ViewGene

Locus Name:
GeneID:
Location:

GeneID:6662
TrivialName: PA14_57620
AnnotatorUID: diggins
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57620
PAO1 Ortholog Locus:
Sequence Length:780
Protein Length:259
Start: 5131649
Stop: 5130870
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07823.1|AE004858_1 (AE004858) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 259/259 (100%), Positives = 259/259 (100%)
Sequence:
ATGGTCGCGGCCATCGCCATGACCGAGCCGGGGGCCGGTTCCGACCTGCAAGGGGTGAAGACCACGGCGGTA
CTGGATGGCGACGAGTACGTCATCAATGGCTCGAAGACCTTCATCACCAACGGCTTCCTCGCCGACCTGGTG
ATCGTGGTGGCGAAGACCGATCCGAAGGCTGGCGCCAAGGGCATAAGCCTGTTCGTGGTCGAGGCGGGTACG
CCGGGTTTCAGCAAGGGCAAGCGCCTGGAGAAGGTCGGGATGAAGGCCCAGGACACCTCCGAGCTGTTCTTC
CAGGATGTGCGGATTCCCCGGGAGAACCTGCTCGGCAAGGACGGCCAGGGATTCATCTACCTGATGCAGGAG
CTGCCGCAGGAGCGCCTGACCGTCGGTATCGGCGCGCTGGCGTCGGCCGAGGCGGCCCTGCAATGGACGCTC
GACTACACTCGCGAGCGCAAGGCGTTCGGCAAGTCGGTGGCGGACTTCCAGAATACCCGCTTCAAGCTTGCC
GAGATGGCTACCGAGATCCAGGTCGGCCGGGTCTTCGTCGATCGCTGCATGGAGCTGCATCTCCAGGGCAAG
CTGGACGTACCCACCGCCGCCATGTGCAAGTACTGGACGACGGACCTGCAATGCAAGGTGCTCGACGAATGC
GTGCAGTTGCACGGCGGCTACGGCTTCATGTGGGAATATCCGGTGGCGCGGGCCTGGGCCGATGCCCGGGTA
CAGCGGATCTACGCCGGTACCAACGAGATCATGAAGGAGATCATCGCGCGGGCCCTGTGA
Translation:
MVAAIAMTEPGAGSDLQGVKTTAVLDGDEYVINGSKTFITNGFLADLVIVVAKTDPKAGAKGISLFVVEAGT
PGFSKGKRLEKVGMKAQDTSELFFQDVRIPRENLLGKDGQGFIYLMQELPQERLTVGIGALASAEAALQWTL
DYTRERKAFGKSVADFQNTRFKLAEMATEIQVGRVFVDRCMELHLQGKLDVPTAAMCKYWTTDLQCKVLDEC
VQLHGGYGFMWEYPVARAWADARVQRIYAGTNEIMKEIIARAL*
AnnotationID:6663GeneID:6662
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 21:09:38
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG0141,COG1960
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN38724.1| (AF513500) putative acyl CoA dehydrogenase [Mycobacterium
           abscessus]
          Length = 431

 Score =  357 bits (917), Expect = 3e-98
 Identities = 175/260 (67%), Positives = 212/260 (81%), Gaps = 1/260 (0%)

>dbj|BAB52038.1| (AP003007) acyl-CoA dehydrogenase [Mesorhizobium loti]
          Length = 408

 Score =  343 bits (880), Expect = 6e-94
 Identities = 170/261 (65%), Positives = 208/261 (79%), Gaps = 2/261 (0%)

>gb|AAK22066.1| (AE005682) acyl-CoA dehydrogenase, long-chain specific [Caulobacter
           crescentus CB15]
          Length = 391

 Score =  328 bits (840), Expect = 2e-89
 Identities = 162/265 (61%), Positives = 204/265 (76%), Gaps = 6/265 (2%)
Structural Features:
KOG0141, Isovaleryl-CoA dehydrogenase 
[Amino acid transport and metabolism, Lipid transport and metabolism]

COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]
Genomic Context:
Comment:
possible frameshift with gene #6663
ReferenceID:13091
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30419
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31474
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:6662_cdd.html
URL:
Homologs By Global Alignment
Gene ID:6662

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
8012 PA4435_tr translation of PA4435 381 67.97 67.97 122 1332.0
201076 gb|AAG07823.1|AE004858_1 (AE004858) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1] 381 67.97 67.97 122 1332.0
201089 dbj|BAC45385.1| (AP005935) blr0120 [Bradyrhizobium japonicum USDA 110] 261 47.89 62.45 52 644.0
201083 gb|AAG04576.1|AE004549_3 (AE004549) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1] 380 41.84 52.63 122 809.0
8013 PA1187_tr translation of PA1187 380 41.84 52.63 122 809.0
GC ORFID: 49664How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 4395328Stop: 4394549
Length: 780
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4435 translation of PA4435Homolog Bit Score 517.0
Other Homologs: t_PA4435 translation of PA4435 (BLASTP 517), t_PA1187 translation of PA1187 (BLASTP 315), t_PA1535 translation of PA1535 (BLASTP 208), t_PA2552 translation of PA2552 (BLASTP 202), t_PA0746 translation of PA0746 (BLASTP 199), t_PA2889 translation of PA2889 (BLASTP 197), t_PA1631 translation of PA1631 (BLASTP 181), t_PA4979 translation of PA4979 (BLASTP 180)
GC ORF Sequence
ATGGTCGCGGCCATCGCCATGACCGAGCCGGGGGCCGGTTCCGACCTGCAAGGGGTGAAGACCACGGCGGTA
CTGGATGGCGACGAGTACGTCATCAATGGCTCGAAGACCTTCATCACCAACGGCTTCCTCGCCGACCTGGTG
ATCGTGGTGGCGAAGACCGATCCGAAGGCTGGCGCCAAGGGCATAAGCCTGTTCGTGGTCGAGGCGGGTACG
CCGGGTTTCAGCAAGGGCAAGCGCCTGGAGAAGGTCGGGATGAAGGCCCAGGACACCTCCGAGCTGTTCTTC
CAGGATGTGCGGATTCCCCGGGAGAACCTGCTCGGCAAGGACGGCCAGGGATTCATCTACCTGATGCAGGAG
CTGCCGCAGGAGCGCCTGACCGTCGGTATCGGCGCGCTGGCGTCGGCCGAGGCGGCCCTGCAATGGACGCTC
GACTACACTCGCGAGCGCAAGGCGTTCGGCAAGTCGGTGGCGGACTTCCAGAATACCCGCTTCAAGCTTGCC
GAGATGGCTACCGAGATCCAGGTCGGCCGGGTCTTCGTCGATCGCTGCATGGAGCTGCATCTCCAGGGCAAG
CTGGACGTACCCACCGCCGCCATGTGCAAGTACTGGACGACGGACCTGCAATGCAAGGTGCTCGACGAATGC
GTGCAGTTGCACGGCGGCTACGGCTTCATGTGGGAATATCCGGTGGCGCGGGCCTGGGCCGATGCCCGGGTA
CAGCGGATCTACGCCGGTACCAACGAGATCATGAAGGAGATCATCGCGCGGGCCCTGTGA