ViewGene
Locus Name:
GeneID:
Location:

GeneID:6758
TrivialName: PA14_63440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63440
PAO1 Ortholog Locus:
Sequence Length:381
Protein Length:126
Start: 5657320
Stop: 5657700
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04117.1|AE004508_2 (AE004508) probable bacteriophage integrase [Pseudomonas aeruginosa PAO1]
Identities = 62/109 (56%), Positives = 77/109 (70%)
Sequence:
GTGCAATTCGTCAACACGAAGTCAAAGCATCGTCGCTCGGTCCCGATACCTCCAGAACTGGAACAACGCCTG
CACTCGCACCTGCGCCGCTACGGCAAGTTCTCCAACTGCCGCGACAGCTTCGACTTCGCCGTGAAAATGTCC
GGTGTCGCCCTCCCTCGTGGGCAGAAATCGCATGTGCTCCGCCACACGTTCGCCTCGCACTTCATGATGAAC
GGCGGCAACATCCTGACCCGGCAAAAGATTCTCGGGCACTCGTCGCTGACCTTGACCATGCGGTATGCGCAC
CTCGCCCCGGACTTCCTGCAAGAGGTGATCAGACTCGGCCCGCTGAAAGACTTTCGTCACCTGCTCGATACC
GGGAAGGATCACGAGTGCTAG
Translation:
MQFVNTKSKHRRSVPIPPELEQRLHSHLRRYGKFSNCRDSFDFAVKMSGVALPRGQKSHVLRHTFASHFMMN
GGNILTRQKILGHSSLTLTMRYAHLAPDFLQEVIRLGPLKDFRHLLDTGKDHEC*
AnnotationID:6759GeneID:6758
AnnotatorUID: danlee
Modification Date/Time: 2005-10-05 17:05:34
Gene Name:
Confidence Code:3
GeneProduct:possible bacteriophage integrase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|37596415|gb|AAQ94690.1|  PA0728 [Pseudomonas phage Pf1]
     Length=338
     Score =  143 bits (360),  Expect = 2e-33
     Identities = 68/112 (60%), Positives = 85/112 (75%), Gaps = 0/112 (0%)






 
Structural Features:
cd00797, HP1_INT_C, Phage HP1 integrase, C-terminal catalytic domain. 
             CD-Length = 158 residues, only  69.0% aligned
             Score =  125 bits (316), Expect = 1e-30






   
Genomic Context:






   
Comment:


















    ReferenceID:16513




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30600




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6758
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
201657
                           emb|CAE17164.1|
                           (BX571875) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           154
                           40.90
                           52.59
                           38
                           275.0
     

     
     
201658
                           emb|CAE17162.1|
                           (BX571874) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           153
                           35.29
                           49.67
                           40
                           255.0
     

     
     
8029
                           PA0728_tr
                           translation of PA0728
                           340
                           18.52
                           22.94
                           227
                           320.0
     

     
     
201647
                           gb|AAG04117.1|AE004508_2
                           (AE004508) probable bacteriophage integrase [Pseudomonas aeruginosa PAO1]
                           340
                           18.52
                           22.94
                           227
                           320.0
     

     
     
201649
                           dbj|BAB36040.1|
                           (AP002559) putative integrase [Escherichia coli O157:H7]
                           346
                           17.91
                           22.25
                           233
                           304.0
     

     






      

          
GC ORFID: 49760How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4921000Stop: 4921380

          
Length: 381


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0728 translation of PA0728Homolog Bit Score 129.0

          
Other Homologs:  t_PA0728 translation of PA0728 (BLASTP 129)

          
GC ORF Sequence

           
GTGCAATTCGTCAACACGAAGTCAAAGCATCGTCGCTCGGTCCCGATACCTCCAGAACTGGAACAACGCCTG 
CACTCGCACCTGCGCCGCTACGGCAAGTTCTCCAACTGCCGCGACAGCTTCGACTTCGCCGTGAAAATGTCC 
GGTGTCGCCCTCCCTCGTGGGCAGAAATCGCATGTGCTCCGCCACACGTTCGCCTCGCACTTCATGATGAAC 
GGCGGCAACATCCTGACCCGGCAAAAGATTCTCGGGCACTCGTCGCTGACCTTGACCATGCGGTATGCGCAC 
CTCGCCCCGGACTTCCTGCAAGAGGTGATCAGACTCGGCCCGCTGAAAGACTTTCGTCACCTGCTCGATACC 
GGGAAGGATCACGAGTGCTAG