ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6588

TrivialName: PA14_10070

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_10070

PAO1 Ortholog Locus:

Sequence Length: 987

Protein Length: 328

Start: 865931

Stop: 864945

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAD64307.1| (AL935257) oxidoreductase [Lactobacillus plantarum WCFS1] Identities = 106/329 (32%), Positives = 167/329 (50%), Gaps = 15/329 (4%)

Sequence:

ATGAAAGCCTACGTCATCGAACAGCCTGGCGGCCCGGAAGTCCTGCGCCTGCACGACATCGCCTCGCCCGAA
CCGAACGCCAACGAAGTACGGATACGCGTGCGTGCCTTCGGCCTGAACCGCGCCGAACTCTACCGGCGCGCC
GGCAAGATGGGGCCGATCGCCGGGCCGGTGGTACCCGGTATCGAAGCGGTCGGCGAAGTCCTTCAGGACCCG
GCCGGGCAATTCCGGGTCGGCCAGCGGGTCGCCACCGCGATGGGCGGCATGCAGTTCAGCCGCAACGGCAGC
TACGCGGAAGAGGTCACGGTCCTGCGCAGCAATGTGGTGGCCTTGCCGGACAGCGAACTGTCCTGGGAAGAG
CTGGCGGCGCTGCCACAGGCCTACCTGACCGTATGGGGCGCCCTGGATCGCAGCCTGGCGATCCAGCCTGGG
CAGACCCTGCTGGTACGCGGCGCCACCTCTTCGGTCGGCCTGGCCGCCCTGACCTACGCCAAGGCACGCGGC
CTGCGGGTGCTAGCCAGTACCCGCAGCGCGGAGCACACGGCGCGCCTGCGGCAGTTGGGCGCCGACCAGGTG
TTCATCGACGACGGCGAACTCTGCGCGTCGATACTCGCGGCGGCGCCGGAAGGGGTGGACGCCGCGCTCGAG
GTGGTCGGCGCGCCAACCCTGCGCGACAGCGTCCGCTGCCTGCGCCCGTTCGGCTCGGTGTGCGTGATCGGT
CTGCTCGGCGGCCCGCCGTTGCTCGAACAGTTCCAGTTGATGCAGGACCTGCCCGGCGCGACCCGCCTGAGC
TTCTTCCCCAGCGGCCTGCTCGGAGGCGCGTACATGGACCTGGGCGAGTCGCCACTGGGCTGGGTGGTGCGG
GAACGGACCGCCGGCCGCCTGCCCTCTCTGCTCTCCGCCGCCTTCGACTTCGACGACCTGCCCCGCGCCCAC
AGCCTCATGGAGGCCAATCGCGCGTTCGGCAAGTTCGTCGTCCGTGTCTAG

Translation:

MKAYVIEQPGGPEVLRLHDIASPEPNANEVRIRVRAFGLNRAELYRRAGKMGPIAGPVVPGIEAVGEVLQDP
AGQFRVGQRVATAMGGMQFSRNGSYAEEVTVLRSNVVALPDSELSWEELAALPQAYLTVWGALDRSLAIQPG
QTLLVRGATSSVGLAALTYAKARGLRVLASTRSAEHTARLRQLGADQVFIDDGELCASILAAAPEGVDAALE
VVGAPTLRDSVRCLRPFGSVCVIGLLGGPPLLEQFQLMQDLPGATRLSFFPSGLLGGAYMDLGESPLGWVVR
ERTAGRLPSLLSAAFDFDDLPRAHSLMEANRAFGKFVVRV*

AnnotationID:6589 GeneID:6588

AnnotatorUID: danlee

Modification Date/Time: 2005-10-19 15:03:30

Gene Name:

Confidence Code: 3

GeneProduct: putative zinc-dependent oxidoreductase

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (20) Putative enzymes

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG0604,COG1064,pfam00107,KOG1198,KOG1197

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|46313118|ref|ZP_00213710.1|  COG0604: NADPH:quinone reductase and related Zn-dependent oxidoreductases
[Burkholderia cepacia R18194]
     Length=328
     Score =  418 bits (1074),  Expect = 1e-115
     Identities = 214/328 (65%), Positives = 256/328 (78%), Gaps = 0/328 (0%)

gi|66845721|gb|EAL86055.1|  oxidoreductase, putative [Aspergillus fumigatus Af293]
     Length=331
     Score =  206 bits (525),  Expect = 7e-52
     Identities = 135/332 (40%), Positives = 182/332 (54%), Gaps = 12/332 (3%)

Structural Features:

COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production
and conversion / General function prediction only].
             CD-Length = 326 residues, 100.0% aligned
             Score =  201 bits (512), Expect = 1e-52

pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase..
             CD-Length = 341 residues,  99.4% aligned
             Score =  149 bits (376), Expect = 7e-37

COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only].
             CD-Length = 339 residues,  97.9% aligned
             Score =  149 bits (378), Expect = 4e-37

Genomic Context:

Comment:

ReferenceID:12953

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17082

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6588_CDD.html

URL:

ReferenceID:30274

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

GC ORFID: `49590`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `4088006`	Stop: `4088992`
Length: `987`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGAAAGCCTACGTCATCGAACAGCCTGGCGGCCCGGAAGTCCTGCGCCTGCACGACATCGCCTCGCCCGAA CCGAACGCCAACGAAGTACGGATACGCGTGCGTGCCTTCGGCCTGAACCGCGCCGAACTCTACCGGCGCGCC GGCAAGATGGGGCCGATCGCCGGGCCGGTGGTACCCGGTATCGAAGCGGTCGGCGAAGTCCTTCAGGACCCG GCCGGGCAATTCCGGGTCGGCCAGCGGGTCGCCACCGCGATGGGCGGCATGCAGTTCAGCCGCAACGGCAGC TACGCGGAAGAGGTCACGGTCCTGCGCAGCAATGTGGTGGCCTTGCCGGACAGCGAACTGTCCTGGGAAGAG CTGGCGGCGCTGCCACAGGCCTACCTGACCGTATGGGGCGCCCTGGATCGCAGCCTGGCGATCCAGCCTGGG CAGACCCTGCTGGTACGCGGCGCCACCTCTTCGGTCGGCCTGGCCGCCCTGACCTACGCCAAGGCACGCGGC CTGCGGGTGCTAGCCAGTACCCGCAGCGCGGAGCACACGGCGCGCCTGCGGCAGTTGGGCGCCGACCAGGTG TTCATCGACGACGGCGAACTCTGCGCGTCGATACTCGCGGCGGCGCCGGAAGGGGTGGACGCCGCGCTCGAG GTGGTCGGCGCGCCAACCCTGCGCGACAGCGTCCGCTGCCTGCGCCCGTTCGGCTCGGTGTGCGTGATCGGT CTGCTCGGCGGCCCGCCGTTGCTCGAACAGTTCCAGTTGATGCAGGACCTGCCCGGCGCGACCCGCCTGAGC TTCTTCCCCAGCGGCCTGCTCGGAGGCGCGTACATGGACCTGGGCGAGTCGCCACTGGGCTGGGTGGTGCGG GAACGGACCGCCGGCCGCCTGCCCTCTCTGCTCTCCGCCGCCTTCGACTTCGACGACCTGCCCCGCGCCCAC AGCCTCATGGAGGCCAATCGCGCGTTCGGCAAGTTCGTCGTCCGTGTCTAG