ViewGene

Locus Name:
GeneID:
Location:

GeneID:677
TrivialName: PA14_46270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46270
PAO1 Ortholog Locus:PA1405
Sequence Length:1593
Protein Length:530
Start: 4117026
Stop: 4115434
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04794.1|AE004570_2 (AE004570) probable helicase [Pseudomonas aeruginosa PAO1]
Identities = 526/530 (99%), Positives = 527/530 (99%)
Sequence:
ATGATCCTCTGCCGCCAGCCGCTGGCGCGGATCTTTGCCGGTGCCGGCTCGGGCAAGTCGACCACCCTGGTC
CTGCGGGTGGTGTTCATGCTCTGCCACCTGGGGGTCGAGCCGCAGCGGCTGACGGTGATTTCCTTCACCAAC
GCCTCCTGCGCGCAGTTGCGCGAACAATTGCTGCGCGTGCTCGCCCATTGGCAGTACCCGTTCGACGCGGCC
CAGGCGCGGCAGTGCGTGCGCACTTTCCATTCGGCGCTCGGCAGCCTGGCCCGCGAGGTGCTCGGCAATCCG
CGCTGGTTCGAACAACTGGACGACCGCGACCCCGCCGCCGAGCCGGACAACCCCCTTGCCGCCGGACGCCTG
CGTCCGGCCCAGCAGCGCCTGCTGAAGCAGGCCTACCAGCAGTGCTACGCGGCAAGCCCGGCGTTCCGTGCC
AAGACCCACAAGCTGCTGGAACTGCCGCCTCCGGCGGAGCCGGAAGAGGGCGCGCGGCGGCAGCCGAAGGCG
CCGCTGGAGCCGTTCAAGCTGGCCGGCGAGTTCCAGGCGCTGCCGCTGTACGAAGCCTTCCATGCTCAGGCC
GGGTTCGCCGAGAGCCTGGGCCTGTGCGTCGAACGCCTGGACAGAGGCAAGCTGGAATGCGGGCTGCGCGAG
AAGATTTTCGTTGAAGCCATGGCACTGTTCTGGGCGAGGTTCCAGGCGCTGTTGCGCGAGGAGGGCCTGATG
ACCTTCGACGCCGCGTTCCAGCAGCTCGGCGAGCGGATGGCCGGCGGGGCCCTGGCGGAAACGGCGCTGGCG
CCGTTCACCCATCTGCTGATCGACGAGTTCCAGGATGTCTCGCCGCAGATCGTCCTCTGGCTACAGGCGTTG
CACCGTCGCCTGGCAACCCAGGGCACCGCGCCGAGCCTGATGGCCATCGGCGACGACTGGCAGTCGATCTAC
GGCTGGCGCGGCAGTTCGCCGGAGCTGTTCATCGACTTCGACCGGCACTTCCCCTCGCGTGGGCGGGGACGC
AAGAGCGCGCTGCTGGTGCTGGAAACCAACTACCGCTCCGTCGAACCGATCATTCGCGACGGCGAGAAGGTG
CTGGCCGGGGTGCGTTTCAAGCAGGACAAGACCTGCCGCGCGTTCCGCCCGATCCAGCCGGGCGACCATGGC
GTGAAGCTGGTGCAGCGTTTCGACCTGCGTGCGCAACTGCCGAAGCTGCTGGCGGAAATCCGCGCCCAGTGC
GAGCACGCCGCCGCTCGCGAAAGCAGCGAGCGCACCGCGGTGCTGTTGCTGAGCCGGCGCAACGAGCCGTTG
CAGGCGATCCAGGCGGAGTTGGATCGCGCGCTGCCGGTGAAGGGCATGACCATCCATCGCGCCAAGGGCCTC
CAGGCCGAAGTGGCGATCGTCGTCGACGACTGCCTGCCGGGCGAGAAGCATCCGTTGCGCAACGCGCTGTAC
GCGGCATCGGGCTTCTTCCGCAACAGTTACGACCAGGCCATGGAGGACGAAAGCCTGCGCCTGGCCTACGTG
GCGATCACCCGTGGCGTCAGCCGGGTGCTCTGGTACACGCGCAAGGCCCAGGGCGCCACGGCCCTGTTGGCC
CGACGCTGA
Translation:
MILCRQPLARIFAGAGSGKSTTLVLRVVFMLCHLGVEPQRLTVISFTNASCAQLREQLLRVLAHWQYPFDAA
QARQCVRTFHSALGSLAREVLGNPRWFEQLDDRDPAAEPDNPLAAGRLRPAQQRLLKQAYQQCYAASPAFRA
KTHKLLELPPPAEPEEGARRQPKAPLEPFKLAGEFQALPLYEAFHAQAGFAESLGLCVERLDRGKLECGLRE
KIFVEAMALFWARFQALLREEGLMTFDAAFQQLGERMAGGALAETALAPFTHLLIDEFQDVSPQIVLWLQAL
HRRLATQGTAPSLMAIGDDWQSIYGWRGSSPELFIDFDRHFPSRGRGRKSALLVLETNYRSVEPIIRDGEKV
LAGVRFKQDKTCRAFRPIQPGDHGVKLVQRFDLRAQLPKLLAEIRAQCEHAAARESSERTAVLLLSRRNEPL
QAIQAELDRALPVKGMTIHRAKGLQAEVAIVVDDCLPGEKHPLRNALYAASGFFRNSYDQAMEDESLRLAYV
AITRGVSRVLWYTRKAQGATALLARR*
AnnotationID:686GeneID:677
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 06:06:17
Gene Name:
Confidence Code:3
GeneProduct:putative helicase
Cell Localization:()
Synonyms:PA1405
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00580
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN68174.1|AE016450_4 (AE016783) helicase, putative [Pseudomonas putida KT2440]
          Length = 714

