ViewGene

Locus Name:
GeneID:
Location:

GeneID:668
TrivialName: PA14_18450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18450
PAO1 Ortholog Locus:PA3548
Sequence Length:1563
Protein Length:520
Start: 1583774
Stop: 1582212
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAB09781.1| (U50202) AlgI [Pseudomonas aeruginosa]
Identities = 519/520 (99%), Positives = 519/520 (99%)
Sequence:
ATGGTCTTTTCTTCAAACGTGTTCCTGTTCCTGTTCCTGCCGGTCTTTCTCGGCCTGTACTACCTGAGCGGC
GAACGTTACCGGAACCTGCTGCTGCTGATCGCCAGCTACGTGTTCTACGCCTGGTGGCGGGTGGACTTCCTC
CTGCTGTTCGCCGGGGTCACCGTCTTCAACTACTGGATCGGCCTGCGCATCGGCGCCGCCGGCGTACGCACC
AGGGCCGCGCAACGCTGGCTGATCCTCGGCGTGGTGGTCGACCTCTGCGTGCTCGGCTACTTCAAGTACGCC
AACTTCGGCGTCGACAGCCTCAACGAGATCATCACCTCGTTCGGCATGCAGCCGTTCGTGCTGACCCACATC
CTGCTGCCGATCGGCATCTCCTTCTACACCTTCGAGTCGATCAGCTACATCATCGACGTCTACCGCGGCGAT
ACCCCGGCGACCCACAACCTGATCGACTTCGCCGCCTTCGTCGCGATCTTCCCGCACCTGATCGCCGGCCCG
GTGCTGCGCTTCAAGGACCTGGTCGACCAGTTCAACCACCGCACCCACACCGTCGACAAGTTCGCCGAAGGC
TGTACCCGCTTCATGCAGGGCTTCGTCAAGAAGGTGTTCATCGCCGACACCCTGGCCGCCCTCGCCGACCAC
TGCTTCGCCCTGCAGAACCCGACCACCGGCGACGCCTGGCTCGGCGCCCTGGCCTACACCGCGCAGCTCTAC
TTCGACTTCTCCGGCTACAGCGACATGGCCATCGGCCTCGGCCTGATGATGGGCTTCCGCTTCATGGAGAAC
TTCAACCAGCCCTACATCAGCCAGTCGATCACCGAGTTCTGGCGGCGCTGGCACATCAGCCTGTCGACCTGG
CTGCGCGACTACCTCTACATCAGCCTGGGCGGCAACCGCGGCAGCACCTTCCAGACCTACCGCAACCTGTTC
CTGACCATGCTCCTCGGCGGCCTGTGGCACGGCGCCAACTTCACCTACATCATCTGGGGCGCCTGGCACGGC
ATGTGGCTGGCGATCGAGCGGGCCCTCGGAGTGAACGCCGCGCCGCGCGTGCTCAACCCGTTGAAGTGGGCG
TTCACCTTCCTCCTGGTGGTGATCGGCTGGGTGATCTTCCGCGCCGAGAACCTGCAGGTCGCCTGGCGCATG
TACGAAGCCATGTTCAGCTTCGGCACCTGGCAGCTCTCCGAACTGAACCGCGCCAGCCTCACCGGCCTGCAG
GTCGGCACCCTGGTCCTGGCCTACCTGGTGCTGACGTTCTTCGGCCTGCGCCAGTTCTACAACCAGCCATTG
CAGACCAAGGCGCCCAAAGCCGCGGCGAACAGCGACGAAGTGGCCGCCGACGGCCCGGCCAGTGCCCAGCCG
CGCGCCCCGCGCGAGGCCGCCGGCGACCCGGCGGCGATCGCCTACTCGCCGAGCGGCGCGCTGGTCTACCAG
CCGAGCTGGCTCAGCCAGTTGCCCGTCCTGGCCACCCGCCTGGCGCTGCTCCTGCTGTTCGCCGCCTCGGTG
CTGAAGCTCTCCGCGCAGAGCTACTCGCCATTCCTCTACTTCCAGTTCTGA
Translation:
MVFSSNVFLFLFLPVFLGLYYLSGERYRNLLLLIASYVFYAWWRVDFLLLFAGVTVFNYWIGLRIGAAGVRT
RAAQRWLILGVVVDLCVLGYFKYANFGVDSLNEIITSFGMQPFVLTHILLPIGISFYTFESISYIIDVYRGD
TPATHNLIDFAAFVAIFPHLIAGPVLRFKDLVDQFNHRTHTVDKFAEGCTRFMQGFVKKVFIADTLAALADH
CFALQNPTTGDAWLGALAYTAQLYFDFSGYSDMAIGLGLMMGFRFMENFNQPYISQSITEFWRRWHISLSTW
LRDYLYISLGGNRGSTFQTYRNLFLTMLLGGLWHGANFTYIIWGAWHGMWLAIERALGVNAAPRVLNPLKWA
FTFLLVVIGWVIFRAENLQVAWRMYEAMFSFGTWQLSELNRASLTGLQVGTLVLAYLVLTFFGLRQFYNQPL
QTKAPKAAANSDEVAADGPASAQPRAPREAAGDPAAIAYSPSGALVYQPSWLSQLPVLATRLALLLLFAASV
LKLSAQSYSPFLYFQF*
AnnotationID:677GeneID:668
AnnotatorUID: danlee
Modification Date/Time: 2006-03-11 16:04:03
Gene Name:algI
Confidence Code:1
GeneProduct: alginate o-acetyltransferase AlgI
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03062,COG1696
Secondary Functional Category(ies):Adaptation, protection; Cell wall / LPS / capsule
EC Number:2.3.1.-
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66904.1|AE016318_11 (AE016778) alginate O-acetylation protein AlgI [Pseudomonas putida
           KT2440]
          Length = 485

