ViewGene
Locus Name:
GeneID:
Location:

GeneID:667
TrivialName: PA14_59290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59290
PAO1 Ortholog Locus:
Sequence Length:1581
Protein Length:526
Start: 5282137
Stop: 5283717
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84207.1| (AY273869) PilQ2 [Pseudomonas aeruginosa]
Identities = 526/526 (100%), Positives = 526/526 (100%)
Sequence:
ATGACGAACCTTCAGATTGCCGCGCTTGCGCAGCCCTCCATGGTGACCCAACTGCTCACCGCCGACGGTGGT
GAATGGGAGGTATCGAAGCACCTGCAGGAAATCATGGCTCTGGCTGCCGACGGCACGCTCTATCTATCGGAG
AGCCACCAGAACGACATACACGTTCTGTCGTTCATCGACCGTCTCGATCGCCGTGGCTTCCGATACCAGCTC
AACCTCACCGACCTGCAGACCATTCACCAGCTTTACCGCGCCGTCGCCATGGACGGCCTGGTCGATAGCGAT
GGCCAGCGCGCCACCCAGATGCAGGAGCGCGTGGTCAAGATCATTCGTAAGGCCACTGAGCTGCGCGCCAGT
GACGTGCATTTCGTCGTGAGTCCCGCCGGCACCGGCAGCAAGATCCGTTTCCGCGTCGACGGCCTGCTGAAG
ACCGTCGAGCAGTTCCGCAGCCAGGAGCTGCACGAACTCTGTGCAACCATCTACCAATCCATGTGCGACGTG
GCCGAGCCACTGTTCAAGCCGCAACTGGACCAGGACGCGCGGATGAGCCAGACCTTCGTCGAGAAGCTCAAC
CTGTTCAGTGCCCGGATCGCCACCCGCCCGCGTGCCGGGGGGTTCCTGATGATCCTGCGACTGCTCTACGAC
GACACCGGCCTCGACAGCCTGGAGCAGCTCGGCTACCTGCCCGAGCAGAACGCACTGTTCGATCGCATGATG
CGTATGCCCTACGGCATCAACATCCTGTCCGGCCCCACCGGGTCAGGAAAGTCGATGACCTTGAAGGTCACC
CTGGAAGGCCTCGACAAGCTCCATGGCGGATCCAAGCACATCCTGACCATCGAGGATCCGCCGGAATACCGC
ATTCGCGGCGAAGGCATCAACCAGACCCCACTGGTCTACGACGCCACCGACCCAGACGCAGAACGCCAGGCC
TGGGCCGCGGGCATCGCCAACGGCATGCGCCTGGATCCGGACTACATGATGATCGGCGAAGTACGCGACCTC
TTCGCCGCTGTCGCCGCGTTCCGTGGTGCGATGACCGGGCACGGCCTATGGTCGACCCTGCACACCAACAGC
GCGATCGGCATTGTCCAGCGCCTGAAGGACCTGGGCGTCGACCCCGGCTTGCTGTTCGATCCGGCCCTGCTG
ACCGGCCTGATCAACCAGAGCCTGCTGCCCAAGCTCTGCCCCCACTGCAAAGTGCGCTTCCAAGACCACCAA
GACCAACTCGCGCCCGACTTGGTCGAACGGGTCCGACGCTTGACCGATGTTTCCCAGGTTCACGTCAAGGGG
CCTGGCTGCCAGGCCTGCCGTGGCTCCGGGGTCAACGGCCGCTCGATCGTCGCCGAGGTGGTTCTGCCCACC
CTCGCCTTCATGCGTGTGTTCGCCAAAGGCGGCCCAGCCGAGGCACGCAACTACTGGGTCAAGACCATGCAG
GGCATCACCAAGCACGCCCACGCCATCCGCCGCATCAACGAGGGCATGTTCGACCCGCAGATGGTCGAGGAT
TTCATTGGGCCACTCGACTTCGATGAGCATCTGCTCGACGACAGCTTCTACTCGCAGGAGGCGTGCTGA
Translation:
MTNLQIAALAQPSMVTQLLTADGGEWEVSKHLQEIMALAADGTLYLSESHQNDIHVLSFIDRLDRRGFRYQL
NLTDLQTIHQLYRAVAMDGLVDSDGQRATQMQERVVKIIRKATELRASDVHFVVSPAGTGSKIRFRVDGLLK
TVEQFRSQELHELCATIYQSMCDVAEPLFKPQLDQDARMSQTFVEKLNLFSARIATRPRAGGFLMILRLLYD
DTGLDSLEQLGYLPEQNALFDRMMRMPYGINILSGPTGSGKSMTLKVTLEGLDKLHGGSKHILTIEDPPEYR
IRGEGINQTPLVYDATDPDAERQAWAAGIANGMRLDPDYMMIGEVRDLFAAVAAFRGAMTGHGLWSTLHTNS
AIGIVQRLKDLGVDPGLLFDPALLTGLINQSLLPKLCPHCKVRFQDHQDQLAPDLVERVRRLTDVSQVHVKG
PGCQACRGSGVNGRSIVAEVVLPTLAFMRVFAKGGPAEARNYWVKTMQGITKHAHAIRRINEGMFDPQMVED
FIGPLDFDEHLLDDSFYSQEAC*
AnnotationID:676GeneID:667
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 08:08:22
Gene Name:pilQ2
Confidence Code:5
GeneProduct:type IV B pilus protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01129,pfam00437
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAA77977.1| (AB027308) nucleotide-binding protein [Plasmid R64]
          Length = 517

