ViewGene
Locus Name:
GeneID:
Location:

GeneID:665
TrivialName: PA14_05870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05870
PAO1 Ortholog Locus:PA0450
Sequence Length:1623
Protein Length:540
Start: 520529
Stop: 518907
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03839.1|AE004482_6 (AE004482) probable phosphate transporter [Pseudomonas aeruginosa PAO1]
Identities = 537/540 (99%), Positives = 539/540 (99%)
Sequence:
ATGACCTCCGATGTCCTTCCCGCCGACGCCGTCGCCAGTGCCGCCGGCAACGCGCACAAGCCCCATCTCGAG
CAGCGTCCCGGCCGCCTCACCGCCCTCGTATTCTTCGCCGTGCTCGCCACCGGACTGCTGTTCAGCGCCTAC
AGCCTGATGCAGGACGTCGATGACGTCGGTTCCACGATCACCACCTGGACGCCCTTCCTGCTGCTCGGCGTG
GCCCTGCTGATCGCCCTCGGCTTCGAGTTCGTCAACGGCTTCCACGACACCGCCAACGCGGTGGCCACGGTG
ATCTACACCCACTCGCTGCCGCCGCACTTCGCGGTGGTCTGGTCGGGTTGCTTCAACTTTCTCGGCGTATTG
CTCTCCAGCGGCGCGGTGGCCTTCGGCATCATCGCCCTGCTGCCGGTGGAACTGATCCTGCAGGTCGGTTCC
TCGGCCGGCTTCGCCATGGTCTTCGCCCTGCTGATCGCCGCCATCCTGTGGAACCTCGGGACCTGGTGGCTG
GGCCTGCCGGCGTCGTCCTCGCACACCCTGATCGGCTCGATCATCGGCGTCGGCGTGGCCAACGCGCTGATG
CACGGGCGCGATGGCACCAGCGGGGTGGACTGGGGCCAGGCGACCAAGGTCGGCTACTCCCTGCTGCTCTCG
CCGCTGATCGGCTTCGCCTGCGCCGCCCTGTTGCTCCTGGCGCTGCGCCTGCTGGTGAAGAACCGCGCGCTG
TACAAGGCGCCGAAGGGCAAGGCGCCGCCGCCCTGGTGGATCCGCGGCCTGCTGATCCTGACCTGTACCGGA
GTGTCCTTCGCCCACGGCTCCAACGACGGACAAAAAGGCATGGGCCTGATCATGCTGATCCTGGTCGGCACC
CTGCCGATGGCCTACGCCCTGAACCGCACCATGCCGGCGGACCAGGCGGTGCAGTTCGCCGCCGTCGCCGAG
GTCACCCAGCAAGCGCTGGTGAAGAGCGCGCCGCAACCGGCGCCGGCCGATCCGCGCCAGGTACTCTCCGAC
TACGTGCGCAGCAAGCAGGCATCGCCTGAGCTGATCCCGGCGCTGGCCGCCCTGACCGGCTCGATCGGCCAG
GAAGTGAAAGGCTATGGCGCGTTCTCGCGGGTACCGGCGGAAGCCATGGGCAACGTGCGCAACGACATGTAC
CTGACCTCCGAGGCGATCCGCCTGATGGACAAGGACGGCGTCGGCCGCTTCGACGCCGACACCCGCGGCAAA
TTGCAGGCGTTCAAGCAGAAGATCGACGACGCCACCAAGTTCATCCCGCTATGGGTGAAGATCGCCGTGGCC
ATCGCCCTCGGCCTGGGCACCATGGTCGGCTGGAAACGCATCGTGGTGACGGTCGGCGAGAAGATCGGCAAG
ACCCACCTGACCTACGCCCAGGGCGCCTCGGCGGAAACCGTGGCGATGCTGACCATTGGCGCGGCGGACCTG
TATGGCTTGCCGGTCTCCACCACCCATGTGCTGTCTTCCGGGGTGGCCGGGACCATGGCGGCGAACGGTTCG
GGGCTACAGTGGAAGACCATCCGCAACCTGCTGATGGCCTGGGTGCTGACGCTGCCGGCGGCGATCCTGCTC
TCGGCCTCGCTCTACTGGCTGCTCACCCGGCTGTTCTGA
Translation:
MTSDVLPADAVASAAGNAHKPHLEQRPGRLTALVFFAVLATGLLFSAYSLMQDVDDVGSTITTWTPFLLLGV
ALLIALGFEFVNGFHDTANAVATVIYTHSLPPHFAVVWSGCFNFLGVLLSSGAVAFGIIALLPVELILQVGS
SAGFAMVFALLIAAILWNLGTWWLGLPASSSHTLIGSIIGVGVANALMHGRDGTSGVDWGQATKVGYSLLLS
PLIGFACAALLLLALRLLVKNRALYKAPKGKAPPPWWIRGLLILTCTGVSFAHGSNDGQKGMGLIMLILVGT
LPMAYALNRTMPADQAVQFAAVAEVTQQALVKSAPQPAPADPRQVLSDYVRSKQASPELIPALAALTGSIGQ
EVKGYGAFSRVPAEAMGNVRNDMYLTSEAIRLMDKDGVGRFDADTRGKLQAFKQKIDDATKFIPLWVKIAVA
IALGLGTMVGWKRIVVTVGEKIGKTHLTYAQGASAETVAMLTIGAADLYGLPVSTTHVLSSGVAGTMAANGS
GLQWKTIRNLLMAWVLTLPAAILLSASLYWLLTRLF*
AnnotationID:674GeneID:665
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 13:01:30
Gene Name:
Confidence Code:3
GeneProduct:putative phosphate transporter
Cell Localization:()
Synonyms:PA0450
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69687.1|AE016604_9 (AE016789) low-affinity inorganic phosphate transporter
           [Pseudomonas putida KT2440]
          Length = 538

