ViewGene

Locus Name:
GeneID:
Location:

GeneID:6586
TrivialName: PA14_10090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10090
PAO1 Ortholog Locus:
Sequence Length:912
Protein Length:303
Start: 866440
Stop: 867351
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAB54034.1| (AP003012) transcriptional regulator [Mesorhizobium loti]
Identities = 98/292 (33%), Positives = 159/292 (54%), Gaps = 7/292 (2%)
Sequence:
ATGGACCTCAATGCGCTCCGTATGTTCGTCGGCGTCGTTCAGGCGGGCAGCCTGTCGGCTGCAGCCGCACGC
CTTGAGATACCGCTGCCGACGCTCAGCCGACGGGTCCGCGAGCTGGAGCACCAGCTCGCCGTGCAACTGCTC
GAGCGTTCGGTCCGCGGCACGCGGCTGACCGAGGCGGGCATGCGTCTCTACGAGAACGCCGCGCGCGGTGTC
GAGATACTGCACGAGGCGGAGCAGGCCCTGGCGTCGGACCAGGCGCGTCTGAAGGGACGCCTGCGGTTGTCG
TTGCCGCCCGGCTTCGAACCCTGGTGGGAGCTGCTGGGGGTGTTCCAGCGGCGCTATCCGGATATCCGCGTG
CAGGTGTTCACCTCCGAGCGGCGCATCGATCTCGTCGAGGATGGGGTCGACGTGGCCCTTCGGGTCGGCGCG
GTTGCCCATGAGGCGATGGTGGCGCGCCGCCTCTTCGCCTATCGCCACGTTCTGGTGGGTAGCCCGCGCCTG
CTTGAACGCGAGGGTGGAATGGAAACGCTGGACGACCTGCGCCGTTTCCCGGTCGGCATGTGGTACCCGGGC
GGCAGCGGCGAGGGCGCCTGGCTGCTCGGTGGCCAAGCGGTCAAGCCGCGGATCGTGCTGGCGACCAATGAC
TACGCGCATCTGCGTGCCCGCGCCCTGGATGCCGAACTGGTCACCGAGCTACCACCGTTCATGGCTGCCGCC
GCGGTGCGTGCGGGGCAACTGATCGAGTTGCTGCCTGAGCACCCCTTGCCGGAGCAGGAGATCCACTTGCTC
TATCCGTCGCACCGGCATCCGTCGACGATCGTCAGGTGCTACCTGGATTTCTGCCAGCAGCACCTGGACCTG
CTGCACGATGCCTGTCGGCTGGACGGCCCTGCGCCTGGCGCGGGGTAG
Translation:
MDLNALRMFVGVVQAGSLSAAAARLEIPLPTLSRRVRELEHQLAVQLLERSVRGTRLTEAGMRLYENAARGV
EILHEAEQALASDQARLKGRLRLSLPPGFEPWWELLGVFQRRYPDIRVQVFTSERRIDLVEDGVDVALRVGA
VAHEAMVARRLFAYRHVLVGSPRLLEREGGMETLDDLRRFPVGMWYPGGSGEGAWLLGGQAVKPRIVLATND
YAHLRARALDAELVTELPPFMAAAAVRAGQLIELLPEHPLPEQEIHLLYPSHRHPSTIVRCYLDFCQQHLDL
LHDACRLDGPAPGAG*
AnnotationID:6587GeneID:6586
AnnotatorUID: danlee
Modification Date/Time: 2005-10-19 16:04:14
Gene Name:
Confidence Code:3
GeneProduct:possible LysR family transcription regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|46313116|ref|ZP_00213708.1|  COG0583: Transcriptional regulator [Burkholderia cepacia R18194]
     Length=240
     Score =  273 bits (697),  Expect = 7e-72
     Identities = 130/229 (56%), Positives = 171/229 (74%), Gaps = 0/229 (0%)

gi|53729002|ref|ZP_00134372.2|  COG0583: Transcriptional regulator [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
     Length=295
     Score =  206 bits (523),  Expect = 1e-51
     Identities = 110/294 (37%), Positives = 161/294 (54%), Gaps = 0/294 (0%)
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription].
             CD-Length = 297 residues,  98.0% aligned
             Score = 99.3 bits (246), Expect = 5e-22

pfam03466, LysR_substrate, LysR substrate binding domain. The structure of this domain is known and is similar 
to the periplasmic binding proteins.
             CD-Length = 209 residues, 100.0% aligned
             Score = 70.4 bits (172), Expect = 3e-13

pfam00126, HTH_1, Bacterial regulatory helix-turn-helix protein, lysR family.
             CD-Length = 60 residues, 100.0% aligned
             Score = 62.8 bits (153), Expect = 5e-11
Genomic Context:
Comment:
ReferenceID:12949
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17077
Author/Investigator(s):
Title: CDD search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:6586_CDD.cgi
URL:
ReferenceID:30270
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6586

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
200109 emb|CAE37510.1| (BX640429) Putative LysR-family transcriptional regulator [Bordetella parapertussis] 341 30.79 43.10 80 279.0
200110 emb|CAE32104.1| (BX640441) Putative LysR-family transcriptional regulator [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 350 30.00 42.00 89 279.0
GC ORFID: 49588How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 4087497Stop: 4086586
Length: 912
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGACCTCAATGCGCTCCGTATGTTCGTCGGCGTCGTTCAGGCGGGCAGCCTGTCGGCTGCAGCCGCACGC
CTTGAGATACCGCTGCCGACGCTCAGCCGACGGGTCCGCGAGCTGGAGCACCAGCTCGCCGTGCAACTGCTC
GAGCGTTCGGTCCGCGGCACGCGGCTGACCGAGGCGGGCATGCGTCTCTACGAGAACGCCGCGCGCGGTGTC
GAGATACTGCACGAGGCGGAGCAGGCCCTGGCGTCGGACCAGGCGCGTCTGAAGGGACGCCTGCGGTTGTCG
TTGCCGCCCGGCTTCGAACCCTGGTGGGAGCTGCTGGGGGTGTTCCAGCGGCGCTATCCGGATATCCGCGTG
CAGGTGTTCACCTCCGAGCGGCGCATCGATCTCGTCGAGGATGGGGTCGACGTGGCCCTTCGGGTCGGCGCG
GTTGCCCATGAGGCGATGGTGGCGCGCCGCCTCTTCGCCTATCGCCACGTTCTGGTGGGTAGCCCGCGCCTG
CTTGAACGCGAGGGTGGAATGGAAACGCTGGACGACCTGCGCCGTTTCCCGGTCGGCATGTGGTACCCGGGC
GGCAGCGGCGAGGGCGCCTGGCTGCTCGGTGGCCAAGCGGTCAAGCCGCGGATCGTGCTGGCGACCAATGAC
TACGCGCATCTGCGTGCCCGCGCCCTGGATGCCGAACTGGTCACCGAGCTACCACCGTTCATGGCTGCCGCC
GCGGTGCGTGCGGGGCAACTGATCGAGTTGCTGCCTGAGCACCCCTTGCCGGAGCAGGAGATCCACTTGCTC
TATCCGTCGCACCGGCATCCGTCGACGATCGTCAGGTGCTACCTGGATTTCTGCCAGCAGCACCTGGACCTG
CTGCACGATGCCTGTCGGCTGGACGGCCCTGCGCCTGGCGCGGGGTAG