ViewGene
Locus Name:
GeneID:
Location:

GeneID:673
TrivialName: PA14_70200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70200
PAO1 Ortholog Locus:PA5317
Sequence Length:1581
Protein Length:526
Start: 6259725
Stop: 6261305
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08702.1|AE004944_6 (AE004944) probable binding protein component of ABC dipeptide transporter [Pseudomonas aeruginosa PAO1]
Identities = 521/526 (99%), Positives = 521/526 (99%)
Sequence:
ATGCGCCTCGCCGCTTTCTCCCTGTTCCTCGCCCCCCTGCTGCTCGCCCAGCCCGCCGCCGCTGCCACCTTG
AGTGTGTGTACCGAGGCCAGCCCCGAGGGCTTCGACGTGGTCCAGTACAACTCGCTGACCACCACCAACGCC
TCGGCCGATGTGCTGATGAATCGCCTGGTCGAGTTCGACGCCGGCAAGGGGACGGTGGTGCCCTCGCTGGCC
GAGCGCTGGTCGGTGTCCGACGACGGCCTGAGCTATCGCTTCGACCTGCGCCAGGGCGTGCACTTCCACAGC
ACCGCCTACTTCAAGCCGAGCCGTACGCTCGACGCCGACGACGTGGTGTTCAGCTTCCAGCGCATGCTCGAT
CCGGCCAATCCCTGGCACAAGGTGGCGCAGAACGGCTTCCCGCACGCCCAGTCGATGCAACTACCGGAGCTG
ATCAAGCGGGTGGAGAAAAGCGGCGACCACCAGGTGCTGATCGTTCTCGACCACCCCGACGCGACCTTCCTG
CCGATGCTGAGCATGGGCTTCGCCTCCATCTATTCGGCGGAGTACGCCGACCAGTTGATGAAGGCCGGAACC
CCGGAAAAGCTCAACACCGCGCCGATCGGCAGCGGGCCGTTCGTGTTCAAGCGCTTCCAGAAGGACGCGGTG
GTGCGCTACGCCGCCAACCCCGAGTACTTCGCCGGCAAGCCGGCGGTCGACGCGCTGATCTTCGCCATTACC
CCGGACGCCAACGTGCGCCTGCAGAAGTTGCGCCGCGGCGAATGCCAGATCGCCCTGTCGCCGAAGCCGCTG
GACGTGGAGAGCGCGCGCAAGGACGCCAGCCTGAAGGTCGAGCAGACGCCGGCCTTCATGACCGCCTTCGTC
GCCCTCAATACCCAGCATCCGCCGCTGGACGATCCCAAGGTGCGCCAGGCGATCAACCTGGCCTTCGACCGC
ACCAGCTACCTGCAGGCGGTATTCGAAGGCAGCGCCAGTGCCGCCACCGGCATCTATCCGCCAAACACCTGG
AGCTATGCCAGGGATATTCCCGCCTACCCGCACGACCCCGAACAGGCGCGCAAGCTGCTGGCTGGCAAGCAG
CTTCCCGAGCTGAACATCTGGACCCGCCCGTCCGGCAGCCTGCTCAACCCCAACCCGAGCCTCGGCGCCCAA
CTGCTCCAGGCCGACCTGGCGGAGGCCGGGATCAAGGCCAACATCCGCGTCATCGAATGGGGCGAGTTGATC
CGTCGCGCCAAGAACGGCGAACACGACCTGCTGTTCATGGGTTGGGCCGGCGACAACGGCGATCCGGACAAC
TTCCTCACTCCGCAATTCAGCTGCGCCAGCGTCAAGTCGGGGCTCAACTTCGCGCGCTATTGCGACCCCGGC
CTGGACAAGCTGATTGCCGACGGCAAGGCCGCCAGCAGCCAGGAACAACGCACCGGCCTGTACCACCAGGCG
CAGAAACTGATCCACGAACAGGCGCTCTGGCTGCCCCTGGCCCACCCGACCGCCTTCGCCCTGACCCGCCAG
GAGGTGCAGGGCTACCAGGTCAATCCGTTCGGTCGCCAGGATTTCTCGCGGGTCGCCGTGAAACGCTGA
Translation:
MRLAAFSLFLAPLLLAQPAAAATLSVCTEASPEGFDVVQYNSLTTTNASADVLMNRLVEFDAGKGTVVPSLA
ERWSVSDDGLSYRFDLRQGVHFHSTAYFKPSRTLDADDVVFSFQRMLDPANPWHKVAQNGFPHAQSMQLPEL
IKRVEKSGDHQVLIVLDHPDATFLPMLSMGFASIYSAEYADQLMKAGTPEKLNTAPIGSGPFVFKRFQKDAV
VRYAANPEYFAGKPAVDALIFAITPDANVRLQKLRRGECQIALSPKPLDVESARKDASLKVEQTPAFMTAFV
ALNTQHPPLDDPKVRQAINLAFDRTSYLQAVFEGSASAATGIYPPNTWSYARDIPAYPHDPEQARKLLAGKQ
LPELNIWTRPSGSLLNPNPSLGAQLLQADLAEAGIKANIRVIEWGELIRRAKNGEHDLLFMGWAGDNGDPDN
FLTPQFSCASVKSGLNFARYCDPGLDKLIADGKAASSQEQRTGLYHQAQKLIHEQALWLPLAHPTAFALTRQ
EVQGYQVNPFGRQDFSRVAVKR*
AnnotationID:682GeneID:673
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 14:02:13
Gene Name:
Confidence Code:3
GeneProduct:putative binding protein component of ABC dipeptide transporter
Cell Localization:()
Synonyms:PA5317
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00496,COG0747,COG4166
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53641.1| (AE016856) bacterial extracellular solute-binding protein, family 5
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 528

