ViewGene
Locus Name:
GeneID:
Location:

GeneID:6701
TrivialName: PA14_60240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60240
PAO1 Ortholog Locus:
Sequence Length:285
Protein Length:94
Start: 5365571
Stop: 5365855
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAB56535.1| (AJ249642) hypothetical protein [Pseudomonas stutzeri]
Identities = 46/75 (61%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Sequence:
TTGGCTAAACTGCAGCTTTCTCCAGCCTCCGAGATCACCATGGGCCTTTTCCGCCTCCTGTTCTGGATCGCC
CTGATCGCCATCGCGTTCTGGCTCTGGCGTCGCTTTACCCGTCCCACTCCGCGCCAGCAGCAACGTCCGCAG
GACGAGCCGAGCGCATCGCCGATGGTCCGCTGCGCCCATTGCGGCGTCCACGTGCCGCAGGCCAACGCCCTC
GCCCACGAACAACGCTGGTATTGCAGCCAGGCGCACCTGCGCCAGGACCAGGGCGACCGTGCGCGCTGA
Translation:
MAKLQLSPASEITMGLFRLLFWIALIAIAFWLWRRFTRPTPRQQQRPQDEPSASPMVRCAHCGVHVPQANAL
AHEQRWYCSQAHLRQDQGDRAR*
AnnotationID:6702GeneID:6701
AnnotatorUID: danlee
Modification Date/Time: 2006-05-03 14:02:43
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:4
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:
ORF present but not annotated in PAO1.


















    ReferenceID:16461




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30490




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49703How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4629250Stop: 4629534

          
Length: 285


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
TTGGCTAAACTGCAGCTTTCTCCAGCCTCCGAGATCACCATGGGCCTTTTCCGCCTCCTGTTCTGGATCGCC 
CTGATCGCCATCGCGTTCTGGCTCTGGCGTCGCTTTACCCGTCCCACTCCGCGCCAGCAGCAACGTCCGCAG 
GACGAGCCGAGCGCATCGCCGATGGTCCGCTGCGCCCATTGCGGCGTCCACGTGCCGCAGGCCAACGCCCTC 
GCCCACGAACAACGCTGGTATTGCAGCCAGGCGCACCTGCGCCAGGACCAGGGCGACCGTGCGCGCTGA