ViewGene

Locus Name:
GeneID:
Location:

GeneID:669
TrivialName: PA14_15340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15340
PAO1 Ortholog Locus:PA3769
Sequence Length:1578
Protein Length:525
Start: 1299242
Stop: 1300819
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07156.1|AE004796_1 (AE004796) GMP synthase [Pseudomonas aeruginosa PAO1]
Identities = 524/525 (99%), Positives = 525/525 (100%)
Sequence:
ATGTCCCAAGACATTCACGCCCACCGTATCCTGATCCTCGATTTCGGCTCCCAGTACACCCAACTGATCGCC
CGCCGCGTGCGCGAGATCGGCGTGTATTGCGAAATCCATCCCTTCGACATGAGCAACGAGGCGATCATCGCC
TTCGCGCCGCGCGGCATCATCCTCGCCGGCGGTCCCGAGTCGGTGCACGAAGCCGACAGCCCGCGCGCGCCG
CAGGCGGTGTTCGACCTGAAGGTGCCGCTGTTCGGCATCTGCTACGGCATGCAGACCATGGCCGAGCAGATG
GGCGGCAAGGTGCAGGGCTCCGACGTGCGCGAGTTCGGCTACGCCCGCGTCGACGTGGTTGGCAAGGCGCGC
CTGCTGGACGGCATCGAGGACCACGTGGACGACGACGGCGTGCTCGGCCTCGACGTGTGGATGAGCCACGGC
GACAAGGTCACCGAGATGCCGGCCGGCTTCCACATCCTGGCCAGCACCCCGAGCTGCCCGATCGCCGCCATG
GCCGACGATGCCCGCGCCTACTACGGCGTGCAATTCCACCCGGAAGTCACCCACACCAAGCAGGGCCTGCGC
ATTCTCTCGCGCTTCGTCCTCGACATCTGTGGTTGCGCCGCGCTGTGGACCCCCTCGAACATCGTCGACGAC
GCCATCGCCACCGTGCGCGCCCAGGTCGGTTCCTCCAAGGTCCTGCTCGGCCTCTCCGGCGGCGTGGACTCC
TCGGTGGTCGCCGCGCTGCTGCACAAGGCCATCGGCGACCAACTGACCTGCGTGTTCGTCGACAACGGCCTG
CTGCGCCTGCACGAAGGCGACCAGGTGATGGCCATGTTCGCCGAGAACATGGGCGTGAAGGTGATCCGCGCC
AACGCCGAGGACAAGTTCCTCGGCCGCCTGGCCGGCGTCGCCGATCCGGAAGAGAAGCGCAAGATCATCGGC
CGCACCTTCATCGAAGTCTTCGACGAAGAAGCCACCAAGCTGCAGGACGTGAAGTTCCTCGCCCAGGGCACC
ATCTACCCCGACGTGATCGAGTCGGCCGGCGCCAAAACCGGCAAGGCCCACGTGATCAAGTCGCACCACAAC
GTCGGCGGCCTGCCGGAGGACATGCAGTTCGAACTGGTCGAGCCGCTGCGCGAACTGTTCAAGGACGAAGTG
CGCAAGATCGGCCTGGAGCTGGGCCTGCCCTACGACATGGTCTACCGCCACCCGTTCCCCGGCCCGGGCCTG
GGCGTGCGCATCCTCGGCGAGGTGAAGAAGGAGTACGCCGACCTGCTGCGCCAGGCCGACCACATCTTCATC
GAGGAACTGCGCGCCTTCGACTGGTACCACAAGACCAGCCAGGCGTTCGTGGTGTTCCAGCCGGTGAAATCG
GTCGGCGTGGTCGGCGACGGCCGTCGCTACGCCTGGGTCGTCGCCCTGCGCGCGGTGGAGACCATCGACTTC
ATGACCGCGCGCTGGGCGCACCTGCCCTATGAACTGCTGGAGAAGGTCTCGAACCGCATCATCAACGAGATC
GCCGGTATCTCCCGGGTCACCTACGACGTGTCGAGCAAGCCGCCGGCGACTATCGAGTGGGAGTGA
Translation:
MSQDIHAHRILILDFGSQYTQLIARRVREIGVYCEIHPFDMSNEAIIAFAPRGIILAGGPESVHEADSPRAP
QAVFDLKVPLFGICYGMQTMAEQMGGKVQGSDVREFGYARVDVVGKARLLDGIEDHVDDDGVLGLDVWMSHG
DKVTEMPAGFHILASTPSCPIAAMADDARAYYGVQFHPEVTHTKQGLRILSRFVLDICGCAALWTPSNIVDD
AIATVRAQVGSSKVLLGLSGGVDSSVVAALLHKAIGDQLTCVFVDNGLLRLHEGDQVMAMFAENMGVKVIRA
NAEDKFLGRLAGVADPEEKRKIIGRTFIEVFDEEATKLQDVKFLAQGTIYPDVIESAGAKTGKAHVIKSHHN
VGGLPEDMQFELVEPLRELFKDEVRKIGLELGLPYDMVYRHPFPGPGLGVRILGEVKKEYADLLRQADHIFI
EELRAFDWYHKTSQAFVVFQPVKSVGVVGDGRRYAWVVALRAVETIDFMTARWAHLPYELLEKVSNRIINEI
AGISRVTYDVSSKPPATIEWE*
AnnotationID:678GeneID:669
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 13:01:59
Gene Name:guaA
Confidence Code:2
GeneProduct:GMP synthase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0519,COG0518
Secondary Functional Category(ies):
EC Number:6.3.5.2
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66657.1|AE016293_7 (AE016777) GMP synthase [Pseudomonas putida KT2440]
          Length = 525