 Score =  777 bits (2006), Expect = 0.0
 Identities = 382/528 (72%), Positives = 438/528 (82%), Gaps = 3/528 (0%)

>gb|AAN70848.1|AE016729_6 (AE016793) periplasmic dipeptide-binding protein, putative
           [Pseudomonas putida KT2440]
          Length = 529

 Score =  767 bits (1981), Expect = 0.0
 Identities = 384/529 (72%), Positives = 434/529 (82%), Gaps = 3/529 (0%)

>gb|AAN82797.1|AE016768_215 (AE016768) Periplasmic dipeptide transport protein precursor
           [Escherichia coli CFT073]
          Length = 535

 Score =  469 bits (1206), Expect = e-131
 Identities = 232/521 (44%), Positives = 331/521 (63%), Gaps = 3/521 (0%)






 
Structural Features:
pfam00496, SBP_bac_5, Bacterial extracellular solute-binding proteins, family 5.
CD-Length = 508 residues,  96.9% aligned
Score =  407 bits (1048), Expect = 1e-114
Identities = 176/507 (34%), Positives = 274/507 (54%), Gaps = 22/507 (4%)

COG0747, DdpA, ABC-type dipeptide transport system, periplasmic component 
[Amino acid transport and metabolism]
CD-Length = 556 residues,  96.9% aligned
Score =  319 bits (817), Expect = 6e-88
Identities = 176/561 (31%), Positives = 256/561 (45%), Gaps = 58/561 (10%)

COG4166, OppA, ABC-type oligopeptide transport system, periplasmic component 
[Amino acid transport and metabolism]
CD-Length = 562 residues,  98.2% aligned
Score =  214 bits (546), Expect = 2e-56
Identities = 155/566 (27%), Positives = 230/566 (40%), Gaps = 56/566 (9%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1349




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18491




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34766




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:673_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:673
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1133
                           PA5317_tr
                           translation of PA5317
                           526
                           99.04
                           99.04
                           0
                           2708.0
     

     
     
42246
                           gb|AAG08702.1|AE004944_6
                           (AE004944) probable binding protein component of ABC dipeptide transporter [Pseudomonas aeruginosa PAO1]
                           526
                           99.04
                           99.04
                           0
                           2708.0
     

     
     
42248
                           gb|AAN70848.1|AE016729_6
                           (AE016793) periplasmic dipeptide-binding protein, putative [Pseudomonas putida KT2440]
                           529
                           72.58
                           82.04
                           3
                           1984.0
     

     
     
42247
                           gb|AAO53641.1|
                           (AE016856) bacterial extracellular solute-binding protein, family 5 [Pseudomonas syringae pv. tomato str. DC3000]
                           529
                           72.21
                           82.79
                           4
                           2009.0
     

     
     
42249
                           gb|AAQ61089.1|
                           (AE016922) probable binding protein component of ABC dipeptide transporter [Chromobacterium violaceum ATCC 12472]
                           532
                           63.15
                           76.12
                           12
                           1750.0
     

     






      

          
GC ORFID: 43675How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5317Glimmer Score: 

