ViewGene
Locus Name:
GeneID:
Location:

GeneID:6788
TrivialName: PA14_64430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64430
PAO1 Ortholog Locus:
Sequence Length:696
Protein Length:231
Start: 5739839
Stop: 5740534
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD77063.1| (BX294152) hypothetical protein [Pirellula sp.]
Identities = 74/258 (28%), Positives = 111/258 (43%), Gaps = 32/258 (12%)
Sequence:
ATGACCCGCACTCCCGACCAGGATTTCCAGCGCGACTTCCAGGCCGCCTACGCGCGCCTCGCGGTCGCCGCC
GAAGGCAGCGCGGAGCAGGCCGGGGCGCTGGCCGACACCCTCGGCGCCACCCAGCTGGAATACAGCCGGGTG
CGCGGCGTCAGCCTGGAAGACCAGTTGCGCTTCGCCCATGTGCTCAACCGCGCCTGCGAAAACGGCGCGCAA
CTGGACGCCCGCGGCTTCCTCGCCCGCCTGGGCGCCGACGACCTGCAGGCGCTGCAGCGCAACATGGGCCTG
GCCGAGCCGATCCGGGTCGAGGCGCTGAGCGAGGAAGGCGCGCGCAACCTGCTGCTGCCGGAAGGCTACAGC
GTCGACCTGGACGGCGACGGCATCACCGAGGTGGGCGCCGCGAAGATCCGCCACTTCCCCCCGCGCGACGCA
CCGCAGGCCTTCCTCGACCAGTGGCTGGCGCTCACCGCCGGCATGGACGGCGCCGCCTATTCGAACGCCCGC
GACGGGTTGCAATGGGCTTTCGATATCCGCGCCATGGCCGGCCAGCCCCTGGCCACCGACCAGTTGGCCAGC
TACCGCACGGCGGTGGACGACTACCTGGGCATGCTCGCCGAGCACCGCCACGCCCTGGTTCCCGGCCAGTAC
GAACGCGACCTGCCGCTGTACCAGGCGCTGCGCCAGCGCCTGGCCTGA
Translation:
MTRTPDQDFQRDFQAAYARLAVAAEGSAEQAGALADTLGATQLEYSRVRGVSLEDQLRFAHVLNRACENGAQ
LDARGFLARLGADDLQALQRNMGLAEPIRVEALSEEGARNLLLPEGYSVDLDGDGITEVGAAKIRHFPPRDA
PQAFLDQWLALTAGMDGAAYSNARDGLQWAFDIRAMAGQPLATDQLASYRTAVDDYLGMLAEHRHALVPGQY
ERDLPLYQALRQRLA*
AnnotationID:6789GeneID:6788
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 11:11:52
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:13303




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30659




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49790How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5003520Stop: 5004215

          
Length: 696


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGACCCGCACTCCCGACCAGGATTTCCAGCGCGACTTCCAGGCCGCCTACGCGCGCCTCGCGGTCGCCGCC 
GAAGGCAGCGCGGAGCAGGCCGGGGCGCTGGCCGACACCCTCGGCGCCACCCAGCTGGAATACAGCCGGGTG 
CGCGGCGTCAGCCTGGAAGACCAGTTGCGCTTCGCCCATGTGCTCAACCGCGCCTGCGAAAACGGCGCGCAA 
CTGGACGCCCGCGGCTTCCTCGCCCGCCTGGGCGCCGACGACCTGCAGGCGCTGCAGCGCAACATGGGCCTG 
GCCGAGCCGATCCGGGTCGAGGCGCTGAGCGAGGAAGGCGCGCGCAACCTGCTGCTGCCGGAAGGCTACAGC 
GTCGACCTGGACGGCGACGGCATCACCGAGGTGGGCGCCGCGAAGATCCGCCACTTCCCCCCGCGCGACGCA 
CCGCAGGCCTTCCTCGACCAGTGGCTGGCGCTCACCGCCGGCATGGACGGCGCCGCCTATTCGAACGCCCGC 
GACGGGTTGCAATGGGCTTTCGATATCCGCGCCATGGCCGGCCAGCCCCTGGCCACCGACCAGTTGGCCAGC 
TACCGCACGGCGGTGGACGACTACCTGGGCATGCTCGCCGAGCACCGCCACGCCCTGGTTCCCGGCCAGTAC 
GAACGCGACCTGCCGCTGTACCAGGCGCTGCGCCAGCGCCTGGCCTGA