ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6737

TrivialName: PA14_62040

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_62040

PAO1 Ortholog Locus:

Sequence Length: 708

Protein Length: 235

Start: 5535889

Stop: 5535182

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK01492.1| (AF241171) paraquat-inducible protein A [Pseudomonas aeruginosa] Identities = 64/205 (31%), Positives = 114/205 (55%), Gaps = 13/205 (6%)

Sequence:

TTGCACTGTGCGCTCGTCTACAATAGCCGACAAATCCAGCCGAGCTCATTCATGTCCGATACCGATGTCCGT
GGCCTGCAGGATCTTCCCCTGGAAGAACTGGTTGCTTGCCATGAGTGTGATCTGTTGATGCGCCGGGAACCC
CTGGGACCGGGCGAGAAAGCCAATTGTCCGCGCTGCGGTTTCGAGTTGGCCGCGCATCGCCATCAATGGAAA
CGCCGTTGCTTCGCGCTGGTTCTGACGGCGCTCTTCCTCTATATCCCAGCCAATTTCCTGCCGATCATGAAT
CTCAGCCTGCTCGGCCAGACCCGCAGCGATACGGTCTGGACGGGAGTGCTCGGTCTTTACGACAGTGGCATG
CAGGGCGTCGCCATCCTGGTATTCCTGTGCAGCATGGTGATCCCGTTGGTCAAGTTGCTCTGCCAGTTGCTG
GTGATGATCAGCGTGCGTTTCGGTATCGCCCGTCACATCGGCATGCTGCTCTATCGCGGCTATCACCATCTG
CGCGAGTGGGGGATGCTCGAGGTCTACCTCATGGGCATCCTGGTTTCCATCGTCAAGCTGATCGACATGGCC
GACCTCAGCCTGGGCGTCGGCCTGGCCTGTTTCGTGGCGCTGCTGTTCACCCAGGTCTGGCTGGAGGTCACC
ATGTCGCCGCACCAGGTATGGGAAGCGCTGGGCGGCGAGGACGACGATGCGCGCGCTTGA

Translation:

MHCALVYNSRQIQPSSFMSDTDVRGLQDLPLEELVACHECDLLMRREPLGPGEKANCPRCGFELAAHRHQWK
RRCFALVLTALFLYIPANFLPIMNLSLLGQTRSDTVWTGVLGLYDSGMQGVAILVFLCSMVIPLVKLLCQLL
VMISVRFGIARHIGMLLYRGYHHLREWGMLEVYLMGILVSIVKLIDMADLSLGVGLACFVALLFTQVWLEVT
MSPHQVWEALGGEDDDARA*

AnnotationID:6738 GeneID:6737

AnnotatorUID: danlee

Modification Date/Time: 2006-03-21 13:01:21

Gene Name:

Confidence Code: 4

GeneProduct: putative paraquat-inducible protein

Cell Localization: (4) Inner membrane protein

Synonyms:

Cell Localization Confidence Code: 3

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: pfam04403

Secondary Functional Category(ies): protein secretion/export apparatus

EC Number:

Status: ACTIVE

Pathway:

Homology:

Homology to N-terminal half of
PA4690 [gene=PA4690] [prot=still frameshift hypothetical protein]
          Length = 421

 Score =  444 bits (1142), Expect = e-126
 Identities = 216/217 (99%), Positives = 217/217 (99%)

Structural Features:

pfam04403, PqiA, Paraquat-inducible protein A. 
CD-Length = 207 residues,  96.6% aligned
Score =  155 bits (393), Expect = 5e-39
Identities = 72/200 (36%), Positives = 113/200 (56%), Gaps = 2/200 (1%)

Genomic Context:

Comment:

Similarity to neighboring GID5194 (PA14_62030):
Identities = 67/205 (32%), Positives = 111/205 (54%), Gaps = 13/205 (6%).

Similar to paraquat-inducible protein A, PAGI-1(2), GID5184 (PA14_36030):
Identities = 64/205 (31%), Positives = 114/205

ReferenceID:16493

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30560

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37602

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6737_cdd.html

URL:

ReferenceID:38140

Author/Investigator(s): Koh YS, Roe JH.

Title: Isolation of a novel paraquat-inducible (pqi) gene regulated by the soxRS locus in Escherichia coli.

PubMed: 7751275

MedLine:

Source:

J Bacteriol. 1995 May;177(10):2673-8.

Reference Type: Journal

Data:

URL:	`http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7751275`

GC ORFID: `49739`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `4799569`	Stop: `4798862`
Length: `708`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4690 translation of PA4690`	Homolog Bit Score `446.0`
Other Homologs: `t_PA4690 translation of PA4690 (BLASTP 446)`
GC ORF Sequence
TTGCACTGTGCGCTCGTCTACAATAGCCGACAAATCCAGCCGAGCTCATTCATGTCCGATACCGATGTCCGT GGCCTGCAGGATCTTCCCCTGGAAGAACTGGTTGCTTGCCATGAGTGTGATCTGTTGATGCGCCGGGAACCC CTGGGACCGGGCGAGAAAGCCAATTGTCCGCGCTGCGGTTTCGAGTTGGCCGCGCATCGCCATCAATGGAAA CGCCGTTGCTTCGCGCTGGTTCTGACGGCGCTCTTCCTCTATATCCCAGCCAATTTCCTGCCGATCATGAAT CTCAGCCTGCTCGGCCAGACCCGCAGCGATACGGTCTGGACGGGAGTGCTCGGTCTTTACGACAGTGGCATG CAGGGCGTCGCCATCCTGGTATTCCTGTGCAGCATGGTGATCCCGTTGGTCAAGTTGCTCTGCCAGTTGCTG GTGATGATCAGCGTGCGTTTCGGTATCGCCCGTCACATCGGCATGCTGCTCTATCGCGGCTATCACCATCTG CGCGAGTGGGGGATGCTCGAGGTCTACCTCATGGGCATCCTGGTTTCCATCGTCAAGCTGATCGACATGGCC GACCTCAGCCTGGGCGTCGGCCTGGCCTGTTTCGTGGCGCTGCTGTTCACCCAGGTCTGGCTGGAGGTCACC ATGTCGCCGCACCAGGTATGGGAAGCGCTGGGCGGCGAGGACGACGATGCGCGCGCTTGA