGGATTGTCCAG
TTCTACGCCCAGGACGAGATCAGCTGGGACAATTTCCAGGAGCAGTTGAGGCAGTACGTCCATCCTCGAGCG
CGAGGATCGGCCTTCAGCGAGATGTACCTGGCGCTCATGAAGCATCACCTGGAGGGCATTTCGAAGCCGGGC
GGACTGTTCGTCGACACCGCCGTCAGCAAGCTGCCCTGGCGAGGACAACAGCGCCGCGTGCGGATGGTCGTC
TACCGCCGGATCCGCAAGGAGGATGCGCAGATTCGCGGACAGGACCCGGCGGCGTACCTGAAATCCATCTGC
GAGCGTATCCAAGGCGGCCTGGCGAACGCCGGCATCGTCGCTTCGCGCATGGGCGGACAGGAGATCAGGAAC
TGGTTGATCCGCTGGTTCAACCCGCACCCGGATCACCTCGGCCAGGCCGAGGCGGACCTACGTCGCTTCTAC
GAACTGGTATGCCGTCCGGACGAACCGATCCTGCAGGATGAATTGCCACTGGCCGACGGCACTGACTTCTCC
CAGAACCTGTTCTATCGGCAGCCTGTTTCCGATGCCACCCAGGGCGTATGGCTCTTCGATGCCATGCCGCAC
CGAGTGATTGTGGTCGACCAGTTGAACAAAGCGCCGCTGACAGGCCACTTCACCGGCGAGACGCTCAAAGGC
GATGGCCTCAACGCCCTGTTCGATCGAATGCCCGAGGACACGCTGCTGTGCATCACCATGGTCGTGACGCCG
CAGGACATGCTGGAAGGGCATCTGCAGCAGCTCTCGAAAAAGGCCGTTGGTGACACCCAGGCCTCGATCCAC
ACCCGCGAGGACGTGGCCACCGTTCGACGCCTGATCGGCCGGGAGCACAAGCTCTATCGCGGAGCGATCGCT
CTGTTCGTGCGCGGCCGCGACCATACCCAGTTGGAGGAACGCTGCATCACCCTGAGCAACGTACTGCTCGGC
GCCGGCCTGGTGCCGGTCGAACCGCAGAACGAAGTCGGACCGCTGAACAGCTACCTGCGCTGGCTCCCCTCA
AACTTCGATCCAAACGAGAAGCGAGCCCTGGAGTGGTACACCCAGATGATGTTCGCTCAGCACATCGCCAAC
CTGTCGCCCATCTGGGGGCGCACCACCGGTACCGGACACCCTGGCTTCACGCTGTTCAACCGTGGCGGCGCG
CCGTTGACCTTCGACCCGTTCAACAAGCTGGACCGGCAGATGAATGCCCACGGCTTCATCTTCGGGCCAACT
GGCTCCGGCAAGTCGGCGTCCCTGACCAACCTCATCTGCCAGATGCTCGCCATGTACCTGCCGCGGATGTTC
GTCGCGGAAGCGGGCAACAGCTTCGGCCTGCTGGCCGACTTAGCCAAGCGGTTTGGCCTCTCGGTCCACCGG
GTGCGCCTCGCCCCGGGCTCCGGCGTCAGCCTGGCGCCGTTCGCGGACGCCATCAAGCTGGTCGAGAGCCCC
GACCAAGTGAAGGTGCTGGACGCCGAAGACATCGAGGCCTCGGACTCGGTCCAGGGCAGCAAGGCCGACCTC
GAGGACGACCAGCGAGACATCCTGGGCGAGATGGAGATCGTCGCCCGCCTCATGATTACCGGTGGCGAAGAG
AAGGAAGATGCGCGCCTGACCCGTGCCGATCGCAGCGCCGTCCGCCAGGCGATCCTGGCGGCGGCCAGGACC
TGCGCCGCCGCGAACCGCACGGTACTGACCCAAGACGTGCGCGATGCGCTCTACGAGGCCTCCAGGAGCGAT
AGCACCGCGCCAGAACGCCGCGCGCGGATCGCCGAAATGGCGGAAGCCATGCAGATGTTCTGCATGGGCGCC
