ViewGene
Locus Name:
GeneID:
Location:

GeneID:662
TrivialName: PA14_24940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24940
PAO1 Ortholog Locus:PA3026
Sequence Length:1596
Protein Length:531
Start: 2178325
Stop: 2179920
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06414.1|AE004727_10 (AE004727) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 530/531 (99%), Positives = 530/531 (99%)
Sequence:
ATGCGTCGTTGGAATGGCTGGGGCGAAGAAAGCACCGTGGTCGAATTGCCGGACAGCGCCCGTGGGTTCCTG
GCGGAACTGGTCGGGCAGGGCGCACGCTTGCCGGACGCCAGCCTGGAGGCGGCGCTGGCGAAGGTCCCGGCA
TCGCGCCTGGAGGCCGATCCGCGCTACAGCATCGCCCCCCGTGAGCGTCTGCTGCATGCCCGCGGGCAGAGC
CTGCCGGACTGGCTGGCGATGCGCGAGGGCGACTTCGGCGTCTACCCGGACGCCGTGGCCTATCCGGAAACC
GCCGAGCAGATCCGCGAGTTGCTGGCCCTGGCCGACTCCCGCGACCTGCAACTGATTCCCTATGGCGGCGGT
ACTTCCGTGGCCGGCCATATCAATCCGCAAGCCTCGCGGCGGCCGGTACTGACGGTCTCGCTGGAGCGCATG
AACCGCCTGATCGATCTGGACCGCGAGAGCCTGGTCGCGACCTTCGGCCCCGGCGCCGCCGGCCCGCAGGTG
GAGAGCCAGTTGCGTGCGCTGGGCTACACGCTCGGGCATTTCCCGCAGTCCTGGGAGTTGTCGACCCTCGGT
GGCTGGGTCGCCAGCCGCTCCAGTGGCCAGCAGTCGCTGCGCTATGGGCGGATCGAACAACTTTTCGCCGGC
GGGACCCTGGAGACCTTCGCCGGGCCGCTTGAAATCGCTACCTTCCCGGCATCCGCGGCGGGACCGGACCTG
CGCGAACTGGTGCTGGGCTCTGAGGGACGCTTCGGGATCATTTCCTCGGTGAAGGTGCGGGTCTCGCCGCTG
GCCGAGGACGAGCGCTTCTACAGCGTCTTCCTGCCGAACTGGCAGCAGGCCCTGCAAGCCACCCGCGAGCTG
GCCCAGGCGCGCGTGCCGCTGTCGATGCTGCGCCTGTCCAACGCCGTGGAAACCATGACCCAGCTGGCCCTG
GCCGGCCATCCCGGACAGATCGCCTGGCTGGAGAAATACCTGGCACTGCGCGGCGCGGGCGAGGGCAAGTGC
ATGCTGACCTTCGGCGTGACCGGCAACCGTCGGCAGAACGGATTGTCGCTGAGCCAGGCGAAGGCCTTGCTG
AAACGCTTCGGCGGGGTCTTCACCGGCACCCTGCTGGGGCGCAAGTGGGCGCAGAACCGCTTCCGCTTCCCC
TACCTGCGCGAGGCCCTGTGGCAGGCGGGCTACGCCGTGGACACCCTGGAGACCGCCACCGACTGGAGCAAC
GTCGACGGCCTGCTGCAGAAGATCGAGGCCAGCCTGCGCGACGGCCTGGCCGCCGAGGGCGAGAAGGTCCAT
GTGTTCACCCACCTCTCGCATGTCTATGGCGAGGGGTCGAGCATCTATACCACCTACGTGTTCCGTCCTGCC
GCGAGCTATGCGGCGACGCTGGAGCGCTGGAAGCGTCTCAAGCATGCGGCCAGCCAGGCGATCGTCGACAAT
CGCGGCACCATCAGCCACCAGCATGGCGTTGGCAAGGACCACGCACCCTACCTGCCCCGCGAGAAGGGCGAA
CTGGGCGTCGCCGCGCTGCGTGCCATGGCCGGTCACTTCGACCCGGCCGGGCGGCTCAACCGCGGCACCCTG
CTGCAGGACTGA
Translation:
MRRWNGWGEESTVVELPDSARGFLAELVGQGARLPDASLEAALAKVPASRLEADPRYSIAPRERLLHARGQS
LPDWLAMREGDFGVYPDAVAYPETAEQIRELLALADSRDLQLIPYGGGTSVAGHINPQASRRPVLTVSLERM
NRLIDLDRESLVATFGPGAAGPQVESQLRALGYTLGHFPQSWELSTLGGWVASRSSGQQSLRYGRIEQLFAG
GTLETFAGPLEIATFPASAAGPDLRELVLGSEGRFGIISSVKVRVSPLAEDERFYSVFLPNWQQALQATREL
AQARVPLSMLRLSNAVETMTQLALAGHPGQIAWLEKYLALRGAGEGKCMLTFGVTGNRRQNGLSLSQAKALL
KRFGGVFTGTLLGRKWAQNRFRFPYLREALWQAGYAVDTLETATDWSNVDGLLQKIEASLRDGLAAEGEKVH
VFTHLSHVYGEGSSIYTTYVFRPAASYAATLERWKRLKHAASQAIVDNRGTISHQHGVGKDHAPYLPREKGE
LGVAALRAMAGHFDPAGRLNRGTLLQD*
AnnotationID:671GeneID:662
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 06:06:44
Gene Name:
Confidence Code:3
GeneProduct:putative oxidase
Cell Localization:()
Synonyms:PA3026
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0277
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0277, GlcD, FAD/FMN-containing dehydrogenases 
[Energy production and conversion]
CD-Length = 459 residues,  97.4% aligned
Score =  188 bits (477), Expect = 2e-48
Identities = 117/477 (24%), Positives = 187/477 (39%), Gaps = 33/477 (6%)








