ViewGene
Locus Name:
GeneID:
Location:

GeneID:6663
TrivialName: PA14_57610
AnnotatorUID: diggins
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57610
PAO1 Ortholog Locus:
Sequence Length:1326
Protein Length:441
Start: 5132040
Stop: 5130715
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07823.1|AE004858_1 (AE004858) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 99/99 (100%), Positives = 99/99 (100%)
Sequence:
ATGATACCGAGAACCCTGTTCAGCTCCGACCACGAACTGTTTCGCGACAGCGTGCGCAAGTTCCTCGAACAG
GAAGCCGTGCCTTTCCATCACCAATGGGAAAAGGATGGGCATGTCGACCGCGCGCTCTGGAACAAGGCCGGC
GAGGCCGGAATGCTCTGTTCGCACCTGCCGGAAGAGTATGGCGGGATGGGCGCGGACTTCCTCTACAGCGCC
GTGGTCATCGAAGAGATCGGTCGGGCCGGCCTGACCGGGATCGGTTTCTCCCTGCATTCGGACATCGCTGCG
CCCTACATTCGGACATcgcTGCGCCATCGCTGCGCCCTACATCCTCCACTACGGCAGCGAGGCGCTGAAGCG
CAAGTACCTGCCGAAGCTGGTATCCGGCGAGATGGTCGCGGCCATCGCCATGACCGAGCCGGGGGCCGGTTC
CGACCTGCAAGGGGTGAAGACCACGGCGGTACTGGATGGCGACGAGTACGTCATCAATGGCTCGAAGACCTT
CATCACCAACGGCTTCCTCGCCGACCTGGTGATCGTGGTGGCGAAGACCGATCCGAAGGCTGGCGCCAAGGG
CATAAGCCTGTTCGTGGTCGAGGCGGGTACGCCGGGTTTCAGCAAGGGCAAGCGCCTGGAGAAGGTCGGGAT
GAAGGCCCAGGACACCTCCGAGCTGTTCTTCCAGGATGTGCGGATTCCCCGGGAGAACCTGCTCGGCAAGGA
CGGCCAGGGATTCATCTACCTGATGCAGGAGCTGCCGCAGGAGCGCCTGACCGTCGGTATCGGCGCGCTGGC
GTCGGCCGAGGCGGCCCTGCAATGGACGCTCGACTACACTCGCGAGCGCAAGGCGTTCGGCAAGTCGGTGGC
GGACTTCCAGAATACCCGCTTCAAGCTTGCCGAGATGGCTACCGAGATCCAGGTCGGCCGGGTCTTCGTCGA
TCGCTGCATGGAGCTGCATCTCCAGGGCAAGCTGGACGTACCCACCGCCGCCATGTGCAAGTACTGGACGAC
GGACCTGCAATGCAAGGTGCTCGACGAATGCGTGCAGTTGCACGGCGGCTACGGCTTCATGTGGGAATATCC
GGTGGCGCGGGCCTGGGCCGATGCCCGGGTACAGCGGATCTACGCCGGTACCAACGAGATCATGAAGGAGAT
CATCGCGCGGGCCCTGTGAGGCGCTCCTGGCCACCGGGAGGGGCGAACGAGCGCATTGCGCGGTTGTCCGCC
GAACCCGCGGCAGCGCCAGGCCCCTGGAGCCTCAGGGAGCCGGGTTCGGTTGCTCCCGGTGGATCGCATCGA
TACCGGCGAGCACCTCCTCGTCCAGCCTGA
Translation:
MIPRTLFSSDHELFRDSVRKFLEQEAVPFHHQWEKDGHVDRALWNKAGEAGMLCSHLPEEYGGMGADFLYSA
VVIEEIGRAGLTGIGFSLHSDIAAPYIRTSLRHRCALHPPLRQRGAEAQVPAEAGIRRDGRGHRHDRAGGRF
RPARGEDHGGTGWRRVRHQWLEDLHHQRLPRRPGDRGGEDRSEGWRQGHKPVRGRGGYAGFQQGQAPGEGRD
EGPGHLRAVLPGCADSPGEPARQGRPGIHLPDAGAAAGAPDRRYRRAGVGRGGPAMDARLHSRAQGVRQVGG
GLPEYPLQACRDGYRDPGRPGLRRSLHGAASPGQAGRTHRRHVQVLDDGPAMQGARRMRAVARRLRLHVGIS
GGAGLGRCPGTADLRRYQRDHEGDHRAGPVRRSWPPGGANERIARLSAEPAAAPGPWSLREPGSVAPGGSHR
YRRAPPRPA*
AnnotationID:6664GeneID:6663
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 21:09:11
Gene Name:
Confidence Code:3
GeneProduct:putative Acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG0141,pfam02771,KOG0139
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
KOG0141, Isovaleryl-CoA dehydrogenase 
[Amino acid transport and metabolism, Lipid transport and metabolism]

pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain. The N-terminal 
domain of Acyl-CoA dehydrogenase is an all-alpha domain.








