ViewGene
Locus Name:
GeneID:
Location:

GeneID:6759
TrivialName: PA14_63450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63450
PAO1 Ortholog Locus:
Sequence Length:336
Protein Length:111
Start: 5657975
Stop: 5658310
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK64957.1| (AE007222) hypothetical protein [Sinorhizobium meliloti]
Identities = 60/101 (59%), Positives = 70/101 (69%)
Sequence:
ATGAAGGCGAAGCCCGTCATACCACGCGTACTCGCCAATCAGGACGTTGAAGCGGCTGTCGATTACTACCTC
AGCGAAGATGCCGAACAGGCTGCTCTGGGGTTCATCGATGCCCTGGAAAAGGCATACGCCCATATTGCCCGT
CACCCTGCCAGCGGCTCATCCCGCTACGCCCATGAGCTGGATTTGCCGGGGCTGCATTGCTGGCCACTCAAG
CGCTATCCCTACCTGGTTTTCTACGTCGAGCGCGACGACCACATCGATGTGTGGCGCGTACTCCACGGCATG
AACGATATCCCGTCCTGGATGCAGGCTGGCGAGAGCGCACCGCACTGA
Translation:
MKAKPVIPRVLANQDVEAAVDYYLSEDAEQAALGFIDALEKAYAHIARHPASGSSRYAHELDLPGLHCWPLK
RYPYLVFYVERDDHIDVWRVLHGMNDIPSWMQAGESAPH*
AnnotationID:6760GeneID:6759
AnnotatorUID: danlee
Modification Date/Time: 2005-10-05 17:05:14
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3668
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|53756932|gb|AAU91223.1|  conserved hypothetical protein [Methylococcus 
capsulatus str. Bath]
     Length=111
     Score =  194 bits (494),  Expect = 5e-49
     Identities = 88/110 (80%), Positives = 98/110 (89%), Gaps = 0/110 (0%)

gi|25504819|pir||C95299  hypothetical protein SMa0572 [imported] - Sinorhizobium meliloti             
(strain 1021) magaplasmid pSymA
     Length=107
     Score =  127 bits (320),  Expect = 8e-29
     Identities = 60/101 (59%), Positives = 70/101 (69%), Gaps = 0/101 (0%)

gi|68343882|gb|AAY91488.1|  conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
     Length=71
     Score =  122 bits (305),  Expect = 4e-27
     Identities = 53/68 (77%), Positives = 56/68 (82%), Gaps = 0/68 (0%)






 
Structural Features:
COG3668, ParE, Plasmid stabilization system protein [General function prediction only].
             CD-Length = 98 residues,  95.9% aligned
             Score = 50.4 bits (120), Expect = 5e-08

pfam05016, Plasmid_stabil, Plasmid stabilisation system protein.
             CD-Length = 85 residues,  95.3% aligned
             Score = 40.7 bits (95), Expect = 5e-05






   
Genomic Context:






   
Comment:


















    ReferenceID:13250




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30602




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6759
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
201659
                           gb|AAK64957.1|
                           (AE007222) hypothetical protein [Sinorhizobium meliloti]
                           111
                           55.85
                           64.86
                           4
                           316.0
     

     






      

          
GC ORFID: 49761How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4921655Stop: 4921990

          
Length: 336


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAAGGCGAAGCCCGTCATACCACGCGTACTCGCCAATCAGGACGTTGAAGCGGCTGTCGATTACTACCTC 
AGCGAAGATGCCGAACAGGCTGCTCTGGGGTTCATCGATGCCCTGGAAAAGGCATACGCCCATATTGCCCGT 
CACCCTGCCAGCGGCTCATCCCGCTACGCCCATGAGCTGGATTTGCCGGGGCTGCATTGCTGGCCACTCAAG 
CGCTATCCCTACCTGGTTTTCTACGTCGAGCGCGACGACCACATCGATGTGTGGCGCGTACTCCACGGCATG 
AACGATATCCCGTCCTGGATGCAGGCTGGCGAGAGCGCACCGCACTGA