GACGGCGAGATGTTCAATCGCGAAGGCACGCCCTGGCCTGAGGCCGACCTTACCGTGGTGGATTTCGCAACG
TACGCGCGCGAAGGCTACGCCGCCCAGCTCGGGATCGCCTACATCTCGCTGCTGAACACCGTGAACAACATC
GCCGAACGCGACCAGTTCAAGGGCCGGCCAATCGTCAAGATCACCGATGAGGGGCACATCATCACCAAGCAC
CCGCTGCTGCTGCCCTACGCCATGAAGATCACCAAGATGTGGCGGAAACTGGGCGCCTGGTTCTGGCTCGCC
ACCCAGAACATCGACGACATCCCAGCCTCCGGGGCGCCGATGCTGAACATGATCGAGTGGTGGTTGTGCCTG
AACATGCCCCCCGACGAAGTAGAGAAGATATCCAGGTTCCGCGAGCTGTCGCCGGCGCAGAAGTCGATGATG
CTCTCGGCCCGCAAGGAAAGCGGCAAGTTCACCGAGGGCGTGCTCCTGGCCAAGGGCAAAGAATACCTCGTC
CGTGTGGTTCCCCCGAGTCTCTACCTGGCCCTGGCCATGACCGAAAACGAAGAAAAGAACCAGCGCTACAAC
ATCATGCAAGCCACCGGCTGCGACGAGCTCGAGGCGGCCTTGCAGGTCGCAGCGGATCTCGACAAGGCGCGC
GGCCTGCCACCCTTCCCCATTGTTTTCCCAGACCAACCGGCAGTGGAGTGCCAGGACGAATGA
Translation:
MGFFQTLLRGRTQPQSVPADAPEDSGALDVAAAEEATERYLARLAAMGIPLPNTGSKNGATQAEASRLYDHD
PSFVDLLPWAEYLPDEQVMLLEDGRSRAAFFELVPLGTEGRDPNWMQNARDALKEALQNSFDEHETSPWIVQ
FYAQDEISWDNFQEQLRQYVHPRARGSAFSEMYLALMKHHLEGISKPGGLFVDTAVSKLPWRGQQRRVRMVV
YRRIRKEDAQIRGQDPAAYLKSICERIQGGLANAGIVASRMGGQEIRNWLIRWFNPHPDHLGQAEADLRRFY
ELVCRPDEPILQDELPLADGTDFSQNLFYRQPVSDATQGVWLFDAMPHRVIVVDQLNKAPLTGHFTGETLKG
DGLNALFDRMPEDTLLCITMVVTPQDMLEGHLQQLSKKAVGDTQASIHTREDVATVRRLIGREHKLYRGAIA
LFVRGRDHTQLEERCITLSNVLLGAGLVPVEPQNEVGPLNSYLRWLPSNFDPNEKRALEWYTQMMFAQHIAN
LSPIWGRTTGTGHPGFTLFNRGGAPLTFDPFNKLDRQMNAHGFIFGPTGSGKSASLTNLICQMLAMYLPRMF
VAEAGNSFGLLADLAKRFGLSVHRVRLAPGSGVSLAPFADAIKLVESPDQVKVLDAEDIEASDSVQGSKADL
EDDQRDILGEMEIVARLMITGGEEKEDARLTRADRSAVRQAILAAARTCAAANRTVLTQDVRDALYEASRSD
STAPERRARIAEMAEAMQMFCMGADGEMFNREGTPWPEADLTVVDFATYAREGYAAQLGIAYISLLNTVNNI
AERDQFKGRPIVKITDEGHIITKHPLLLPYAMKITKMWRKLGAWFWLATQNIDDIPASGAPMLNMIEWWLCL
NMPPDEVEKISRFRELSPAQKSMMLSARKESGKFTEGVLLAKGKEYLVRVVPPSLYLALAMTENEEKNQRYN
IMQATGCDELEAALQVAADLDKARGLPPFPIVFPDQPAVECQDE*
AnnotationID:78GeneID:68
AnnotatorUID: diggins
Modification Date/Time: 2006-01-24 06:06:32
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:139




