ViewGene

Locus Name:
GeneID:
Location:

GeneID:678
TrivialName: PA14_56130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56130
PAO1 Ortholog Locus:PA4320
Sequence Length:1572
Protein Length:523
Start: 5011910
Stop: 5013481
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07708.1|AE004848_7 (AE004848) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 517/523 (98%), Positives = 519/523 (99%)
Sequence:
ATGCGCCTGACTGACGCCAGCGTGGCGATTCGACCACGCAGCGCCTGGGAAGCGCTCGACCTCGGCATCCTC
CTGGCGCATCGCCATGCGCGCCTGCTGATGGGCAGCTGGGCGTTGCTGACCCTGCCGCTGTTCGCCGTGCTC
AGCCTCCTGCTGTGGCAGCATCCGACCCTGGCGATCCTGATCTTCTGGTGGCTCAAGCCGGCCTTCGAACGG
CTGCCGCTGTACATTCTCTCGCACGCCCTGTTCGGCGATACGCCAACCCTGAAGCAGGCCCTGCGCGCCTAT
CCCGCCCTGCTGAGGAAACAGTTGCCGGCCAGCCTGCTGTGGCGCCGCTTCAGTCCGACGCGCAGCTTCGAC
CTGCCGGTCCTGCAACTGGAAGGGCTCGCCGGGGAGCCCCGCAGCCAGCGCCTGATCGTATTGTCCCAGCGC
AACGCCGGCGGCGCGACCTGGCTGACCGTGGTCGGCGTGCACCTGGAAATGGCGCTCTGGGCCGGCTTCGCC
ATGCTTCTCTACCTGCTGATCCCGGCGCAGAACGAGATCGACTGGAACTGGCAGAGCCTGCTCGACCCGGAA
GCCGGCGAGTGGCTCTGGCTGGAGCACCTCTCGAACCTGCTCTACGTCCTGGTGCTGGTAGTCTGGGAGCCG
ATCTACGTGGCCTGCGGCTTCACCCTCTACCTGAACCGGCGCACCGAACTGGAGGCCTGGGACATCGAGCTG
GTGTTCCGCCGCCTGCGCCAGCGTCTGGTCGGCAGCGCCTATGTCCTGCTGCTCGGCCTGGCCGCTTCGCTG
GCCTGGCTGCCCGCCCCTTCCGCCTACGCCGAGCCGGCGGCCGCCGCCAGCGCCGGCGACGCCGAGCTGCCG
CCCGAGCAGGCCCGCCTGCTGCGGCAGAAACTCAACAGCGAACAGGCCGGCAAGCAGATCCGGGCGATCGTC
GACGGCGCGCCGTTCAAGAACAGCGAGACCGTTACGGGCTGGCGCTTCGGCGACAAGACCGAGAAAAAGGAC
AGCCGCAAGGAGGACGAAGAGCGGCTCAAGGCATTCTTCGAGGCCCTGGCCAACTGGGTGCCGTTCCGTCAC
GCGGCGCAGGTCATCGAAGTGCTGCTCTGGGCGCTGCTGTTCAGCGCGGTGTTCCTGCtGGTCTGGCGCTAC
CGTGAATGGcTGCGCcTGTTCGTCGGCAACCTGGGCTTGCCGCAACGGGCCCGCCGCGAAGCGCCGACGGTG
ATGTTCGGCCTCGATCTCAGTCCGGAAAGCCTGCCCGACGACATCGCCGGCAACGCCGAACGGCTCTGGAAC
GAGAAACCACGGGAAGCCCTCGGCCTGCTCTACCGCGGGCTGCTCAGCCGACTGCTGCATGACTACCGCCTG
CCGTTGAAGGGCTCCCATACCGAGGGCGAGGTCCTGCGCCTGGTCGAAGGACTGGAGCAACAACGGCCGCTG
CTGCACTACAGCCAACTGCTGACCGCCCAATGGCAGGCGCTCGCCTACGGCCACCGGCTGCCGGCCGACGAC
GCTCGCCAGCGCCTCTGCGATGGCTGGCGCAGCCTTTTCGCCGCGGGAGCCAAGCCATGA
Translation:
MRLTDASVAIRPRSAWEALDLGILLAHRHARLLMGSWALLTLPLFAVLSLLLWQHPTLAILIFWWLKPAFER
LPLYILSHALFGDTPTLKQALRAYPALLRKQLPASLLWRRFSPTRSFDLPVLQLEGLAGEPRSQRLIVLSQR
NAGGATWLTVVGVHLEMALWAGFAMLLYLLIPAQNEIDWNWQSLLDPEAGEWLWLEHLSNLLYVLVLVVWEP
IYVACGFTLYLNRRTELEAWDIELVFRRLRQRLVGSAYVLLLGLAASLAWLPAPSAYAEPAAAASAGDAELP
PEQARLLRQKLNSEQAGKQIRAIVDGAPFKNSETVTGWRFGDKTEKKDSRKEDEERLKAFFEALANWVPFRH
AAQVIEVLLWALLFSAVFLLVWRYREWLRLFVGNLGLPQRARREAPTVMFGLDLSPESLPDDIAGNAERLWN
EKPREALGLLYRGLLSRLLHDYRLPLKGSHTEGEVLRLVEGLEQQRPLLHYSQLLTAQWQALAYGHRLPADD
ARQRLCDGWRSLFAAGAKP*
AnnotationID:687GeneID:678
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 13:01:09
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4320
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:1359
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18501
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:678