 Score =  831 bits (2146), Expect = 0.0
 Identities = 415/521 (79%), Positives = 466/521 (89%)

>gb|AAO57171.1| (AE016869) phosphate transporter family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 484

 Score =  819 bits (2115), Expect = 0.0
 Identities = 403/484 (83%), Positives = 443/484 (91%)

>dbj|BAC48287.1| (AP005946) low-affinity inorganic phosphate transporter
           [Bradyrhizobium japonicum USDA 110]
          Length = 542

 Score =  724 bits (1868), Expect = 0.0
 Identities = 367/524 (70%), Positives = 425/524 (81%), Gaps = 1/524 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1333




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18475




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33772




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:665_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:665
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1120
                           PA0450_tr
                           translation of PA0450
                           540
                           99.44
                           99.81
                           0
                           2725.0
     

     
     
41910
                           gb|AAG03839.1|AE004482_6
                           (AE004482) probable phosphate transporter [Pseudomonas aeruginosa PAO1]
                           540
                           99.44
                           99.81
                           0
                           2725.0
     

     
     
41911
                           gb|AAN69687.1|AE016604_9
                           (AE016789) low-affinity inorganic phosphate transporter [Pseudomonas putida KT2440]
                           543
                           77.16
                           87.29
                           8
                           2148.0
     

     
     
41912
                           gb|AAO57171.1|
                           (AE016869) phosphate transporter family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           540
                           74.62
                           82.03
                           56
                           2115.0
     

     
     
41913
                           dbj|BAC48287.1|
                           (AP005946) low-affinity inorganic phosphate transporter [Bradyrhizobium japonicum USDA 110]
                           543
                           68.69
                           79.55
                           4
                           1871.0
     

     






      

          
GC ORFID: 43667How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0450Glimmer Score: 

