ViewGene
Locus Name:
GeneID:
Location:

GeneID:659
TrivialName: PA14_24960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24960
PAO1 Ortholog Locus:PA3024
Sequence Length:1560
Protein Length:519
Start: 2181527
Stop: 2183086
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06412.1|AE004727_8 (AE004727) probable carbohydrate kinase [Pseudomonas aeruginosa PAO1]
Identities = 519/519 (100%), Positives = 519/519 (100%)
Sequence:
ATGAACGACAAGAACTATCTGCTGGCGATCGACAATGGCACCCAGAGCGTGCGCGCCCTGCTGTTCGACTTG
CAGGGCAACCTGCTGGGCAAGGGCAAGGTGGAGCTGGAGGCCTACTACTCGAAGCATCCGGGCTGGGCCGAA
CAGGACCCCGAGTACTACTGGGCGATGCTCGGCGAGGCCTGTCGGCGGCTCTGGGACCAGGTGGACATCGAT
CGCGGGCTCATCCGCGGGGTGTCGCTGACCACCCAGCGCGGTACGGTGATCCACGTCGATGCCGAGGGCAGG
CCGTTGCGGCCGGCGATCCTCTGGCTCGACCAGCGCCGGGCGGAGGTCCGCGAGCGCATCAGGGGGCCGTGG
GGCTGGCTGTTCAAGCTGGTCGGCGCCGAGGGCGCGGTGGAGCATTTCCGCGCCCAGGCCGAGGTCAACTGG
GTGGCCCAGGAGCAGCCGGAGATCGCCGCGAAGACCGACAAGGTGTTGCTGCTTTCCGGCTTTCTCAGCCAC
CGCCTGACCGGCCGTTTCGTCGACTCGGTGGGGTGCTGCGTTGCCTACCTGCCGTTCGACTACAAGCGCCTG
CGCTGGGCCGCGCCGCGCGACTGGAAATGGCAGGCGCTGGCGGTACGCCGCGAGCAGTTGCCGGAGCTGTTC
AAGCCGGGCGAGCGGCTCGGCGAGATCAGCGCCGAGGCCAGCCGGCACACCGGCATTCCGCAAGGCCTGCCG
TTGATCGCCGCGGGGGCCGACAAGGCCTGCGAGGTGCTCGGCGCAGGTGCGTTGGAGCCCACCATCGCCTGC
CTCTCCTACGGCACCACGGCGACCATCAACACCACTCGCGCCCGCTACCTGGAAACCGTGCCGCTGATTCCA
CCCTATCCGGCGGCGATTCCCGATCATTTCAATACCGAGGTGATGATCTATCGCGGCTACTGGATGGTCAGC
TGGTTCAAGCGCGAGTTCGGCTTGCGCGAGATGCAGCAGGCGCGCGAGCAGGGGGTCGAGCCGGAGCAACTG
TTCGACGAACTGGTCAACGGCGTGCCGCCCGGCTCGATGGGCCTGACCCTGCAACCCTACTGGTCGCCGGGA
ATCCGCGAACCGGGACTGGAGGCCAAGGGGGCGATGATCGGTTTCGGCGACGTGCATACCCGGGCACACATC
TACCGGGCCATCCTCGAGGGCCTGGCCTATGCCCTGCGCCAGGGCAAGGAGCGCATCGAGAAGCGTTCGGGC
ACGCCGATCGTGCGCCTGCGCGTGGCCGGCGGCGGCTCGCAGAGCGACGCGGCGATGCAGCTCACCGCCGAC
ATCTTCGGCCTGCCGGCCGAGCGCCCGCATGTCTACGAGGCGTCCGGCCTGGGTGCGGCGATCGACTGCGCG
GTGGGGCTCGGCCTCTATCCGGACGTCGCCAGCGCGGTGGCCGGGATGACCCGCGTCGGCCGGGTTTTCCTG
CCCCAGGCGGAAGCCCGGCAGATCTACCAGCGGCTCTATGGCGAGGTCTACCTGCGCATGTATCGCCAGTTG
CGCCCGCTCTACCGCAGCATTCGCGAGATTACCGGCTACCCTGCCTGA
Translation:
MNDKNYLLAIDNGTQSVRALLFDLQGNLLGKGKVELEAYYSKHPGWAEQDPEYYWAMLGEACRRLWDQVDID
RGLIRGVSLTTQRGTVIHVDAEGRPLRPAILWLDQRRAEVRERIRGPWGWLFKLVGAEGAVEHFRAQAEVNW
VAQEQPEIAAKTDKVLLLSGFLSHRLTGRFVDSVGCCVAYLPFDYKRLRWAAPRDWKWQALAVRREQLPELF
KPGERLGEISAEASRHTGIPQGLPLIAAGADKACEVLGAGALEPTIACLSYGTTATINTTRARYLETVPLIP
PYPAAIPDHFNTEVMIYRGYWMVSWFKREFGLREMQQAREQGVEPEQLFDELVNGVPPGSMGLTLQPYWSPG
IREPGLEAKGAMIGFGDVHTRAHIYRAILEGLAYALRQGKERIEKRSGTPIVRLRVAGGGSQSDAAMQLTAD
IFGLPAERPHVYEASGLGAAIDCAVGLGLYPDVASAVAGMTRVGRVFLPQAEARQIYQRLYGEVYLRMYRQL
RPLYRSIREITGYPA*
AnnotationID:668GeneID:659
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 20:08:37
Gene Name:
Confidence Code:3
GeneProduct:putative glycerol kinase
Cell Localization:()
Synonyms:PA3024
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1070,COG0554
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1070, XylB, Sugar (pentulose and hexulose) kinases 
[Carbohydrate transport and metabolism]
CD-Length = 502 residues,  99.8% aligned
Score =  368 bits (945), Expect = 1e-102
Identities = 175/517 (33%), Positives = 248/517 (47%), Gaps = 23/517 (4%)