 Score =  184 bits (467), Expect = 1e-45
 Identities = 134/384 (34%), Positives = 192/384 (50%), Gaps = 41/384 (10%)
Structural Features:
pfam00580, UvrD-helicase, UvrD/REP helicase.
CD-Length = 496 residues,  80.2% aligned
Score =  121 bits (305), Expect = 2e-28
Identities = 105/480 (21%), Positives = 180/480 (37%), Gaps = 93/480 (19%)
Genomic Context:
Comment:
ReferenceID:1357
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18499
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37393
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:677_cdd.html
URL:
Homologs By Global Alignment
Gene ID:677

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1140 PA1405_tr translation of PA1405 530 99.24 99.43 0 2703.0
42457 gb|AAG04794.1|AE004570_2 (AE004570) probable helicase [Pseudomonas aeruginosa PAO1] 530 99.24 99.43 0 2703.0
GC ORFID: 43679How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1405Glimmer Score:
Start: 836883Stop: 838475
Length: 1593
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1405 translation of PA1405Homolog Bit Score 1045.0
Other Homologs: t_PA1405 (ORF: GLIMMER)
GC ORF Sequence
ATGATCCTCTGCCGCCAGCCGCTGGCGCGGATCTTTGCCGGTGCCGGCTCGGGCAAGTCGACCACCCTGGTC
CTGCGGGTGGTGTTCATGCTCTGCCACCTGGGGGTCGAGCCGCAGCGGCTGACGGTGATTTCCTTCACCAAC
GCCTCCTGCGCGCAGTTGCGCGAACAATTGCTGCGCGTGCTCGCCCATTGGCAGTACCCGTTCGACGCGGCC
CAGGCGCGGCAGTGCGTGCGCACTTTCCATTCGGCGCTCGGCAGCCTGGCCCGCGAGGTGCTCGGCAATCCG
CGCTGGTTCGAACAACTGGACGACCGCGACCCCGCCGCCGAGCCGGACAACCCCCTTGCCGCCGGACGCCTG
CGTCCGGCCCAGCAGCGCCTGCTGAAGCAGGCCTACCAGCAGTGCTACGCGGCAAGCCCGGCGTTCCGTGCC
AAGACCCACAAGCTGCTGGAACTGCCGCCTCCGGCGGAGCCGGAAGAGGGCGCGCGGCGGCAGCCGAAGGCG
CCGCTGGAGCCGTTCAAGCTGGCCGGCGAGTTCCAGGCGCTGCCGCTGTACGAAGCCTTCCATGCTCAGGCC
GGGTTCGCCGAGAGCCTGGGCCTGTGCGTCGAACGCCTGGACAGAGGCAAGCTGGAATGCGGGCTGCGCGAG
AAGATTTTCGTTGAAGCCATGGCACTGTTCTGGGCGAGGTTCCAGGCGCTGTTGCGCGAGGAGGGCCTGATG
ACCTTCGACGCCGCGTTCCAGCAGCTCGGCGAGCGGATGGCCGGCGGGGCCCTGGCGGAAACGGCGCTGGCG
CCGTTCACCCATCTGCTGATCGACGAGTTCCAGGATGTCTCGCCGCAGATCGTCCTCTGGCTACAGGCGTTG
CACCGTCGCCTGGCAACCCAGGGCACCGCGCCGAGCCTGATGGCCATCGGCGACGACTGGCAGTCGATCTAC
GGCTGGCGCGGCAGTTCGCCGGAGCTGTTCATCGACTTCGACCGGCACTTCCCCTCGCGTGGGCGGGGACGC
AAGAGCGCGCTGCTGGTGCTGGAAACCAACTACCGCTCCGTCGAACCGATCATTCGCGACGGCGAGAAGGTG
CTGGCCGGGGTGCGTTTCAAGCAGGACAAGACCTGCCGCGCGTTCCGCCCGATCCAGCCGGGCGACCATGGC
GTGAAGCTGGTGCAGCGTTTCGACCTGCGTGCGCAACTGCCGAAGCTGCTGGCGGAAATCCGCGCCCAGTGC
GAGCACGCCGCCGCTCGCGAAAGCAGCGAGCGCACCGCGGTGCTGTTGCTGAGCCGGCGCAACGAGCCGTTG
CAGGCGATCCAGGCGGAGTTGGATCGCGCGCTGCCGGTGAAGGGCATGACCATCCATCGCGCCAAGGGCCTC
CAGGCCGAAGTGGCGATCGTCGTCGACGACTGCCTGCCGGGCGAGAAGCATCCGTTGCGCAACGCGCTGTAC
GCGGCATCGGGCTTCTTCCGCAACAGTTACGACCAGGCCATGGAGGACGAAAGCCTGCGCCTGGCCTACGTG
GCGATCACCCGTGGCGTCAGCCGGGTGCTCTGGTACACGCGCAAGGCCCAGGGCGCCACGGCCCTGTTGGCC
CGACGCTGA