          
Start: 6321871Stop: 6320249

          
Length: 1623


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0450 translation of PA0450Homolog Bit Score 1054.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene621 (ORF: BLASTX 860.0), psyr_15may02_Scaffold5_revised_gene6184 (ORF: BLASTX 416.0), t_PA4292 (ORF: BLASTX 407.0), t_PA0450 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCTCCGATGTCCTTCCCGCCGACGCCGTCGCCAGTGCCGCCGGCAACGCGCACAAGCCCCATCTCGAG 
CAGCGTCCCGGCCGCCTCACCGCCCTCGTATTCTTCGCCGTGCTCGCCACCGGACTGCTGTTCAGCGCCTAC 
AGCCTGATGCAGGACGTCGATGACGTCGGTTCCACGATCACCACCTGGACGCCCTTCCTGCTGCTCGGCGTG 
GCCCTGCTGATCGCCCTCGGCTTCGAGTTCGTCAACGGCTTCCACGACACCGCCAACGCGGTGGCCACGGTG 
ATCTACACCCACTCGCTGCCGCCGCACTTCGCGGTGGTCTGGTCGGGTTGCTTCAACTTTCTCGGCGTATTG 
CTCTCCAGCGGCGCGGTGGCCTTCGGCATCATCGCCCTGCTGCCGGTGGAACTGATCCTGCAGGTCGGTTCC 
TCGGCCGGCTTCGCCATGGTCTTCGCCCTGCTGATCGCCGCCATCCTGTGGAACCTCGGGACCTGGTGGCTG 
GGCCTGCCGGCGTCGTCCTCGCACACCCTGATCGGCTCGATCATCGGCGTCGGCGTGGCCAACGCGCTGATG 
CACGGGCGCGATGGCACCAGCGGGGTGGACTGGGGCCAGGCGACCAAGGTCGGCTACTCCCTGCTGCTCTCG 
CCGCTGATCGGCTTCGCCTGCGCCGCCCTGTTGCTCCTGGCGCTGCGCCTGCTGGTGAAGAACCGCGCGCTG 
TACAAGGCGCCGAAGGGCAAGGCGCCGCCGCCCTGGTGGATCCGCGGCCTGCTGATCCTGACCTGTACCGGA 
GTGTCCTTCGCCCACGGCTCCAACGACGGACAAAAAGGCATGGGCCTGATCATGCTGATCCTGGTCGGCACC 
CTGCCGATGGCCTACGCCCTGAACCGCACCATGCCGGCGGACCAGGCGGTGCAGTTCGCCGCCGTCGCCGAG 
GTCACCCAGCAAGCGCTGGTGAAGAGCGCGCCGCAACCGGCGCCGGCCGATCCGCGCCAGGTACTCTCCGAC 
TACGTGCGCAGCAAGCAGGCATCGCCTGAGCTGATCCCGGCGCTGGCCGCCCTGACCGGCTCGATCGGCCAG 
GAAGTGAAAGGCTATGGCGCGTTCTCGCGGGTACCGGCGGAAGCCATGGGCAACGTGCGCAACGACATGTAC 
CTGACCTCCGAGGCGATCCGCCTGATGGACAAGGACGGCGTCGGCCGCTTCGACGCCGACACCCGCGGCAAA 
TTGCAGGCGTTCAAGCAGAAGATCGACGACGCCACCAAGTTCATCCCGCTATGGGTGAAGATCGCCGTGGCC 
ATCGCCCTCGGCCTGGGCACCATGGTCGGCTGGAAACGCATCGTGGTGACGGTCGGCGAGAAGATCGGCAAG 
ACCCACCTGACCTACGCCCAGGGCGCCTCGGCGGAAACCGTGGCGATGCTGACCATTGGCGCGGCGGACCTG 
TATGGCTTGCCGGTCTCCACCACCCATGTGCTGTCTTCCGGGGTGGCCGGGACCATGGCGGCGAACGGTTCG 
GGGCTACAGTGGAAGACCATCCGCAACCTGCTGATGGCCTGGGTGCTGACGCTGCCGGCGGCGATCCTGCTC 
TCGGCCTCGCTCTACTGGCTGCTCACCCGGCTGTTCTGA