ViewGene
Locus Name:
GeneID:
Location:

GeneID:664
TrivialName: PA14_46370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46370
PAO1 Ortholog Locus:PA1396
Sequence Length:1623
Protein Length:540
Start: 4125450
Stop: 4127072
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04785.1|AE004569_3 (AE004569) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 537/540 (99%), Positives = 537/540 (99%)
Sequence:
ATGAAGTTCGAGAAGAATACCGAGCTGGACCAGGCCAACCTGCGACTGATCGTGGCCACCTGCGCGATTCTC
TACGTGGTGCTGATCGGCCTGCTGCCCGGCCTGAAGGTCGAGACCTACCTGCCGATCGTTGCCTACTACGGC
CTGTTCCTGATCGCCTCCATACTGCTGCGCCAGGCCATCGTGCGCTGGCCGGGGCACTACCCGGCGCGGCGG
ATCTTCTGCATGCTGCACGACTACGCCGGCACCTCGTTCGGCCTGATCGTGGGCGGCGAGGCGGCGCTGCCG
CTGTACGCGGTGATGGTCTGGATCAACCTGGGCAACGGCATGCGCTACGGCTCGCGCTACCTGGCCATCGCC
ACCGCCCTGGCGCTGCTCGCGCTACTGGTCATCTATCGCCTGACCCCGGCCTGGCAGGCTCAGCCGTTCATG
GTGCTGATGCTGATGACCACCAGCACCGTCATTCCCTTCTACGCGCACCTCCTGCTGGAGCGCACGCGCAAG
GCCACCGAGGAAGCGTTGCAGGCGAACCAGGAGAAATCGCGCCTGCTGGCCCAGGCCAGCCACGACCTGCGC
CAGCCGATCCACTCCATCGGCCTGTTCACCGCCTGCCTGCGCGACGCCCGCCTGGGCGACGAGGAACGGCGC
CTGGTGGACAACATCGACCGCTCGCTGCTCAACGTCTCGCAACTGTTCCGCTCCATCCTCGATCTCTACACC
CTCGACAACGGCCGGCTCCAGCCCAAGCAGGAGAACGTCCACCTGGGCGAGTTGCTGCGCGACCTGGTCCGG
CGCAACGCCGAGGCGGCGCGCTGGGCCGGGGTGGAGTTGCGCCTGCGCCCTTGCCGCCTGTGGACGCGAACC
GATCCGGGGCTGCTGTCGACCATGCTGCAGAACCTGCTCTCCAATAGCCTCAAGTACGCCGCCGAGCGCCCG
CTGCTGATCGGCGTGCGGCGGCGAGGCGACGGCCTGGCCGTAGCCATCTACGACCAGGGCCGGGGGATCGCG
GAGGAACACCTGCCGCGGGTGTTCGAGGAGTTCTACCGGGTACGCGAGACGCGCGACCGCGACGTCGAGGGA
ATCGGCCTGGGGCTGTCCATCGTCCGCCGCCTGGGGCAGTTGACCGGGATCGAGGTGACGCTGCGCTCGCGG
GTCGGACGCGGCACCGCGGTGACCCTGCACGGCCTGCCGGCAGTCGCCGCGCAAGCCCTGCCCCGCCGCGAC
GATCCCCTGCAGGCCGGCCTGCTCACCGGCTTGCGGGTGTGCCTGGTGGAAGATGATCGCAACGTCCTGCGC
GCCACCTCGGCGTTGCTCGAACGCTGGGGCTGCACGGTCCAGGCGGAAACCGAGGCGGACGGCTGGCGAACC
GATTGCGACATACTCGTCGTCGACTACGACCTCGGCCCCCACGCCTCCGGCGTCGAGTGCATCGAGCGGGTA
CGGCGGCAACGCGGAGAGGCGATACCGGCGCTGGTGATCAGCGGCCACGACATCGAGCGTATCCAGGCCAGC
GTCGAAGACACCGACATCGCCCTGCTCTCCAAGCCCGTGCGCCCCACGGAATTGCGCGCCACCCTGCGCGCC
CTGCGCGAGCGCCCGGAGGCCGCCAGCCACGCTTCCTGA
Translation:
MKFEKNTELDQANLRLIVATCAILYVVLIGLLPGLKVETYLPIVAYYGLFLIASILLRQAIVRWPGHYPARR
IFCMLHDYAGTSFGLIVGGEAALPLYAVMVWINLGNGMRYGSRYLAIATALALLALLVIYRLTPAWQAQPFM
VLMLMTTSTVIPFYAHLLLERTRKATEEALQANQEKSRLLAQASHDLRQPIHSIGLFTACLRDARLGDEERR
LVDNIDRSLLNVSQLFRSILDLYTLDNGRLQPKQENVHLGELLRDLVRRNAEAARWAGVELRLRPCRLWTRT
DPGLLSTMLQNLLSNSLKYAAERPLLIGVRRRGDGLAVAIYDQGRGIAEEHLPRVFEEFYRVRETRDRDVEG
IGLGLSIVRRLGQLTGIEVTLRSRVGRGTAVTLHGLPAVAAQALPRRDDPLQAGLLTGLRVCLVEDDRNVLR
ATSALLERWGCTVQAETEADGWRTDCDILVVDYDLGPHASGVECIERVRRQRGEAIPALVISGHDIERIQAS
VEDTDIALLSKPVRPTELRATLRALRERPEAASHAS*
AnnotationID:673GeneID:664
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 21:09:53
Gene Name:
Confidence Code:3
GeneProduct:putative two-component sensor
Cell Localization:()
Synonyms:PA1396
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative sensor histidine kinase/response regulator
Functional Category Confidence Code:5
COGs:COG0642
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54432.1| (AE016859) sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 537