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17078




  
Author/Investigator(s):
        





  
Title:
        CDD-search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:NCBI CD-68.htm


    		




 
URL:

















    ReferenceID:17281




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:68
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
13358
                           gb|AAP84149.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           980
                           99.99
                           99.99
                           0
                           5113.0
     

     
     
13359
                           gb|AAO54394.1|
                           (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           983
                           61.13
                           73.85
                           97
                           3214.0
     

     
     
13361
                           emb|CAE92911.1|
                           (AJ617740) conserved hypothetical protein with VirB4 domain [Pseudomonas putida]
                           984
                           60.16
                           73.57
                           33
                           3095.0
     

     
     
13360
                           gb|AAN62279.1|AF440524_66
                           (AF440524) hypothetical protein [Pseudomonas aeruginosa]
                           991
                           59.93
                           73.56
                           47
                           3095.0
     

     
     
13363
                           gb|AAN62141.1|AF440523_48
                           (AF440523) hypothetical protein [Pseudomonas aeruginosa]
                           991
                           58.12
                           71.14
                           59
                           2972.0
     

     






      

          
GC ORFID: 43070How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL022Glimmer Score: 

          
Start: 4600733Stop: 4603675

          
Length: 2943


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL022 980 Homolog: XAC2274 / Hypothetical protein / X.axonopodis pv. citri / 306 (AAM37127) translation of RL022Homolog Bit Score 1974.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1644 (ORF: BLASTX 1346.0), t_RL022 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCTTTTTTCAAACCCTTCTGCGCGGTCGCACACAGCCTCAGTCGGTACCGGCAGACGCTCCCGAAGAT 
TCAGGAGCGCTGGACGTAGCGGCCGCGGAAGAAGCGACTGAGCGCTATCTGGCGCGACTGGCCGCCATGGGT 
ATTCCTCTGCCCAACACCGGGAGCAAGAATGGCGCCACGCAGGCCGAAGCGTCACGCCTCTACGATCACGAC 
CCATCGTTCGTAGACCTGCTGCCCTGGGCTGAGTACCTGCCCGACGAGCAAGTGATGCTCCTGGAGGATGGG 