   
Genomic Context:






   
Comment:


















    ReferenceID:1327




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18469




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36022




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:662_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:662
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1117
                           PA3026_tr
                           translation of PA3026
                           531
                           99.81
                           99.81
                           0
                           2728.0
     

     
     
41895
                           gb|AAG06414.1|AE004727_10
                           (AE004727) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           531
                           99.81
                           99.81
                           0
                           2728.0
     

     
     
41896
                           emb|CAB61185.1|
                           (AL939106) putative flavoprotein [Streptomyces coelicolor A3(2)]
                           545
                           41.28
                           53.21
                           29
                           958.0
     

     






      

          
GC ORFID: 43664How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3026Glimmer Score: 

          
Start: 2775603Stop: 2774008

          
Length: 1596


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3026 translation of PA3026Homolog Bit Score 1055.0

          
Other Homologs:  t_PA3026 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTCGTTGGAATGGCTGGGGCGAAGAAAGCACCGTGGTCGAATTGCCGGACAGCGCCCGTGGGTTCCTG 
GCGGAACTGGTCGGGCAGGGCGCACGCTTGCCGGACGCCAGCCTGGAGGCGGCGCTGGCGAAGGTCCCGGCA 
TCGCGCCTGGAGGCCGATCCGCGCTACAGCATCGCCCCCCGTGAGCGTCTGCTGCATGCCCGCGGGCAGAGC 
CTGCCGGACTGGCTGGCGATGCGCGAGGGCGACTTCGGCGTCTACCCGGACGCCGTGGCCTATCCGGAAACC 
GCCGAGCAGATCCGCGAGTTGCTGGCCCTGGCCGACTCCCGCGACCTGCAACTGATTCCCTATGGCGGCGGT 
ACTTCCGTGGCCGGCCATATCAATCCGCAAGCCTCGCGGCGGCCGGTACTGACGGTCTCGCTGGAGCGCATG 
AACCGCCTGATCGATCTGGACCGCGAGAGCCTGGTCGCGACCTTCGGCCCCGGCGCCGCCGGCCCGCAGGTG 
GAGAGCCAGTTGCGTGCGCTGGGCTACACGCTCGGGCATTTCCCGCAGTCCTGGGAGTTGTCGACCCTCGGT 
GGCTGGGTCGCCAGCCGCTCCAGTGGCCAGCAGTCGCTGCGCTATGGGCGGATCGAACAACTTTTCGCCGGC 
GGGACCCTGGAGACCTTCGCCGGGCCGCTTGAAATCGCTACCTTCCCGGCATCCGCGGCGGGACCGGACCTG 
CGCGAACTGGTGCTGGGCTCTGAGGGACGCTTCGGGATCATTTCCTCGGTGAAGGTGCGGGTCTCGCCGCTG 
GCCGAGGACGAGCGCTTCTACAGCGTCTTCCTGCCGAACTGGCAGCAGGCCCTGCAAGCCACCCGCGAGCTG 
GCCCAGGCGCGCGTGCCGCTGTCGATGCTGCGCCTGTCCAACGCCGTGGAAACCATGACCCAGCTGGCCCTG 
GCCGGCCATCCCGGACAGATCGCCTGGCTGGAGAAATACCTGGCACTGCGCGGCGCGGGCGAGGGCAAGTGC 
ATGCTGACCTTCGGCGTGACCGGCAACCGTCGGCAGAACGGATTGTCGCTGAGCCAGGCGAAGGCCTTGCTG 
AAACGCTTCGGCGGGGTCTTCACCGGCACCCTGCTGGGGCGCAAGTGGGCGCAGAACCGCTTCCGCTTCCCC 
TACCTGCGCGAGGCCCTGTGGCAGGCGGGCTACGCCGTGGACACCCTGGAGACCGCCACCGACTGGAGCAAC 
GTCGACGGCCTGCTGCAGAAGATCGAGGCCAGCCTGCGCGACGGCCTGGCCGCCGAGGGCGAGAAGGTCCAT 
GTGTTCACCCACCTCTCGCATGTCTATGGCGAGGGGTCGAGCATCTATACCACCTACGTGTTCCGTCCTGCC 
GCGAGCTATGCGGCGACGCTGGAGCGCTGGAAGCGTCTCAAGCATGCGGCCAGCCAGGCGATCGTCGACAAT 
CGCGGCACCATCAGCCACCAGCATGGCGTTGGCAAGGACCACGCACCCTACCTGCCCCGCGAGAAGGGCGAA 
CTGGGCGTCGCCGCGCTGCGTGCCATGGCCGGTCACTTCGACCCGGCCGGGCGGCTCAACCGCGGCACCCTG 
CTGCAGGACTGA