          
Start: 5523414Stop: 5524994

          
Length: 1581


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5317 translation of PA5317Homolog Bit Score 1047.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3930 (ORF: BLASTX 780.0), t_PA4502 (ORF: BLASTX 566.0), t_PA4497 (ORF: BLASTX 544.0), psyr_15may02_Scaffold4_revised_gene5615 (ORF: BLASTX 528.0), t_PA4496 (ORF: BLASTX 464.0), psyr_15may02_Scaffold4_revised_gene5610 (ORF: BLASTX 462.0), t_PA4500 (ORF: BLASTX 454.0), psyr_15may02_Scaffold4_revised_gene5612 (ORF: BLASTX 447.0), psyr_15may02_Scaffold4_revised_gene5611 (ORF: BLASTX 444.0), t_PA5317 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCTCGCCGCTTTCTCCCTGTTCCTCGCCCCCCTGCTGCTCGCCCAGCCCGCCGCCGCTGCCACCTTG 
AGTGTGTGTACCGAGGCCAGCCCCGAGGGCTTCGACGTGGTCCAGTACAACTCGCTGACCACCACCAACGCC 
TCGGCCGATGTGCTGATGAATCGCCTGGTCGAGTTCGACGCCGGCAAGGGGACGGTGGTGCCCTCGCTGGCC 
GAGCGCTGGTCGGTGTCCGACGACGGCCTGAGCTATCGCTTCGACCTGCGCCAGGGCGTGCACTTCCACAGC 
ACCGCCTACTTCAAGCCGAGCCGTACGCTCGACGCCGACGACGTGGTGTTCAGCTTCCAGCGCATGCTCGAT 
CCGGCCAATCCCTGGCACAAGGTGGCGCAGAACGGCTTCCCGCACGCCCAGTCGATGCAACTACCGGAGCTG 
ATCAAGCGGGTGGAGAAAAGCGGCGACCACCAGGTGCTGATCGTTCTCGACCACCCCGACGCGACCTTCCTG 
CCGATGCTGAGCATGGGCTTCGCCTCCATCTATTCGGCGGAGTACGCCGACCAGTTGATGAAGGCCGGAACC 
CCGGAAAAGCTCAACACCGCGCCGATCGGCAGCGGGCCGTTCGTGTTCAAGCGCTTCCAGAAGGACGCGGTG 
GTGCGCTACGCCGCCAACCCCGAGTACTTCGCCGGCAAGCCGGCGGTCGACGCGCTGATCTTCGCCATTACC 
CCGGACGCCAACGTGCGCCTGCAGAAGTTGCGCCGCGGCGAATGCCAGATCGCCCTGTCGCCGAAGCCGCTG 
GACGTGGAGAGCGCGCGCAAGGACGCCAGCCTGAAGGTCGAGCAGACGCCGGCCTTCATGACCGCCTTCGTC 
GCCCTCAATACCCAGCATCCGCCGCTGGACGATCCCAAGGTGCGCCAGGCGATCAACCTGGCCTTCGACCGC 
ACCAGCTACCTGCAGGCGGTATTCGAAGGCAGCGCCAGTGCCGCCACCGGCATCTATCCGCCAAACACCTGG 
AGCTATGCCAGGGATATTCCCGCCTACCCGCACGACCCCGAACAGGCGCGCAAGCTGCTGGCTGGCAAGCAG 
CTTCCCGAGCTGAACATCTGGACCCGCCCGTCCGGCAGCCTGCTCAACCCCAACCCGAGCCTCGGCGCCCAA 
CTGCTCCAGGCCGACCTGGCGGAGGCCGGGATCAAGGCCAACATCCGCGTCATCGAATGGGGCGAGTTGATC 
CGTCGCGCCAAGAACGGCGAACACGACCTGCTGTTCATGGGTTGGGCCGGCGACAACGGCGATCCGGACAAC 
TTCCTCACTCCGCAATTCAGCTGCGCCAGCGTCAAGTCGGGGCTCAACTTCGCGCGCTATTGCGACCCCGGC 
CTGGACAAGCTGATTGCCGACGGCAAGGCCGCCAGCAGCCAGGAACAACGCACCGGCCTGTACCACCAGGCG 
CAGAAACTGATCCACGAACAGGCGCTCTGGCTGCCCCTGGCCCACCCGACCGCCTTCGCCCTGACCCGCCAG 
GAGGTGCAGGGCTACCAGGTCAATCCGTTCGGTCGCCAGGATTTCTCGCGGGTCGCCGTGAAACGCTGA