ViewGene
Locus Name:
GeneID:
Location:

GeneID:676
TrivialName: PA14_51050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51050
PAO1 Ortholog Locus:PA1027
Sequence Length:1590
Protein Length:529
Start: 4536802
Stop: 4535213
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04416.1|AE004535_3 (AE004535) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 526/529 (99%), Positives = 527/529 (99%)
Sequence:
ATGAAAACTCGGAATGACGTGGCGAATAAAGGTCGTTTGTCGCTCCCGGGCAAACCGACTAAAACGAGCGGA
AACGAACAGCCAGGAGAACCTCACATGATCGACGGATTGCTGCGCAGTCTCGGCCTCGACCCCAATGCTTTT
CGCGATGGCGAGCTTGCCGTGCATACCCCCATCGACGGCAGTCGCCTGGCTGCGGTGCCACTGGAGGGGCGC
GCCGCCGTTGCCGCCAAGGTCGAGCGCGCCGAACAGGCGTTCCGTGCCTGGCGCCAGGTGCCGGCGCCGCGC
CGTGGTGAACTGGTGCGGCTGTTCGGCGAGGAATTGCGTCGGCACAAGGCCGAACTCGGCGAACTGGTGTCC
TGGGAGGCGGGCAAGATCACCCAGGAAGGCCTCGGCGAAGTCCAGGAAATGATCGATATCTGCGACTTCGCG
GTGGGCCTCTCGCGCCAGTTGTACGGTCTTACCATCGCATCCGAGCGTCCCGGCCACCACATGCGCGAGACC
TGGCACCCGCTGGGCGTGGTAGGCGTGATCAGCGCGTTCAACTTCCCAGTCGCGGTGTGGTCGTGGAATACC
GCGCTGGCGCTGGTCTGCGGCAATTCCGTGGTCTGGAAGCCTTCGGAGAAGACCCCCCTCACCGCACTGGCC
TGCCAGGCGCTGTTCGAGCGTGCCGCGCGGGCCTTCGGCGGCGATGCGCCGGCGCACCTGAGCCAATTGCTG
ATCGGCGACCGCGAGGCCGGCGAAGCGCTGGTGGACGACCGTCGCGTCGCCCTGGTCAGCGCCACCGGCAGC
ACTCGCATGGGGCGCGAAGTGGCGCCGCGGGTGGCGGCGCGTTTCGCTCGCTGCATCCTCGAACTGGGCGGC
AACAACGCGATGATCCTGGCGCCAAGCGCCGACCTCGACCTGGCGGTGCGCGGCATCCTGTTCGGTGCGGTG
GGCACCGCCGGGCAGCGCTGCACCACCTTGCGCCGGTTAATTGCCCATGAGTCGGTGAAGGACGAGATAGTC
GAGCGCCTCAAGGCAGCCTATTCCAGGGTCCGTATCGGTCATCCGCTGGAGGGCAACCTGGTCGGGCCGCTG
ATCGACGAACGCAGCTACCTGGCCATGCAGGACGCCCTGGCGCGAGCCCGCGAGGAGGGGGGACGGGTGTTC
GGCGGCGAGCGGCAATTGCAGGAGCGCTATCCGGATGCCTACTACGTGTCGCCGGCCATCGTCGAGATGCCG
GGACAGACCGAAGTGGTGCGCACGGAGACCTTCGCCCCGATCCTGTACGTGGTCGGCTACCGCGATTTCGAC
GAGGCCCTGCGCCTGAACAACGAGGTTCCCCAGGGACTGTCGTCGTGCATCTTCACCACCGACCTGCGCGAG
GCGGAACTGTTCCAGGGCGCGGCGGGCAGTGACTGCGGGATCGCCAACGTCAACATCGGCACCAGCGGGGCG
GAAATCGGCGGGGCGTTCGGCGGCGAGAAAGAGACCGGCGGCGGTCGCGAGTCCGGCTCGGACGCCTGGAAG
GCCTACATGCGACGGCAGACCAACACCGTCAACTATTCCCGCGAGCTGCCGCTGGCACAGGGCATCACCTTC
GATTGA
Translation:
MKTRNDVANKGRLSLPGKPTKTSGNEQPGEPHMIDGLLRSLGLDPNAFRDGELAVHTPIDGSRLAAVPLEGR
AAVAAKVERAEQAFRAWRQVPAPRRGELVRLFGEELRRHKAELGELVSWEAGKITQEGLGEVQEMIDICDFA
VGLSRQLYGLTIASERPGHHMRETWHPLGVVGVISAFNFPVAVWSWNTALALVCGNSVVWKPSEKTPLTALA
CQALFERAARAFGGDAPAHLSQLLIGDREAGEALVDDRRVALVSATGSTRMGREVAPRVAARFARCILELGG
NNAMILAPSADLDLAVRGILFGAVGTAGQRCTTLRRLIAHESVKDEIVERLKAAYSRVRIGHPLEGNLVGPL
IDERSYLAMQDALARAREEGGRVFGGERQLQERYPDAYYVSPAIVEMPGQTEVVRTETFAPILYVVGYRDFD
EALRLNNEVPQGLSSCIFTTDLREAELFQGAAGSDCGIANVNIGTSGAEIGGAFGGEKETGGGRESGSDAWK
AYMRRQTNTVNYSRELPLAQGITFD*
AnnotationID:685GeneID:676
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 17:05:59
Gene Name:
Confidence Code:3
GeneProduct:probable aldehyde dehydrogenase
Cell Localization:()
Synonyms:PA1027, pcd
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00171, COG1012
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00171, Aldedh, Aldehyde dehydrogenase family. Score: 410, 2e-115
COG1012, PutA, NAD-dependent aldehyde dehydrogenases. Score: 394, 2e-110