 Score =  295 bits (754), Expect = 6e-79
 Identities = 172/441 (39%), Positives = 262/441 (59%), Gaps = 30/441 (6%)

>dbj|BAB91689.1| (AP005147) nucleotide-binding protein [Salmonella typhimurium]
          Length = 517

 Score =  295 bits (754), Expect = 6e-79
 Identities = 172/441 (39%), Positives = 262/441 (59%), Gaps = 30/441 (6%)







 
Structural Features:
cd01129, PulE-GspE, PulE/GspE 
CD-Length = 264 residues,  97.0% aligned
Score =  183 bits (467), Expect = 3e-47

pfam00437, GSPII_E, Type II/IV secretion system protein.
CD-Length = 283 residues,  92.9% aligned
Score =  132 bits (334), Expect = 9e-32
Identities = 86/289 (29%), Positives = 129/289 (44%), Gaps = 34/289 (11%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1337




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18479




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38284




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:667_cdd.html


    		




 
URL:

















    ReferenceID:38285




  
Author/Investigator(s):
        Martin PR, Watson AA, McCaul TF, Mattick JS.





  
Title:
        Characterization of a five-gene cluster required for the biogenesis of type 4 fimbriae in Pseudomonas aeruginosa.




  
PubMed:
        7565110


MedLine:
        




    
Source:
Mol Microbiol. 1995 May;16(3):497-508.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7565110&query_hl=4&itool=pubmed_DocSum

















    ReferenceID:38286




  
Author/Investigator(s):
        Martin PR, Hobbs M, Free PD, Jeske Y, Mattick JS.





  
Title:
        Characterization of pilQ, a new gene required for the biogenesis of type 4 fimbriae in Pseudomonas aeruginosa.




  
PubMed:
        7901733


MedLine:
        




    
Source:
Mol Microbiol. 1993 Aug;9(4):857-68.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7901733&query_hl=4&itool=pubmed_DocSum









           
Homologs By Global Alignment 

           

       



     
Gene ID:667
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
41956
                           gb|AAP84207.1|
                           (AY273869) PilQ2 [Pseudomonas aeruginosa]
                           526
                           99.99
                           99.99
                           0
                           2723.0
     

     
     
41957
                           emb|CAE14034.1|
                           (BX571864) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           537
                           40.03
                           56.61
                           28
                           962.0
     

     






      

          
GC ORFID: 43669How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL082Glimmer Score: 