 Score =  681 bits (1757), Expect = 0.0
 Identities = 330/532 (62%), Positives = 419/532 (78%)








 
Structural Features:
COG0642, BaeS, Signal transduction histidine kinase 
[Signal transduction mechanisms]
CD-Length = 336 residues,  97.3% aligned
Score =  127 bits (319), Expect = 3e-30
Identities = 94/334 (28%), Positives = 153/334 (45%), Gaps = 9/334 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1331




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18473




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37433




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:664_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:664
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1119
                           PA1396_tr
                           translation of PA1396
                           540
                           99.44
                           99.44
                           0
                           2725.0
     

     
     
41906
                           gb|AAG04785.1|AE004569_3
                           (AE004569) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           540
                           99.44
                           99.44
                           0
                           2725.0
     

     
     
41907
                           gb|AAC24343.3|
                           (AF029714) unknown [Pseudomonas putida]
                           542
                           68.08
                           80.99
                           4
                           1920.0
     

     
     
41908
                           gb|AAO54432.1|
                           (AE016859) sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000]
                           544
                           60.84
                           77.20
                           11
                           1752.0
     

     
     
41909
                           gb|AAO54430.1|
                           (AE016859) sensor histidine kinase/response regulator [Pseudomonas syringae pv. tomato str. DC3000]
                           551
                           46.82
                           62.61
                           11
                           1230.0
     

     






      

          
GC ORFID: 43666How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1396Glimmer Score: 

          
Start: 828459Stop: 826837

          
Length: 1623


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1396 translation of PA1396Homolog Bit Score 1054.0

          
Other Homologs:  t_PA1396 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGTTCGAGAAGAATACCGAGCTGGACCAGGCCAACCTGCGACTGATCGTGGCCACCTGCGCGATTCTC 
TACGTGGTGCTGATCGGCCTGCTGCCCGGCCTGAAGGTCGAGACCTACCTGCCGATCGTTGCCTACTACGGC 
CTGTTCCTGATCGCCTCCATACTGCTGCGCCAGGCCATCGTGCGCTGGCCGGGGCACTACCCGGCGCGGCGG 
ATCTTCTGCATGCTGCACGACTACGCCGGCACCTCGTTCGGCCTGATCGTGGGCGGCGAGGCGGCGCTGCCG 
CTGTACGCGGTGATGGTCTGGATCAACCTGGGCAACGGCATGCGCTACGGCTCGCGCTACCTGGCCATCGCC 
ACCGCCCTGGCGCTGCTCGCGCTACTGGTCATCTATCGCCTGACCCCGGCCTGGCAGGCTCAGCCGTTCATG 
GTGCTGATGCTGATGACCACCAGCACCGTCATTCCCTTCTACGCGCACCTCCTGCTGGAGCGCACGCGCAAG 
GCCACCGAGGAAGCGTTGCAGGCGAACCAGGAGAAATCGCGCCTGCTGGCCCAGGCCAGCCACGACCTGCGC 
CAGCCGATCCACTCCATCGGCCTGTTCACCGCCTGCCTGCGCGACGCCCGCCTGGGCGACGAGGAACGGCGC 
CTGGTGGACAACATCGACCGCTCGCTGCTCAACGTCTCGCAACTGTTCCGCTCCATCCTCGATCTCTACACC 
CTCGACAACGGCCGGCTCCAGCCCAAGCAGGAGAACGTCCACCTGGGCGAGTTGCTGCGCGACCTGGTCCGG 
CGCAACGCCGAGGCGGCGCGCTGGGCCGGGGTGGAGTTGCGCCTGCGCCCTTGCCGCCTGTGGACGCGAACC 
GATCCGGGGCTGCTGTCGACCATGCTGCAGAACCTGCTCTCCAATAGCCTCAAGTACGCCGCCGAGCGCCCG 
CTGCTGATCGGCGTGCGGCGGCGAGGCGACGGCCTGGCCGTAGCCATCTACGACCAGGGCCGGGGGATCGCG 
GAGGAACACCTGCCGCGGGTGTTCGAGGAGTTCTACCGGGTACGCGAGACGCGCGACCGCGACGTCGAGGGA 
ATCGGCCTGGGGCTGTCCATCGTCCGCCGCCTGGGGCAGTTGACCGGGATCGAGGTGACGCTGCGCTCGCGG 
GTCGGACGCGGCACCGCGGTGACCCTGCACGGCCTGCCGGCAGTCGCCGCGCAAGCCCTGCCCCGCCGCGAC 
GATCCCCTGCAGGCCGGCCTGCTCACCGGCTTGCGGGTGTGCCTGGTGGAAGATGATCGCAACGTCCTGCGC 
GCCACCTCGGCGTTGCTCGAACGCTGGGGCTGCACGGTCCAGGCGGAAACCGAGGCGGACGGCTGGCGAACC 
GATTGCGACATACTCGTCGTCGACTACGACCTCGGCCCCCACGCCTCCGGCGTCGAGTGCATCGAGCGGGTA 
CGGCGGCAACGCGGAGAGGCGATACCGGCGCTGGTGATCAGCGGCCACGACATCGAGCGTATCCAGGCCAGC 
GTCGAAGACACCGACATCGCCCTGCTCTCCAAGCCCGTGCGCCCCACGGAATTGCGCGCCACCCTGCGCGCC 
CTGCGCGAGCGCCCGGAGGCCGCCAGCCACGCTTCCTGA