ViewGene
Locus Name:
GeneID:
Location:

GeneID:670
TrivialName: PA14_31400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31400
PAO1 Ortholog Locus:PA2561
Sequence Length:1728
Protein Length:575
Start: 2732504
Stop: 2730777
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05949.1|AE004684_4 (AE004684) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 557/567 (98%), Positives = 562/567 (99%)
Sequence:
CTGCGAGCCGGAACACGCGCCACGCCCGCCTCGCCGGGCCACAGGGACGTCCTCGGCTGCCTCGTCGCAGCC
TGCGTGCCGGTCCAACCTGGCAATCCATCGAGGCGTTCCATGCTGCAACAATCCCTACGTGCGCAAATCCTT
GTCCTGCTCGGCGGCAGCCTGGCGGCGCTGCTACTCATAGCCCTGGCCTGCTTCGGCTCGCTGACCGGCGAC
GTACGCGCCTACCGCGAGCTGCTCGGCGGCCCCGTGCGGGCGGCGCAACTGATCGACGAGGCCAACCTGCAA
TTCCGCGGCCAGGTCCAGGAATGGAAGAACGTCCTGCTGCGCGGACGCCAGGCAGAGGCCCAGACGAAATAC
TGGAGCCAGTTCGAAGCCCAGGAACGAGCGGTGCAGGACATCCTCGGGCGCCTGGGCAGCGTGGCCGAAGGC
GAGTTGAAGGATCGTGTCGAGCGCCTGCGCGAAGAGCACCGGCGACTCGGTACGGCTTACCGACAAGGCAGG
CAACGGTTCCTCGAGGCGGGCGCCGACCCCATCGCCGGCGACCTGGCGGTGACCGGCATCGACCGCGCCACC
ACCGCGCAGATGCAGGCCTTGCGTGACGAACTGCACCAGGCCAGTGATCTCCGTTCCGCCGCCATCAGCGCG
GAGGCCCGGCGCACCATGCTGCTCGGCAGCCTGGTGCTGATCGGCGCCAGCCTGGCCGTCGCCCTGCTCAGC
CTGTGGCTGGTCAATCGCAACCTGGTCCGTCCGGTGCAACGCCTGATCGAGCACATCGCCCAGCTCAGCCAT
GGCGACTTCGGCGAGCGCATCGAGATCCGGCGCAAGGACGAACTCGGCAAGCTGGCCCTGGCCGCCAACACG
CTGCGCGACTTCCTGGTGGACATCTTCGAGCGGCTGCGGCGCAGTACCCGCGACCTGGACAGCGCCAGCGGC
TCACTGAACGCGATCGCCAGCCTGATGGCGGCCGGTACCCGCGAGCAGTTCAGCCGCACCGACCAGGTCGCC
ACGGCGATGCAGGAAATGTCCGCCACCGCCCAGGAAGTGGCGCGCTACGCCGGCGACGCGGCCAAGGCCGCC
GACGAGGCGGACGATTCCGCCCAGCGCGGCGAAGACGTGATGGAAGAAACGATTCGCAGCATCGGCGAGATG
CGCAAGGAGATCGACCATACGGTGGAGGTCATCCGCCAATTGGAAAGCGATAGCGGCAGGATCGGCAAGGTC
CTCGACGTGATCCGCGGCATTGCCGAGCAGACCAACCTGCTCGCCCTCAACGCGGCCATCGAAGCCGCCCGC
GCCGGCGATGCCGGCCGTGGCTTCGCGGTGGTCGCCGACGAGGTCCGCACCCTGGCGCAGCGCACCGCCGAG
TCCATCGCCGAGATCCACCAGATCATCGATACCGTGCAGAACGGCGCGGTGAATGCCGCGCGCGCCATCGAA
AGCGGGCAGTCGCGCAGCGAGGCCGGTGCCGAGCAGGTTGCCAACGCCGGCGCCATGCTGCGCCAGATCACC
GCCTCGGTCGAATCGATCCGCGACATGAACCGCCAGATCGCTACCGCCGCCGAGGAACAGACCGCCGTGGCC
GAGGACATTTCCCGCAACCTCACGGAAATCGCCTCGATCGCCTCCAGCAACCAGGAACAGGTGGAGCAGACC
GAAGCCGCCAGCCGTGATCTCCACAACCTCTCCGCGCAACTGGGCGATGCCCTGCAACGCCTGCGGGCCTGA
Translation:
MRAGTRATPASPGHRDVLGCLVAACVPVQPGNPSRRSMLQQSLRAQILVLLGGSLAALLLIALACFGSLTGD
VRAYRELLGGPVRAAQLIDEANLQFRGQVQEWKNVLLRGRQAEAQTKYWSQFEAQERAVQDILGRLGSVAEG
ELKDRVERLREEHRRLGTAYRQGRQRFLEAGADPIAGDLAVTGIDRATTAQMQALRDELHQASDLRSAAISA
EARRTMLLGSLVLIGASLAVALLSLWLVNRNLVRPVQRLIEHIAQLSHGDFGERIEIRRKDELGKLALAANT
LRDFLVDIFERLRRSTRDLDSASGSLNAIASLMAAGTREQFSRTDQVATAMQEMSATAQEVARYAGDAAKAA
DEADDSAQRGEDVMEETIRSIGEMRKEIDHTVEVIRQLESDSGRIGKVLDVIRGIAEQTNLLALNAAIEAAR
AGDAGRGFAVVADEVRTLAQRTAESIAEIHQIIDTVQNGAVNAARAIESGQSRSEAGAEQVANAGAMLRQIT
ASVESIRDMNRQIATAAEEQTAVAEDISRNLTEIASIASSNQEQVEQTEAASRDLHNLSAQLGDALQRLRA*
AnnotationID:679GeneID:670
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 06:06:36
Gene Name:
Confidence Code:3
GeneProduct:putative methyl-accepting chemotaxis transducer
Cell Localization:()
Synonyms:ctpH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0840,smart00283,pfam00015
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67733.1|AE016404_8 (AE016782) methyl-accepting chemotaxis transducer [Pseudomonas
           putida KT2440]
          Length = 555