   
Genomic Context:






   
Comment:


















    ReferenceID:1355




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18497




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:676
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1139
                           PA1027_tr
                           translation of PA1027
                           529
                           99.43
                           99.62
                           0
                           2703.0
     

     
     
42426
                           gb|AAG04416.1|AE004535_3
                           (AE004535) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
                           529
                           99.43
                           99.62
                           0
                           2703.0
     

     
     
42427
                           gb|AAN70823.1|AE016726_7
                           (AE016793) aldehyde dehydrogenase family protein [Pseudomonas putida KT2440]
                           529
                           76.74
                           84.31
                           33
                           2100.0
     

     
     
42428
                           gb|AAO55409.1|
                           (AE016862) piperideine-6-carboxylate dehydrogenase [Pseudomonas syringae pv. tomato str. DC3000]
                           529
                           75.42
                           83.74
                           33
                           2082.0
     

     
     
42429
                           emb|CAE37466.1|
                           (BX640429) probable aldehyde dehydrogenase [Bordetella parapertussis]
                           531
                           68.92
                           75.89
                           33
                           1830.0
     

     






      

          
GC ORFID: 43678How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1027Glimmer Score: 

          
Start: 417106Stop: 418695

          
Length: 1590


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1027 translation of PA1027Homolog Bit Score 1045.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7863 (ORF: BLASTX 813.0), t_PA1027 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAACTCGGAATGACGTGGCGAATAAAGGTCGTTTGTCGCTCCCGGGCAAACCGACTAAAACGAGCGGA 
AACGAACAGCCAGGAGAACCTCACATGATCGACGGATTGCTGCGCAGTCTCGGCCTCGACCCCAATGCTTTT 
CGCGATGGCGAGCTTGCCGTGCATACCCCCATCGACGGCAGTCGCCTGGCTGCGGTGCCACTGGAGGGGCGC 
GCCGCCGTTGCCGCCAAGGTCGAGCGCGCCGAACAGGCGTTCCGTGCCTGGCGCCAGGTGCCGGCGCCGCGC 
CGTGGTGAACTGGTGCGGCTGTTCGGCGAGGAATTGCGTCGGCACAAGGCCGAACTCGGCGAACTGGTGTCC 
TGGGAGGCGGGCAAGATCACCCAGGAAGGCCTCGGCGAAGTCCAGGAAATGATCGATATCTGCGACTTCGCG 
GTGGGCCTCTCGCGCCAGTTGTACGGTCTTACCATCGCATCCGAGCGTCCCGGCCACCACATGCGCGAGACC 
TGGCACCCGCTGGGCGTGGTAGGCGTGATCAGCGCGTTCAACTTCCCAGTCGCGGTGTGGTCGTGGAATACC 
GCGCTGGCGCTGGTCTGCGGCAATTCCGTGGTCTGGAAGCCTTCGGAGAAGACCCCCCTCACCGCACTGGCC 
TGCCAGGCGCTGTTCGAGCGTGCCGCGCGGGCCTTCGGCGGCGATGCGCCGGCGCACCTGAGCCAATTGCTG 
ATCGGCGACCGCGAGGCCGGCGAAGCGCTGGTGGACGACCGTCGCGTCGCCCTGGTCAGCGCCACCGGCAGC 
ACTCGCATGGGGCGCGAAGTGGCGCCGCGGGTGGCGGCGCGTTTCGCTCGCTGCATCCTCGAACTGGGCGGC 
AACAACGCGATGATCCTGGCGCCAAGCGCCGACCTCGACCTGGCGGTGCGCGGCATCCTGTTCGGTGCGGTG 
GGCACCGCCGGGCAGCGCTGCACCACCTTGCGCCGGTTAATTGCCCATGAGTCGGTGAAGGACGAGATAGTC 
GAGCGCCTCAAGGCAGCCTATTCCAGGGTCCGTATCGGTCATCCGCTGGAGGGCAACCTGGTCGGGCCGCTG 
ATCGACGAACGCAGCTACCTGGCCATGCAGGACGCCCTGGCGCGAGCCCGCGAGGAGGGGGGACGGGTGTTC 
GGCGGCGAGCGGCAATTGCAGGAGCGCTATCCGGATGCCTACTACGTGTCGCCGGCCATCGTCGAGATGCCG 
GGACAGACCGAAGTGGTGCGCACGGAGACCTTCGCCCCGATCCTGTACGTGGTCGGCTACCGCGATTTCGAC 
GAGGCCCTGCGCCTGAACAACGAGGTTCCCCAGGGACTGTCGTCGTGCATCTTCACCACCGACCTGCGCGAG 
GCGGAACTGTTCCAGGGCGCGGCGGGCAGTGACTGCGGGATCGCCAACGTCAACATCGGCACCAGCGGGGCG 
GAAATCGGCGGGGCGTTCGGCGGCGAGAAAGAGACCGGCGGCGGTCGCGAGTCCGGCTCGGACGCCTGGAAG 
GCCTACATGCGACGGCAGACCAACACCGTCAACTATTCCCGCGAGCTGCCGCTGGCACAGGGCATCACCTTC 
GATTGA