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1141 PA4320_tr translation of PA4320 523 98.85 99.23 0 2703.0
42458 gb|AAG07708.1|AE004848_7 (AE004848) hypothetical protein PA4320 [Pseudomonas aeruginosa PAO1] 523 98.85 99.23 0 2703.0
42459 gb|AAO57770.1| (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 545 55.22 69.54 37 1498.0
GC ORFID: 43680How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4320Glimmer Score:
Start: 4275586Stop: 4277157
Length: 1572
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4320 translation of PA4320Homolog Bit Score 1045.0
Other Homologs: psyr_15may02_Scaffold12_revised_gene1948 (ORF: BLASTX 581.0), t_PA4320 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCCTGACTGACGCCAGCGTGGCGATTCGACCACGCAGCGCCTGGGAAGCGCTCGACCTCGGCATCCTC
CTGGCGCATCGCCATGCGCGCCTGCTGATGGGCAGCTGGGCGTTGCTGACCCTGCCGCTGTTCGCCGTGCTC
AGCCTCCTGCTGTGGCAGCATCCGACCCTGGCGATCCTGATCTTCTGGTGGCTCAAGCCGGCCTTCGAACGG
CTGCCGCTGTACATTCTCTCGCACGCCCTGTTCGGCGATACGCCAACCCTGAAGCAGGCCCTGCGCGCCTAT
CCCGCCCTGCTGAGGAAACAGTTGCCGGCCAGCCTGCTGTGGCGCCGCTTCAGTCCGACGCGCAGCTTCGAC
CTGCCGGTCCTGCAACTGGAAGGGCTCGCCGGGGAGCCCCGCAGCCAGCGCCTGATCGTATTGTCCCAGCGC
AACGCCGGCGGCGCGACCTGGCTGACCGTGGTCGGCGTGCACCTGGAAATGGCGCTCTGGGCCGGCTTCGCC
ATGCTTCTCTACCTGCTGATCCCGGCGCAGAACGAGATCGACTGGAACTGGCAGAGCCTGCTCGACCCGGAA
GCCGGCGAGTGGCTCTGGCTGGAGCACCTCTCGAACCTGCTCTACGTCCTGGTGCTGGTAGTCTGGGAGCCG
ATCTACGTGGCCTGCGGCTTCACCCTCTACCTGAACCGGCGCACCGAACTGGAGGCCTGGGACATCGAGCTG
GTGTTCCGCCGCCTGCGCCAGCGTCTGGTCGGCAGCGCCTATGTCCTGCTGCTCGGCCTGGCCGCTTCGCTG
GCCTGGCTGCCCGCCCCTTCCGCCTACGCCGAGCCGGCGGCCGCCGCCAGCGCCGGCGACGCCGAGCTGCCG
CCCGAGCAGGCCCGCCTGCTGCGGCAGAAACTCAACAGCGAACAGGCCGGCAAGCAGATCCGGGCGATCGTC
GACGGCGCGCCGTTCAAGAACAGCGAGACCGTTACGGGCTGGCGCTTCGGCGACAAGACCGAGAAAAAGGAC
AGCCGCAAGGAGGACGAAGAGCGGCTCAAGGCATTCTTCGAGGCCCTGGCCAACTGGGTGCCGTTCCGTCAC
GCGGCGCAGGTCATCGAAGTGCTGCTCTGGGCGCTGCTGTTCAGCGCGGTGTTCCTGCtGGTCTGGCGCTAC
CGTGAATGGcTGCGCcTGTTCGTCGGCAACCTGGGCTTGCCGCAACGGGCCCGCCGCGAAGCGCCGACGGTG
ATGTTCGGCCTCGATCTCAGTCCGGAAAGCCTGCCCGACGACATCGCCGGCAACGCCGAACGGCTCTGGAAC
GAGAAACCACGGGAAGCCCTCGGCCTGCTCTACCGCGGGCTGCTCAGCCGACTGCTGCATGACTACCGCCTG
CCGTTGAAGGGCTCCCATACCGAGGGCGAGGTCCTGCGCCTGGTCGAAGGACTGGAGCAACAACGGCCGCTG
CTGCACTACAGCCAACTGCTGACCGCCCAATGGCAGGCGCTCGCCTACGGCCACCGGCTGCCGGCCGACGAC
GCTCGCCAGCGCCTCTGCGATGGCTGGCGCAGCCTTTTCGCCGCGGGAGCCAAGCCATGA