 Score =  657 bits (1694), Expect = 0.0
 Identities = 348/541 (64%), Positives = 427/541 (78%)

>gb|AAO56033.1| (AE016864) methyl-accepting chemotaxis protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 559

 Score =  655 bits (1690), Expect = 0.0
 Identities = 352/557 (63%), Positives = 431/557 (77%), Gaps = 2/557 (0%)








 
Structural Features:
COG0840, Tar, Methyl-accepting chemotaxis protein 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 408 residues,  94.1% aligned
Score =  197 bits (501), Expect = 3e-51
Identities = 136/387 (35%), Positives = 220/387 (56%), Gaps = 5/387 (1%)

smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
CD-Length = 262 residues,  96.9% aligned
Score =  188 bits (478), Expect = 2e-48
Identities = 105/254 (41%), Positives = 159/254 (62%)

pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP) signaling domain.
CD-Length = 251 residues,  98.8% aligned
Score =  172 bits (438), Expect = 8e-44
Identities = 95/248 (38%), Positives = 155/248 (62%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14191




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18485




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33136




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:670_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:670
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1125
                           PA2561_tr
                           translation of PA2561
                           575
                           96.86
                           97.73
                           7
                           2710.0
     

     
     
42127
                           dbj|BAA96488.1|
                           (AB039332) chemotactic transducer CtpH [Pseudomonas aeruginosa]
                           575
                           96.86
                           97.73
                           7
                           2710.0
     

     
     
42126
                           gb|AAG05949.1|AE004684_4
                           (AE004684) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           575
                           96.86
                           97.73
                           7
                           2710.0
     

     
     
42129
                           gb|AAO56033.1|
                           (AE016864) methyl-accepting chemotaxis protein [Pseudomonas syringae pv. tomato str. DC3000]
                           577
                           61.00
                           74.69
                           20
                           1686.0
     

     
     
42128
                           gb|AAN67733.1|AE016404_8
                           (AE016782) methyl-accepting chemotaxis transducer [Pseudomonas putida KT2440]
                           577
                           61.00
                           74.87
                           24
                           1689.0
     

     






      

          
GC ORFID: 43672How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2561Glimmer Score: 

          
Start: 2221422Stop: 2223149

          
Length: 1728


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2561 translation of PA2561Homolog Bit Score 1048.0