CGTTCGCGCGCCGCATTCTTCGAACTGGTGCCCTTGGGCACCGAGGGCCGCGATCCCAATTGGATGCAGAAC 
GCCCGGGACGCATTGAAAGAAGCCCTGCAGAACTCCTTCGACGAGCACGAAACCTCACCCTGGATTGTCCAG 
TTCTACGCCCAGGACGAGATCAGCTGGGACAATTTCCAGGAGCAGTTGAGGCAGTACGTCCATCCTCGAGCG 
CGAGGATCGGCCTTCAGCGAGATGTACCTGGCGCTCATGAAGCATCACCTGGAGGGCATTTCGAAGCCGGGC 
GGACTGTTCGTCGACACCGCCGTCAGCAAGCTGCCCTGGCGAGGACAACAGCGCCGCGTGCGGATGGTCGTC 
TACCGCCGGATCCGCAAGGAGGATGCGCAGATTCGCGGACAGGACCCGGCGGCGTACCTGAAATCCATCTGC 
GAGCGTATCCAAGGCGGCCTGGCGAACGCCGGCATCGTCGCTTCGCGCATGGGCGGACAGGAGATCAGGAAC 
TGGTTGATCCGCTGGTTCAACCCGCACCCGGATCACCTCGGCCAGGCCGAGGCGGACCTACGTCGCTTCTAC 
GAACTGGTATGCCGTCCGGACGAACCGATCCTGCAGGATGAATTGCCACTGGCCGACGGCACTGACTTCTCC 
CAGAACCTGTTCTATCGGCAGCCTGTTTCCGATGCCACCCAGGGCGTATGGCTCTTCGATGCCATGCCGCAC 
CGAGTGATTGTGGTCGACCAGTTGAACAAAGCGCCGCTGACAGGCCACTTCACCGGCGAGACGCTCAAAGGC 
GATGGCCTCAACGCCCTGTTCGATCGAATGCCCGAGGACACGCTGCTGTGCATCACCATGGTCGTGACGCCG 
CAGGACATGCTGGAAGGGCATCTGCAGCAGCTCTCGAAAAAGGCCGTTGGTGACACCCAGGCCTCGATCCAC 
ACCCGCGAGGACGTGGCCACCGTTCGACGCCTGATCGGCCGGGAGCACAAGCTCTATCGCGGAGCGATCGCT 
CTGTTCGTGCGCGGCCGCGACCATACCCAGTTGGAGGAACGCTGCATCACCCTGAGCAACGTACTGCTCGGC 
GCCGGCCTGGTGCCGGTCGAACCGCAGAACGAAGTCGGACCGCTGAACAGCTACCTGCGCTGGCTCCCCTCA 
AACTTCGATCCAAACGAGAAGCGAGCCCTGGAGTGGTACACCCAGATGATGTTCGCTCAGCACATCGCCAAC 
CTGTCGCCCATCTGGGGGCGCACCACCGGTACCGGACACCCTGGCTTCACGCTGTTCAACCGTGGCGGCGCG 
CCGTTGACCTTCGACCCGTTCAACAAGCTGGACCGGCAGATGAATGCCCACGGCTTCATCTTCGGGCCAACT 
GGCTCCGGCAAGTCGGCGTCCCTGACCAACCTCATCTGCCAGATGCTCGCCATGTACCTGCCGCGGATGTTC 
GTCGCGGAAGCGGGCAACAGCTTCGGCCTGCTGGCCGACTTAGCCAAGCGGTTTGGCCTCTCGGTCCACCGG 
GTGCGCCTCGCCCCGGGCTCCGGCGTCAGCCTGGCGCCGTTCGCGGACGCCATCAAGCTGGTCGAGAGCCCC 
GACCAAGTGAAGGTGCTGGACGCCGAAGACATCGAGGCCTCGGACTCGGTCCAGGGCAGCAAGGCCGACCTC 
GAGGACGACCAGCGAGACATCCTGGGCGAGATGGAGATCGTCGCCCGCCTCATGATTACCGGTGGCGAAGAG 
AAGGAAGATGCGCGCCTGACCCGTGCCGATCGCAGCGCCGTCCGCCAGGCGATCCTGGCGGCGGCCAGGACC 
TGCGCCGCCGCGAACCGCACGGTACTGACCCAAGACGTGCGCGATGCGCTCTACGAGGCCTCCAGGAGCGAT 
AGCACCGCGCCAGAACGCCGCGCGCGGATCGCCGAAATGGCGGAAGCCATGCAGATGTTCTGCATGGGCGCC 
GACGGCGAGATGTTCAATCGCGAAGGCACGCCCTGGCCTGAGGCCGACCTTACCGTGGTGGATTTCGCAACG 
TACGCGCGCGAAGGCTACGCCGCCCAGCTCGGGATCGCCTACATCTCGCTGCTGAACACCGTGAACAACATC 
GCCGAACGCGACCAGTTCAAGGGCCGGCCAATCGTCAAGATCACCGATGAGGGGCACATCATCACCAAGCAC 
CCGCTGCTGCTGCCCTACGCCATGAAGATCACCAAGATGTGGCGGAAACTGGGCGCCTGGTTCTGGCTCGCC 
ACCCAGAACATCGACGACATCCCAGCCTCCGGGGCGCCGATGCTGAACATGATCGAGTGGTGGTTGTGCCTG 
AACATGCCCCCCGACGAAGTAGAGAAGATATCCAGGTTCCGCGAGCTGTCGCCGGCGCAGAAGTCGATGATG 
CTCTCGGCCCGCAAGGAAAGCGGCAAGTTCACCGAGGGCGTGCTCCTGGCCAAGGGCAAAGAATACCTCGTC 
CGTGTGGTTCCCCCGAGTCTCTACCTGGCCCTGGCCATGACCGAAAACGAAGAAAAGAACCAGCGCTACAAC 
ATCATGCAAGCCACCGGCTGCGACGAGCTCGAGGCGGCCTTGCAGGTCGCAGCGGATCTCGACAAGGCGCGC 
GGCCTGCCACCCTTCCCCATTGTTTTCCCAGACCAACCGGCAGTGGAGTGCCAGGACGAATGA