 Score =  942 bits (2434), Expect = 0.0
 Identities = 464/525 (88%), Positives = 492/525 (93%)

>gb|AAN81476.1|AE016764_158 (AE016764) GMP synthase [glutamine-hydrolyzing] [Escherichia coli
           CFT073]
          Length = 525

 Score =  768 bits (1983), Expect = 0.0
 Identities = 372/525 (70%), Positives = 438/525 (83%)
Structural Features:
COG0519, GuaA, GMP synthase, PP-ATPase domain/subunit 
[Nucleotide transport and metabolism]
CD-Length = 315 residues, 100.0% aligned
Score =  543 bits (1400), Expect = 2e-155
Identities = 216/319 (67%), Positives = 256/319 (80%), Gaps = 4/319 (1%)

COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain 
[Nucleotide transport and metabolism]
CD-Length = 198 residues,  98.5% aligned
Score =  220 bits (562), Expect = 3e-58
Identities = 91/204 (44%), Positives = 119/204 (58%), Gaps = 16/204 (7%)
Genomic Context:
Comment:
ReferenceID:1341
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18483
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34271
Author/Investigator(s): Tiedeman AA, Smith JM, Zalkin H.
Title: Nucleotide sequence of the guaA gene encoding GMP synthetase of Escherichia coli K12.
PubMed: 3894345
MedLine:
Source:
J Biol Chem. 1985 Jul 25;260(15):8676-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3894345
ReferenceID:34272
Author/Investigator(s): Mantsala P, Zalkin H.
Title: Cloning and sequence of Bacillus subtilis purA and guaA, involved in the conversion of IMP to AMP and GMP.
PubMed: 1312531
MedLine:
Source:
J Bacteriol. 1992 Mar;174(6):1883-90.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1312531
ReferenceID:34273
Author/Investigator(s): Grimaldi C, Dutertre M, Simonet JM.
Title: Genetic organization and polymorphism of the guaA gene encoding the GMP synthetase in Lactobacillus rhamnosus.
PubMed: 10688693
MedLine:
Source:
Curr Microbiol. 2000 Apr;40(4):245-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10688693
Homologs By Global Alignment
Gene ID:669