 Score =  827 bits (2136), Expect = 0.0
 Identities = 406/520 (78%), Positives = 439/520 (84%), Gaps = 35/520 (6%)

>emb|CAD73424.1| (BX294139) alginate o-acetyltransferase algI [Pirellula sp.]
          Length = 470

 Score =  335 bits (858), Expect = 5e-91
 Identities = 179/393 (45%), Positives = 245/393 (62%), Gaps = 12/393 (3%)
Structural Features:
pfam03062, MBOAT, MBOAT family. 
CD-Length = 309 residues,  96.8% aligned
Score =  154 bits (389), Expect = 3e-38
Identities = 101/300 (33%), Positives = 146/300 (48%), Gaps = 32/300 (10%)

COG1696, DltB, Predicted membrane protein involved in D-alanine export 
[Cell envelope biogenesis, outer membrane]
CD-Length = 425 residues, 100.0% aligned
Score =  331 bits (851), Expect = 9e-92
Identities = 167/438 (38%), Positives = 235/438 (53%), Gaps = 27/438 (6%)
Genomic Context:
Comment:
ReferenceID:1339
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18481
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32019
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:668_cdd.html
URL:
ReferenceID:34137
Author/Investigator(s): Franklin MJ, Ohman DE.
Title: Identification of algI and algJ in the Pseudomonas aeruginosa alginate biosynthetic gene cluster which are required for alginate O acetylation.
PubMed: 8636017
MedLine:
Source:
J Bacteriol. 1996 Apr;178(8):2186-95.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8636017
ReferenceID:34138
Author/Investigator(s): Franklin MJ, Douthit SA, McClure MA.
Title: Evidence that the algI/algJ gene cassette, required for O acetylation of Pseudomonas aeruginosa alginate, evolved by lateral gene transfer.
PubMed: 15231808
MedLine:
Source:
J Bacteriol. 2004 Jul;186(14):4759-73.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15231808
Homologs By Global Alignment
Gene ID:668