          
Other Homologs:  t_PA2652 (ORF: BLASTX 219.0), t_PA1561 (ORF: BLASTX 219.0), t_PA2561 (ORF: GLIMMER)

          
GC ORF Sequence

           
CTGCGAGCCGGAACACGCGCCACGCCCGCCTCGCCGGGCCACAGGGACGTCCTCGGCTGCCTCGTCGCAGCC 
TGCGTGCCGGTCCAACCTGGCAATCCATCGAGGCGTTCCATGCTGCAACAATCCCTACGTGCGCAAATCCTT 
GTCCTGCTCGGCGGCAGCCTGGCGGCGCTGCTACTCATAGCCCTGGCCTGCTTCGGCTCGCTGACCGGCGAC 
GTACGCGCCTACCGCGAGCTGCTCGGCGGCCCCGTGCGGGCGGCGCAACTGATCGACGAGGCCAACCTGCAA 
TTCCGCGGCCAGGTCCAGGAATGGAAGAACGTCCTGCTGCGCGGACGCCAGGCAGAGGCCCAGACGAAATAC 
TGGAGCCAGTTCGAAGCCCAGGAACGAGCGGTGCAGGACATCCTCGGGCGCCTGGGCAGCGTGGCCGAAGGC 
GAGTTGAAGGATCGTGTCGAGCGCCTGCGCGAAGAGCACCGGCGACTCGGTACGGCTTACCGACAAGGCAGG 
CAACGGTTCCTCGAGGCGGGCGCCGACCCCATCGCCGGCGACCTGGCGGTGACCGGCATCGACCGCGCCACC 
ACCGCGCAGATGCAGGCCTTGCGTGACGAACTGCACCAGGCCAGTGATCTCCGTTCCGCCGCCATCAGCGCG 
GAGGCCCGGCGCACCATGCTGCTCGGCAGCCTGGTGCTGATCGGCGCCAGCCTGGCCGTCGCCCTGCTCAGC 
CTGTGGCTGGTCAATCGCAACCTGGTCCGTCCGGTGCAACGCCTGATCGAGCACATCGCCCAGCTCAGCCAT 
GGCGACTTCGGCGAGCGCATCGAGATCCGGCGCAAGGACGAACTCGGCAAGCTGGCCCTGGCCGCCAACACG 
CTGCGCGACTTCCTGGTGGACATCTTCGAGCGGCTGCGGCGCAGTACCCGCGACCTGGACAGCGCCAGCGGC 
TCACTGAACGCGATCGCCAGCCTGATGGCGGCCGGTACCCGCGAGCAGTTCAGCCGCACCGACCAGGTCGCC 
ACGGCGATGCAGGAAATGTCCGCCACCGCCCAGGAAGTGGCGCGCTACGCCGGCGACGCGGCCAAGGCCGCC 
GACGAGGCGGACGATTCCGCCCAGCGCGGCGAAGACGTGATGGAAGAAACGATTCGCAGCATCGGCGAGATG 
CGCAAGGAGATCGACCATACGGTGGAGGTCATCCGCCAATTGGAAAGCGATAGCGGCAGGATCGGCAAGGTC 
CTCGACGTGATCCGCGGCATTGCCGAGCAGACCAACCTGCTCGCCCTCAACGCGGCCATCGAAGCCGCCCGC 
GCCGGCGATGCCGGCCGTGGCTTCGCGGTGGTCGCCGACGAGGTCCGCACCCTGGCGCAGCGCACCGCCGAG 
TCCATCGCCGAGATCCACCAGATCATCGATACCGTGCAGAACGGCGCGGTGAATGCCGCGCGCGCCATCGAA 
AGCGGGCAGTCGCGCAGCGAGGCCGGTGCCGAGCAGGTTGCCAACGCCGGCGCCATGCTGCGCCAGATCACC 
GCCTCGGTCGAATCGATCCGCGACATGAACCGCCAGATCGCTACCGCCGCCGAGGAACAGACCGCCGTGGCC 
GAGGACATTTCCCGCAACCTCACGGAAATCGCCTCGATCGCCTCCAGCAACCAGGAACAGGTGGAGCAGACC 
GAAGCCGCCAGCCGTGATCTCCACAACCTCTCCGCGCAACTGGGCGATGCCCTGCAACGCCTGCGGGCCTGA