          
Start: 4545816Stop: 4547396

          
Length: 1581


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL082 pilQ 526 Homolog: PilQ / Type IVB pilus biosynthesis; Pathogenicity-related / S.typhimurium / plasmid R64 (BAB91689) translation of RL082Homolog Bit Score 1053.0

          
Other Homologs:  t_RL082 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGAACCTTCAGATTGCCGCGCTTGCGCAGCCCTCCATGGTGACCCAACTGCTCACCGCCGACGGTGGT 
GAATGGGAGGTATCGAAGCACCTGCAGGAAATCATGGCTCTGGCTGCCGACGGCACGCTCTATCTATCGGAG 
AGCCACCAGAACGACATACACGTTCTGTCGTTCATCGACCGTCTCGATCGCCGTGGCTTCCGATACCAGCTC 
AACCTCACCGACCTGCAGACCATTCACCAGCTTTACCGCGCCGTCGCCATGGACGGCCTGGTCGATAGCGAT 
GGCCAGCGCGCCACCCAGATGCAGGAGCGCGTGGTCAAGATCATTCGTAAGGCCACTGAGCTGCGCGCCAGT 
GACGTGCATTTCGTCGTGAGTCCCGCCGGCACCGGCAGCAAGATCCGTTTCCGCGTCGACGGCCTGCTGAAG 
ACCGTCGAGCAGTTCCGCAGCCAGGAGCTGCACGAACTCTGTGCAACCATCTACCAATCCATGTGCGACGTG 
GCCGAGCCACTGTTCAAGCCGCAACTGGACCAGGACGCGCGGATGAGCCAGACCTTCGTCGAGAAGCTCAAC 
CTGTTCAGTGCCCGGATCGCCACCCGCCCGCGTGCCGGGGGGTTCCTGATGATCCTGCGACTGCTCTACGAC 
GACACCGGCCTCGACAGCCTGGAGCAGCTCGGCTACCTGCCCGAGCAGAACGCACTGTTCGATCGCATGATG 
CGTATGCCCTACGGCATCAACATCCTGTCCGGCCCCACCGGGTCAGGAAAGTCGATGACCTTGAAGGTCACC 
CTGGAAGGCCTCGACAAGCTCCATGGCGGATCCAAGCACATCCTGACCATCGAGGATCCGCCGGAATACCGC 
ATTCGCGGCGAAGGCATCAACCAGACCCCACTGGTCTACGACGCCACCGACCCAGACGCAGAACGCCAGGCC 
TGGGCCGCGGGCATCGCCAACGGCATGCGCCTGGATCCGGACTACATGATGATCGGCGAAGTACGCGACCTC 
TTCGCCGCTGTCGCCGCGTTCCGTGGTGCGATGACCGGGCACGGCCTATGGTCGACCCTGCACACCAACAGC 
GCGATCGGCATTGTCCAGCGCCTGAAGGACCTGGGCGTCGACCCCGGCTTGCTGTTCGATCCGGCCCTGCTG 
ACCGGCCTGATCAACCAGAGCCTGCTGCCCAAGCTCTGCCCCCACTGCAAAGTGCGCTTCCAAGACCACCAA 
GACCAACTCGCGCCCGACTTGGTCGAACGGGTCCGACGCTTGACCGATGTTTCCCAGGTTCACGTCAAGGGG 
CCTGGCTGCCAGGCCTGCCGTGGCTCCGGGGTCAACGGCCGCTCGATCGTCGCCGAGGTGGTTCTGCCCACC 
CTCGCCTTCATGCGTGTGTTCGCCAAAGGCGGCCCAGCCGAGGCACGCAACTACTGGGTCAAGACCATGCAG 
GGCATCACCAAGCACGCCCACGCCATCCGCCGCATCAACGAGGGCATGTTCGACCCGCAGATGGTCGAGGAT 
TTCATTGGGCCACTCGACTTCGATGAGCATCTGCTCGACGACAGCTTCTACTCGCAGGAGGCGTGCTGA