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
41958 gb|AAB09781.1| (U50202) AlgI [Pseudomonas aeruginosa] 520 99.80 99.80 0 2730.0
1123 PA3548_tr translation of PA3548 520 99.23 99.42 0 2717.0
41959 gb|AAG06936.1|AE004775_7 (AE004775) alginate o-acetyltransferase AlgI [Pseudomonas aeruginosa PAO1] 520 99.23 99.42 0 2717.0
41960 gb|AAC04568.1| (AF027499) AlgI [Azotobacter vinelandii] 520 79.80 87.50 21 2212.0
41962 gb|AAN66904.1|AE016318_11 (AE016778) alginate O-acetylation protein AlgI [Pseudomonas putida KT2440] 520 78.46 84.61 35 2158.0
GC ORFID: 43670How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3548Glimmer Score:
Start: 3370161Stop: 3371723
Length: 1563
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3548 translation of PA3548Homolog Bit Score 1051.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4999 (ORF: BLASTX 834.0), t_PA3548 (ORF: GLIMMER)
GC ORF Sequence
ATGGTCTTTTCTTCAAACGTGTTCCTGTTCCTGTTCCTGCCGGTCTTTCTCGGCCTGTACTACCTGAGCGGC
GAACGTTACCGGAACCTGCTGCTGCTGATCGCCAGCTACGTGTTCTACGCCTGGTGGCGGGTGGACTTCCTC
CTGCTGTTCGCCGGGGTCACCGTCTTCAACTACTGGATCGGCCTGCGCATCGGCGCCGCCGGCGTACGCACC
AGGGCCGCGCAACGCTGGCTGATCCTCGGCGTGGTGGTCGACCTCTGCGTGCTCGGCTACTTCAAGTACGCC
AACTTCGGCGTCGACAGCCTCAACGAGATCATCACCTCGTTCGGCATGCAGCCGTTCGTGCTGACCCACATC
CTGCTGCCGATCGGCATCTCCTTCTACACCTTCGAGTCGATCAGCTACATCATCGACGTCTACCGCGGCGAT
ACCCCGGCGACCCACAACCTGATCGACTTCGCCGCCTTCGTCGCGATCTTCCCGCACCTGATCGCCGGCCCG
GTGCTGCGCTTCAAGGACCTGGTCGACCAGTTCAACCACCGCACCCACACCGTCGACAAGTTCGCCGAAGGC
TGTACCCGCTTCATGCAGGGCTTCGTCAAGAAGGTGTTCATCGCCGACACCCTGGCCGCCCTCGCCGACCAC
TGCTTCGCCCTGCAGAACCCGACCACCGGCGACGCCTGGCTCGGCGCCCTGGCCTACACCGCGCAGCTCTAC
TTCGACTTCTCCGGCTACAGCGACATGGCCATCGGCCTCGGCCTGATGATGGGCTTCCGCTTCATGGAGAAC
TTCAACCAGCCCTACATCAGCCAGTCGATCACCGAGTTCTGGCGGCGCTGGCACATCAGCCTGTCGACCTGG
CTGCGCGACTACCTCTACATCAGCCTGGGCGGCAACCGCGGCAGCACCTTCCAGACCTACCGCAACCTGTTC
CTGACCATGCTCCTCGGCGGCCTGTGGCACGGCGCCAACTTCACCTACATCATCTGGGGCGCCTGGCACGGC
ATGTGGCTGGCGATCGAGCGGGCCCTCGGAGTGAACGCCGCGCCGCGCGTGCTCAACCCGTTGAAGTGGGCG
TTCACCTTCCTCCTGGTGGTGATCGGCTGGGTGATCTTCCGCGCCGAGAACCTGCAGGTCGCCTGGCGCATG
TACGAAGCCATGTTCAGCTTCGGCACCTGGCAGCTCTCCGAACTGAACCGCGCCAGCCTCACCGGCCTGCAG
GTCGGCACCCTGGTCCTGGCCTACCTGGTGCTGACGTTCTTCGGCCTGCGCCAGTTCTACAACCAGCCATTG
CAGACCAAGGCGCCCAAAGCCGCGGCGAACAGCGACGAAGTGGCCGCCGACGGCCCGGCCAGTGCCCAGCCG
CGCGCCCCGCGCGAGGCCGCCGGCGACCCGGCGGCGATCGCCTACTCGCCGAGCGGCGCGCTGGTCTACCAG
CCGAGCTGGCTCAGCCAGTTGCCCGTCCTGGCCACCCGCCTGGCGCTGCTCCTGCTGTTCGCCGCCTCGGTG
CTGAAGCTCTCCGCGCAGAGCTACTCGCCATTCCTCTACTTCCAGTTCTGA