COG0554, GlpK, Glycerol kinase [Energy production and conversion]
CD-Length = 499 residues,  97.2% aligned
Score =  210 bits (535), Expect = 4e-55
Identities = 149/518 (28%), Positives = 221/518 (42%), Gaps = 60/518 (11%)







   
Genomic Context:






   
Comment:


















    ReferenceID:1321




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18463




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36029




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:659_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:659
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1113
                           PA3024_tr
                           translation of PA3024
                           519
                           99.99
                           99.99
                           0
                           2738.0
     

     
     
41879
                           gb|AAG06412.1|AE004727_8
                           (AE004727) probable carbohydrate kinase [Pseudomonas aeruginosa PAO1]
                           519
                           99.99
                           99.99
                           0
                           2738.0
     

     






      

          
GC ORFID: 43661How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3024Glimmer Score: 

          
Start: 2772400Stop: 2770841

          
Length: 1560


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3024 translation of PA3024Homolog Bit Score 1059.0

          
Other Homologs:  t_PA3024 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGACAAGAACTATCTGCTGGCGATCGACAATGGCACCCAGAGCGTGCGCGCCCTGCTGTTCGACTTG 
CAGGGCAACCTGCTGGGCAAGGGCAAGGTGGAGCTGGAGGCCTACTACTCGAAGCATCCGGGCTGGGCCGAA 
CAGGACCCCGAGTACTACTGGGCGATGCTCGGCGAGGCCTGTCGGCGGCTCTGGGACCAGGTGGACATCGAT 
CGCGGGCTCATCCGCGGGGTGTCGCTGACCACCCAGCGCGGTACGGTGATCCACGTCGATGCCGAGGGCAGG 
CCGTTGCGGCCGGCGATCCTCTGGCTCGACCAGCGCCGGGCGGAGGTCCGCGAGCGCATCAGGGGGCCGTGG 
GGCTGGCTGTTCAAGCTGGTCGGCGCCGAGGGCGCGGTGGAGCATTTCCGCGCCCAGGCCGAGGTCAACTGG 
GTGGCCCAGGAGCAGCCGGAGATCGCCGCGAAGACCGACAAGGTGTTGCTGCTTTCCGGCTTTCTCAGCCAC 
CGCCTGACCGGCCGTTTCGTCGACTCGGTGGGGTGCTGCGTTGCCTACCTGCCGTTCGACTACAAGCGCCTG 
CGCTGGGCCGCGCCGCGCGACTGGAAATGGCAGGCGCTGGCGGTACGCCGCGAGCAGTTGCCGGAGCTGTTC 
AAGCCGGGCGAGCGGCTCGGCGAGATCAGCGCCGAGGCCAGCCGGCACACCGGCATTCCGCAAGGCCTGCCG 
TTGATCGCCGCGGGGGCCGACAAGGCCTGCGAGGTGCTCGGCGCAGGTGCGTTGGAGCCCACCATCGCCTGC 
CTCTCCTACGGCACCACGGCGACCATCAACACCACTCGCGCCCGCTACCTGGAAACCGTGCCGCTGATTCCA 
CCCTATCCGGCGGCGATTCCCGATCATTTCAATACCGAGGTGATGATCTATCGCGGCTACTGGATGGTCAGC 
TGGTTCAAGCGCGAGTTCGGCTTGCGCGAGATGCAGCAGGCGCGCGAGCAGGGGGTCGAGCCGGAGCAACTG 
TTCGACGAACTGGTCAACGGCGTGCCGCCCGGCTCGATGGGCCTGACCCTGCAACCCTACTGGTCGCCGGGA 
ATCCGCGAACCGGGACTGGAGGCCAAGGGGGCGATGATCGGTTTCGGCGACGTGCATACCCGGGCACACATC 
TACCGGGCCATCCTCGAGGGCCTGGCCTATGCCCTGCGCCAGGGCAAGGAGCGCATCGAGAAGCGTTCGGGC 
ACGCCGATCGTGCGCCTGCGCGTGGCCGGCGGCGGCTCGCAGAGCGACGCGGCGATGCAGCTCACCGCCGAC 
ATCTTCGGCCTGCCGGCCGAGCGCCCGCATGTCTACGAGGCGTCCGGCCTGGGTGCGGCGATCGACTGCGCG 
GTGGGGCTCGGCCTCTATCCGGACGTCGCCAGCGCGGTGGCCGGGATGACCCGCGTCGGCCGGGTTTTCCTG 
CCCCAGGCGGAAGCCCGGCAGATCTACCAGCGGCTCTATGGCGAGGTCTACCTGCGCATGTATCGCCAGTTG 
CGCCCGCTCTACCGCAGCATTCGCGAGATTACCGGCTACCCTGCCTGA