ViewGene
Locus Name:
GeneID:
Location:

GeneID:6617
TrivialName: PA14_09070
AnnotatorUID: danlee
Modification Date/Time:2006-06-04 14:02:55
LocusName:PA14_09070
PAO1 Ortholog Locus:PA4242
Sequence Length:117
Protein Length:38
Start: 769724
Stop: 769840
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07630.1|AE004841_8 (AE004841) 50S ribosomal protein L36 [Pseudomonas aeruginosa PAO1]
Identities = 38/38 (100%), Positives = 38/38 (100%)
Sequence:
ATGAAAGTTCGTGCATCGGTCAAGAAGCTGTGCCGTAACTGCAAAATCATCCGTCGCGATGGCATCGTGCGG
GTGATCTGCAGCGCGGAACCGCGTCACAAGCAGCGCCAAGGCTGA
Translation:
MKVRASVKKLCRNCKIIRRDGIVRVICSAEPRHKQRQG*
AnnotationID:6618GeneID:6617
AnnotatorUID: danlee
Modification Date/Time: 2006-06-04 14:02:17
Gene Name:rpmJ
Confidence Code:2
GeneProduct:50S ribosomal subunit protein L36
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0257
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54189.1| (AE016858) ribosomal protein L36 [Pseudomonas syringae pv. tomato
          str. DC3000]
          Length = 38

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 36/38 (94%), Positives = 38/38 (100%)

>gb|AAN66105.1|AE016238_23 (AE016775) ribosomal protein L36 [Pseudomonas putida KT2440]
          Length = 38

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 36/38 (94%), Positives = 38/38 (100%)

>gb|AAP19382.1| (AE016992) 50S ribosomal subunit protein L36 [Shigella flexneri
          2a str. 2457T]
          Length = 38

 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 33/38 (86%), Positives = 38/38 (100%)






 
Structural Features:
COG0257, RpmJ, Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]
CD-Length = 38 residues, 100.0% aligned
Score = 43.7 bits (103), Expect = 4e-06
Identities = 28/38 (73%), Positives = 31/38 (81%)






   
Genomic Context:






   
Comment:


















    ReferenceID:13009




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30331




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36627




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6617_cdd.html


    		




 
URL:

















    ReferenceID:36710




  
Author/Investigator(s):
        Koivula T, Hemila H.





  
Title:
        Nucleotide sequence of a Lactococcus lactis gene cluster encoding adenylate kinase, initiation factor 1 and ribosomal proteins.




  
PubMed:
        1783905


MedLine:
        




    
Source:
J Gen Microbiol. 1991 Nov;137 ( Pt 11):2595-600.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1783905

















    ReferenceID:36713




  
Author/Investigator(s):
        Wada A, Sako T.





  
Title:
        Primary structures of and genes for new ribosomal proteins A and B in Escherichia coli.




  
PubMed:
        3298224


MedLine:
        




    
Source:
J Biochem (Tokyo). 1987 Mar;101(3):817-20.






    
Reference Type: 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3298224









      

          
GC ORFID: 49619How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4184215Stop: 4184099

          
Length: 117


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAAAGTTCGTGCATCGGTCAAGAAGCTGTGCCGTAACTGCAAAATCATCCGTCGCGATGGCATCGTGCGG 
GTGATCTGCAGCGCGGAACCGCGTCACAAGCAGCGCCAAGGCTGA