ViewGene
Locus Name:
GeneID:
Location:

GeneID:6699
TrivialName: PA14_60140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60140
PAO1 Ortholog Locus:
Sequence Length:921
Protein Length:306
Start: 5357740
Stop: 5358660
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84129.1| (AY273869) integrase [Pseudomonas aeruginosa]
Identities = 258/258 (100%), Positives = 258/258 (100%)
Sequence:
ATGACGCCGCAGCAGCTCACCGAGGAGTACATCTTCGCGCACGATCTCCGGGAAGCCAGCGCGAAGATCTAC
CGCGCCGCGACCAAGGCGCTGCTCAAGCACTTCGGTCCTACGGCAACCGTACAGGACGTGGACCACCGGGCT
GTCCTGGGATGGCGACGCAAGGTACTGGAACAAGGCCTGTCCAAGCGGAGCTGGAACACGTACTCGAATCAT
CTGCGGACGATCTGGGGCTATGCCATCGAGCATGAGTTGGTGACGCACTCCCAAGTCAACCCGTTCAGAAAG
ACCACCGTCATTCCCCCCAGGCGAGCAAGCAAAACCGTCGCCGCCGAAGCCATCCTGCTCGCCCGCAATTGG
CTCAACATGCAGGACGGCGCAGAGCGCTGCACCGGCGAACGCGCACGGATCACGCCCGCCTGGTTCTGGCTT
TGCACGTTTGAGGTCTTCTACTTCACCGGCATCCGGTTGAATGCGCTGTTGTGCATCCGCAAGCGCGACATC
GACTGGGAAAATCAACTGATCCTCATCCGCGGCGAGACAGAGAAGACTCACAAAGAGTTCGTAGTGCCAATA
ACGGAGGGGCTTGTGCCTCACCTATCGAGGCTCCTGCAAGAGGCCGATAGAGCCGGATTCGCCGATGACGAC
CAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCC
ATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACCCCGCACCgttttcCGGCACACCCTGGCCAC
CGACTTGATGAAGGCACCCGAGCGGAACATTCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGAC
CACGATGAGCTACATCGAGGCCGACTACGATCACATGCGTGCCGTGCTGCATGCTAG
Translation:
MTPQQLTEEYIFAHDLREASAKIYRAATKALLKHFGPTATVQDVDHRAVLGWRRKVLEQGLSKRSWNTYSNH
LRTIWGYAIEHELVTHSQVNPFRKTTVIPPRRASKTVAAEAILLARNWLNMQDGAERCTGERARITPAWFWL
CTFEVFYFTGIRLNALLCIRKRDIDWENQLILIRGETEKTHKEFVVPITEGLVPHLSRLLQEADRAGFADDD
QLFNVNRFSPHYKSKVMNSDQVEAMYRKLTEKVGVRMTPHRFPAHPGHRLDEGTRAEHSPHEVPAQPLEYPD
HDELHRGRLRSHACRAAC*
AnnotationID:6700GeneID:6699
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 18:06:51
Gene Name:
Confidence Code:3
GeneProduct:xerD-like putative integrase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00589, COG4974
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
RL002






 
Structural Features:
COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair].
CD-Length = 175 residues, only  62.9% aligned. Score = 41.9 bits (98), Expect = 2e-04






   
Genomic Context:
the island PAPI-1






   
Comment:
Similar to xerD (PA3738 and PA14_16040).


















    ReferenceID:13151




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17058




  
Author/Investigator(s):
        





  
Title:
        CDD-research




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:NCBI CD-6699.htm


    		




 
URL:

















    ReferenceID:30486




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6699
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
201506
                           gb|AAP84129.1|
                           (AY273869) integrase [Pseudomonas aeruginosa]
                           435
                           62.06
                           63.21
                           137
                           1354.0
     

     
     
201507
                           gb|AAP82947.1|
                           (AY273870) integrase [Pseudomonas aeruginosa]
                           434
                           61.05
                           62.90
                           136
                           1329.0
     

     
     
201508
                           gb|AAP94680.1|
                           (AY258138) putative integrase [Pseudomonas aeruginosa]
                           434
                           60.59
                           62.90
                           136
                           1323.0
     

     
     
201509
                           gb|AAG02084.1|AF285416_2
                           (AF285416) XerC [Pseudomonas aeruginosa]
                           435
                           59.77
                           62.52
                           137
                           1309.0
     

     
     
201510
                           gb|AAM77365.1|AF521605_1
                           (AF521605) putative integrase XerC [Pseudomonas syringae]
                           493
                           30.42
                           40.16
                           207
                           763.0
     

     






      

          
GC ORFID: 49701How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4621419Stop: 4622339

          
Length: 921


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_RL002 XerC 427 Homolog: Integrase / recombination-related / P.aeruginosa / SG17M (AAG02084) translation of RL002Homolog Bit Score 530.0

          
Other Homologs:  t_RL002 XerC 427 Homolog: Integrase / recombination-related / P.aeruginosa / SG17M (AAG02084) translation of RL002 (BLASTP 530), t_RS02 XerC 426 Homolog: Integrase / recombination-related / P. aeruginosa / SG17M (AAG02084) translation of RS02 (BLASTP 521), psyr_15may02_Scaffold3_revised_gene4751 related to: gi|9930479|gb|AAG02084.1|AF285416_2 (AF285416) XerC [Pseudomonas aeruginosa] (BLASTP 294)

          
GC ORF Sequence

           
ATGACGCCGCAGCAGCTCACCGAGGAGTACATCTTCGCGCACGATCTCCGGGAAGCCAGCGCGAAGATCTAC 
CGCGCCGCGACCAAGGCGCTGCTCAAGCACTTCGGTCCTACGGCAACCGTACAGGACGTGGACCACCGGGCT 
GTCCTGGGATGGCGACGCAAGGTACTGGAACAAGGCCTGTCCAAGCGGAGCTGGAACACGTACTCGAATCAT 
CTGCGGACGATCTGGGGCTATGCCATCGAGCATGAGTTGGTGACGCACTCCCAAGTCAACCCGTTCAGAAAG 
ACCACCGTCATTCCCCCCAGGCGAGCAAGCAAAACCGTCGCCGCCGAAGCCATCCTGCTCGCCCGCAATTGG 
CTCAACATGCAGGACGGCGCAGAGCGCTGCACCGGCGAACGCGCACGGATCACGCCCGCCTGGTTCTGGCTT 
TGCACGTTTGAGGTCTTCTACTTCACCGGCATCCGGTTGAATGCGCTGTTGTGCATCCGCAAGCGCGACATC 
GACTGGGAAAATCAACTGATCCTCATCCGCGGCGAGACAGAGAAGACTCACAAAGAGTTCGTAGTGCCAATA 
ACGGAGGGGCTTGTGCCTCACCTATCGAGGCTCCTGCAAGAGGCCGATAGAGCCGGATTCGCCGATGACGAC 
CAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCC 
ATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACCCCGCACCgttttcCGGCACACCCTGGCCAC 
CGACTTGATGAAGGCACCCGAGCGGAACATTCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGAC 
CACGATGAGCTACATCGAGGCCGACTACGATCACATGCGTGCCGTGCTGCATGCTAG