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1124 PA3769_tr translation of PA3769 525 99.80 99.99 0 2719.0
41978 gb|AAG07156.1|AE004796_1 (AE004796) GMP synthase [Pseudomonas aeruginosa PAO1] 525 99.80 99.99 0 2719.0
41979 gb|AAN66657.1|AE016293_7 (AE016777) GMP synthase [Pseudomonas putida KT2440] 525 88.38 93.71 0 2434.0
41980 gb|AAO54971.1| (AE016861) GMP synthase [Pseudomonas syringae pv. tomato str. DC3000] 525 86.66 93.33 0 2416.0
41981 gb|AAD24213.1| (AF086638) unknown [Pseudomonas putida GB-1] 525 72.95 77.90 89 2010.0
GC ORFID: 43671How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3769Glimmer Score:
Start: 3654695Stop: 3653118
Length: 1578
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3769 translation of PA3769Homolog Bit Score 1051.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4541 (ORF: BLASTX 939.0), t_PA3769 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCCAAGACATTCACGCCCACCGTATCCTGATCCTCGATTTCGGCTCCCAGTACACCCAACTGATCGCC
CGCCGCGTGCGCGAGATCGGCGTGTATTGCGAAATCCATCCCTTCGACATGAGCAACGAGGCGATCATCGCC
TTCGCGCCGCGCGGCATCATCCTCGCCGGCGGTCCCGAGTCGGTGCACGAAGCCGACAGCCCGCGCGCGCCG
CAGGCGGTGTTCGACCTGAAGGTGCCGCTGTTCGGCATCTGCTACGGCATGCAGACCATGGCCGAGCAGATG
GGCGGCAAGGTGCAGGGCTCCGACGTGCGCGAGTTCGGCTACGCCCGCGTCGACGTGGTTGGCAAGGCGCGC
CTGCTGGACGGCATCGAGGACCACGTGGACGACGACGGCGTGCTCGGCCTCGACGTGTGGATGAGCCACGGC
GACAAGGTCACCGAGATGCCGGCCGGCTTCCACATCCTGGCCAGCACCCCGAGCTGCCCGATCGCCGCCATG
GCCGACGATGCCCGCGCCTACTACGGCGTGCAATTCCACCCGGAAGTCACCCACACCAAGCAGGGCCTGCGC
ATTCTCTCGCGCTTCGTCCTCGACATCTGTGGTTGCGCCGCGCTGTGGACCCCCTCGAACATCGTCGACGAC
GCCATCGCCACCGTGCGCGCCCAGGTCGGTTCCTCCAAGGTCCTGCTCGGCCTCTCCGGCGGCGTGGACTCC
TCGGTGGTCGCCGCGCTGCTGCACAAGGCCATCGGCGACCAACTGACCTGCGTGTTCGTCGACAACGGCCTG
CTGCGCCTGCACGAAGGCGACCAGGTGATGGCCATGTTCGCCGAGAACATGGGCGTGAAGGTGATCCGCGCC
AACGCCGAGGACAAGTTCCTCGGCCGCCTGGCCGGCGTCGCCGATCCGGAAGAGAAGCGCAAGATCATCGGC
CGCACCTTCATCGAAGTCTTCGACGAAGAAGCCACCAAGCTGCAGGACGTGAAGTTCCTCGCCCAGGGCACC
ATCTACCCCGACGTGATCGAGTCGGCCGGCGCCAAAACCGGCAAGGCCCACGTGATCAAGTCGCACCACAAC
GTCGGCGGCCTGCCGGAGGACATGCAGTTCGAACTGGTCGAGCCGCTGCGCGAACTGTTCAAGGACGAAGTG
CGCAAGATCGGCCTGGAGCTGGGCCTGCCCTACGACATGGTCTACCGCCACCCGTTCCCCGGCCCGGGCCTG
GGCGTGCGCATCCTCGGCGAGGTGAAGAAGGAGTACGCCGACCTGCTGCGCCAGGCCGACCACATCTTCATC
GAGGAACTGCGCGCCTTCGACTGGTACCACAAGACCAGCCAGGCGTTCGTGGTGTTCCAGCCGGTGAAATCG
GTCGGCGTGGTCGGCGACGGCCGTCGCTACGCCTGGGTCGTCGCCCTGCGCGCGGTGGAGACCATCGACTTC
ATGACCGCGCGCTGGGCGCACCTGCCCTATGAACTGCTGGAGAAGGTCTCGAACCGCATCATCAACGAGATC
GCCGGTATCTCCCGGGTCACCTACGACGTGTCGAGCAAGCCGCCGGCGACTATCGAGTGGGAGTGA