ViewGene
Locus Name:
GeneID:
Location:

GeneID:6725
TrivialName: PA14_61340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61340
PAO1 Ortholog Locus:
Sequence Length:264
Protein Length:87
Start: 5476627
Stop: 5476364
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO54671.1| (AE016859) hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 52/87 (59%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
Sequence:
ATGCAGCGCGTATATGAGCCGGCCGACCTGCTGGAGGCCGAGATGCTGGTGGGAATGCTCGCCAGCGAAGGG
ATCGCCGCCCATGTCAGCGGCCGCCACCTGGTCGGCGCCATCGGCGAACTGCCGCCTGGCGGACTGCTGGCG
TTGTTGGTGGCGGACGAGCAGACGGAGCGGGCGCGGGAACTGATCCTCGCCTACAACGCCGCCGCCCCGCTG
GCCGAGGAGCCGCCGGAGCCCTGCGGCCCCGGCAGCCTGTTGTGTTGA
Translation:
MQRVYEPADLLEAEMLVGMLASEGIAAHVSGRHLVGAIGELPPGGLLALLVADEQTERARELILAYNAAAPL
AEEPPEPCGPGSLLC*
AnnotationID:6726GeneID:6725
AnnotatorUID: danlee
Modification Date/Time: 2006-06-02 00:12:33
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84323330|ref|ZP_00971403.1|  hypothetical protein Paer2_01005410 [Pseudomonas aeruginosa 2192]
 gi|84317296|ref|ZP_00965747.1|  hypothetical protein PaerC_01004970 [Pseudomonas aeruginosa C3719]
Length=87

 Score =  110 bits (276),  Expect = 1e-23
 Identities = 87/87 (100%), Positives = 87/87 (100%), Gaps = 0/87 (0%)

gi|94415650|ref|ZP_01295487.1|  hypothetical protein PaerP_01002617 [Pseudomonas aeruginosa PA7]
Length=87

 Score =  109 bits (273),  Expect = 3e-23
 Identities = 86/87 (98%), Positives = 87/87 (100%), Gaps = 0/87 (0%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:13197




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30536




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49727How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4740307Stop: 4740044

          
Length: 264


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCAGCGCGTATATGAGCCGGCCGACCTGCTGGAGGCCGAGATGCTGGTGGGAATGCTCGCCAGCGAAGGG 
ATCGCCGCCCATGTCAGCGGCCGCCACCTGGTCGGCGCCATCGGCGAACTGCCGCCTGGCGGACTGCTGGCG 
TTGTTGGTGGCGGACGAGCAGACGGAGCGGGCGCGGGAACTGATCCTCGCCTACAACGCCGCCGCCCCGCTG 
GCCGAGGAGCCGCCGGAGCCCTGCGGCCCCGGCAGCCTGTTGTGTTGA