   
Genomic Context:






   
Comment:
possible frameshift with gene #6662


















    ReferenceID:13093




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30421




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31475




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6663_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6663
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8020
                           PA4435_tr
                           translation of PA4435
                           517
                           30.94
                           36.17
                           212
                           511.0
     

     
     
201186
                           gb|AAG07823.1|AE004858_1
                           (AE004858) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           517
                           30.94
                           36.17
                           212
                           511.0
     

     
     
201189
                           gb|AAK47113.1|
                           (AE007108) acyl-CoA dehydrogenase [Mycobacterium tuberculosis CDC1551]
                           523
                           23.32
                           32.50
                           219
                           248.0
     

     
     
201190
                           emb|CAD94928.1|
                           (BX248343) PROBABLE ACYL-CoA DEHYDROGENASE FADE20 [Mycobacterium bovis subsp. bovis AF2122/97]
                           523
                           23.32
                           32.50
                           219
                           246.0
     

     
     
201188
                           emb|CAB39720.1|
                           (AL939129) probable acyl-CoA dehydrogenase [Streptomyces coelicolor A3(2)]
                           506
                           23.12
                           32.41
                           189
                           244.0
     

     






      

          
GC ORFID: 49665How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4395719Stop: 4394394

          
Length: 1326


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4435 translation of PA4435Homolog Bit Score 208.0

          
Other Homologs:  t_PA4435 translation of PA4435 (BLASTP 208)

          
GC ORF Sequence

           
ATGATACCGAGAACCCTGTTCAGCTCCGACCACGAACTGTTTCGCGACAGCGTGCGCAAGTTCCTCGAACAG 
GAAGCCGTGCCTTTCCATCACCAATGGGAAAAGGATGGGCATGTCGACCGCGCGCTCTGGAACAAGGCCGGC 
GAGGCCGGAATGCTCTGTTCGCACCTGCCGGAAGAGTATGGCGGGATGGGCGCGGACTTCCTCTACAGCGCC 
GTGGTCATCGAAGAGATCGGTCGGGCCGGCCTGACCGGGATCGGTTTCTCCCTGCATTCGGACATCGCTGCG 
CCCTACATTCGGACATcgcTGCGCCATCGCTGCGCCCTACATCCTCCACTACGGCAGCGAGGCGCTGAAGCG 
CAAGTACCTGCCGAAGCTGGTATCCGGCGAGATGGTCGCGGCCATCGCCATGACCGAGCCGGGGGCCGGTTC 
CGACCTGCAAGGGGTGAAGACCACGGCGGTACTGGATGGCGACGAGTACGTCATCAATGGCTCGAAGACCTT 
CATCACCAACGGCTTCCTCGCCGACCTGGTGATCGTGGTGGCGAAGACCGATCCGAAGGCTGGCGCCAAGGG 
CATAAGCCTGTTCGTGGTCGAGGCGGGTACGCCGGGTTTCAGCAAGGGCAAGCGCCTGGAGAAGGTCGGGAT 
GAAGGCCCAGGACACCTCCGAGCTGTTCTTCCAGGATGTGCGGATTCCCCGGGAGAACCTGCTCGGCAAGGA 
CGGCCAGGGATTCATCTACCTGATGCAGGAGCTGCCGCAGGAGCGCCTGACCGTCGGTATCGGCGCGCTGGC 
GTCGGCCGAGGCGGCCCTGCAATGGACGCTCGACTACACTCGCGAGCGCAAGGCGTTCGGCAAGTCGGTGGC 
GGACTTCCAGAATACCCGCTTCAAGCTTGCCGAGATGGCTACCGAGATCCAGGTCGGCCGGGTCTTCGTCGA 
TCGCTGCATGGAGCTGCATCTCCAGGGCAAGCTGGACGTACCCACCGCCGCCATGTGCAAGTACTGGACGAC 
GGACCTGCAATGCAAGGTGCTCGACGAATGCGTGCAGTTGCACGGCGGCTACGGCTTCATGTGGGAATATCC 
GGTGGCGCGGGCCTGGGCCGATGCCCGGGTACAGCGGATCTACGCCGGTACCAACGAGATCATGAAGGAGAT 
CATCGCGCGGGCCCTGTGAGGCGCTCCTGGCCACCGGGAGGGGCGAACGAGCGCATTGCGCGGTTGTCCGCC 
GAACCCGCGGCAGCGCCAGGCCCCTGGAGCCTCAGGGAGCCGGGTTCGGTTGCTCCCGGTGGATCGCATCGA 
TACCGGCGAGCACCTCCTCGTCCAGCCTGA