ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6590

TrivialName: PA14_10050

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_10050

PAO1 Ortholog Locus:

Sequence Length: 498

Protein Length: 165

Start: 864931

Stop: 864434

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAD33732.1| (AJ488511) hypothetical protein [Escherichia coli] Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 4/119 (3%)

Sequence:

ATGCTCCGTATTCCCCTTGCCCGACTGGCGCTTCCGTTCCTGTTCGCCAGCCTCTCGCCGTTCGCGGCGCAC
ACCGCCACAGCGGCCCCGGATACCAACGTCGAGACTGCCGTCACCCGGCAGTTGGAACGCTATGAACAGGCA
CTGAATGCCTCCGACGTCGACGCGGTGATGAAGCTCTATGCCCGCGACCCGGTGTTCATGCCGCAACACAGC
CTGCCCGCGGTAGGCCGCGAGGCGGTACGCGCGGCCTACCGGCAGGTGTTCGCGAAGATCCGCCTGGACATC
GACTTCAGCATCGACGAGATCCGTCCGCTGGGCCCGGACTGGGCCTTCGCCCGGACCCGCTCCAACGGCACG
GTGAAAGTGCTCGGCGTCGACGCTCCCGCAGGCGCCGAGGCCAACCAGGAGGTGTTCCTCCTGCACCGCGAA
AACGACGGCCAATGGCGCTTCGCGCGCTACATCTTCAGCACTACCAACCCTCCCCGGCAGCCCTGA

Translation:

MLRIPLARLALPFLFASLSPFAAHTATAAPDTNVETAVTRQLERYEQALNASDVDAVMKLYARDPVFMPQHS
LPAVGREAVRAAYRQVFAKIRLDIDFSIDEIRPLGPDWAFARTRSNGTVKVLGVDAPAGAEANQEVFLLHRE
NDGQWRFARYIFSTTNPPRQP*

AnnotationID:6591 GeneID:6590

AnnotatorUID: danlee

Modification Date/Time: 2005-10-19 15:03:32

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|46313119|ref|ZP_00213711.1|  COG4319: Ketosteroid isomerase homolog [Burkholderia cepacia R18194]
     Length=149
     Score =  152 bits (385),  Expect = 3e-36
     Identities = 78/140 (55%), Positives = 97/140 (69%), Gaps = 4/140 (2%)

Structural Features:

COG4319, Ketosteroid isomerase homolog [Function unknown].
             CD-Length = 137 residues,  84.7% aligned
             Score = 51.9 bits (124), Expect = 4e-08

Genomic Context:

Comment:

ReferenceID:12957

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17083

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6590_CDD.html

URL:

ReferenceID:30278

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

GC ORFID: `49592`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `4089006`	Stop: `4089503`
Length: `498`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCTCCGTATTCCCCTTGCCCGACTGGCGCTTCCGTTCCTGTTCGCCAGCCTCTCGCCGTTCGCGGCGCAC ACCGCCACAGCGGCCCCGGATACCAACGTCGAGACTGCCGTCACCCGGCAGTTGGAACGCTATGAACAGGCA CTGAATGCCTCCGACGTCGACGCGGTGATGAAGCTCTATGCCCGCGACCCGGTGTTCATGCCGCAACACAGC CTGCCCGCGGTAGGCCGCGAGGCGGTACGCGCGGCCTACCGGCAGGTGTTCGCGAAGATCCGCCTGGACATC GACTTCAGCATCGACGAGATCCGTCCGCTGGGCCCGGACTGGGCCTTCGCCCGGACCCGCTCCAACGGCACG GTGAAAGTGCTCGGCGTCGACGCTCCCGCAGGCGCCGAGGCCAACCAGGAGGTGTTCCTCCTGCACCGCGAA AACGACGGCCAATGGCGCTTCGCGCGCTACATCTTCAGCACTACCAACCCTCCCCGGCAGCCCTGA