ViewGene
Locus Name:
GeneID:
Location:

GeneID:6583
TrivialName: PA14_10300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10300
PAO1 Ortholog Locus:
Sequence Length:612
Protein Length:203
Start: 888559
Stop: 889170
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO56011.1| (AE016864) efflux protein, LysE family [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 80/187 (42%), Positives = 114/187 (60%), Gaps = 1/187 (0%)
Sequence:
ATGCCGCTAGCCCTGCTGCTCGCCATGGGCGCGTTCTCCCTGAGCCTGTCGATTTCCCCCGGTCCGGTGAAC
CTGACCATCGTCGCTTCCGGCGCCAACCATGGTTTCCGCCGGACCCTGCCGTTCGTCACCGGCGCCACCCTC
GGCTTCGTCCTGCTGCTGGCCTTCGTCGGCTTCTGGTTCGTCCGCGCGATCGAGGCCTACCCGCGCTTCTTC
GACTACCTGGGGATGGCCGGCGCGGCGTTCATCGCTCATGTGGGCTACCGCATCGCCACCGCGGATCCACGC
CTGGCCCTGGAGGAAAACGGGGTCCCCGGGTTCTTCCAGGGCGTGCTCCTGCAATGGCTCAATCCCAAGGCC
TGGATCGCCTGCGCTTCCGGCGTGGCCTTGTTCGCCAGCCCGAGCACGCACGCGCCGCTGCTGGTCTTCATG
GCCATCTACCTGGTGGTCTGCTACCTCTCGCTGGCCGCCTGGGCGCTGCTCGGTGACCGCGTGGCGCTGCTG
CTCGACAGCCCCCGGCGGGTGCGCCTGTTCAATCGGGCGATGGGCGGCACCCTGGTGCTGACCGCCGGCTAC
ATGCTCTACCTGCAGCTCGCCGCTAGCCCGGATTGA
Translation:
MPLALLLAMGAFSLSLSISPGPVNLTIVASGANHGFRRTLPFVTGATLGFVLLLAFVGFWFVRAIEAYPRFF
DYLGMAGAAFIAHVGYRIATADPRLALEENGVPGFFQGVLLQWLNPKAWIACASGVALFASPSTHAPLLVFM
AIYLVVCYLSLAAWALLGDRVALLLDSPRRVRLFNRAMGGTLVLTAGYMLYLQLAASPD*
AnnotationID:6584GeneID:6583
AnnotatorUID: danlee
Modification Date/Time: 2006-05-03 13:01:12
Gene Name:
Confidence Code:3
GeneProduct:putative efflux protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1280,pfam01810
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84325282|ref|ZP_00973322.1|  COG1280: Putative threonine efflux protein [Pseudomonas aeruginosa 
2192]
Length=203

 Score =  403 bits (1036),  Expect = 2e-111
 Identities = 202/203 (99%), Positives = 203/203 (100%), Gaps = 0/203 (0%)

gi|84319057|ref|ZP_00967462.1|  COG1280: Putative threonine efflux protein [Pseudomonas aeruginosa 
C3719]
Length=203

 Score =  403 bits (1036),  Expect = 2e-111
 Identities = 202/203 (99%), Positives = 203/203 (100%), Gaps = 0/203 (0%)

gi|94414067|ref|ZP_01293933.1|  hypothetical protein PaerP_01004211 [Pseudomonas aeruginosa PA7]
Length=203

 Score =  380 bits (976),  Expect = 2e-104
 Identities = 189/202 (93%), Positives = 194/202 (96%), Gaps = 0/202 (0%)








 
Structural Features:
COG1280, RhtB, Putative threonine efflux protein 
[Amino acid transport and metabolism]
CD-Length = 208 residues, 100.0% aligned
Score = 84.2 bits (208), Expect = 1e-17
Identities = 60/208 (28%), Positives = 93/208 (44%), Gaps = 10/208 (4%)

pfam01810, LysE, LysE type translocator. 
CD-Length = 191 residues,  99.0% aligned
Score = 61.0 bits (148), Expect = 9e-11
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 9/190 (4%)






   
Genomic Context:






   
Comment:
ORF present but not annotated in PAO1.
Opposite PA4146.


















    ReferenceID:12944




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30265




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36872




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6583_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6583
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
200108
                           gb|AAO56011.1|
                           (AE016864) efflux protein, LysE family [Pseudomonas syringae pv. tomato str. DC3000]
                           204
                           39.70
                           56.37
                           17
                           388.0
     

     






      

          
GC ORFID: 49585How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4065378Stop: 4064767

          
Length: 612


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCCGCTAGCCCTGCTGCTCGCCATGGGCGCGTTCTCCCTGAGCCTGTCGATTTCCCCCGGTCCGGTGAAC 
CTGACCATCGTCGCTTCCGGCGCCAACCATGGTTTCCGCCGGACCCTGCCGTTCGTCACCGGCGCCACCCTC 
GGCTTCGTCCTGCTGCTGGCCTTCGTCGGCTTCTGGTTCGTCCGCGCGATCGAGGCCTACCCGCGCTTCTTC 
GACTACCTGGGGATGGCCGGCGCGGCGTTCATCGCTCATGTGGGCTACCGCATCGCCACCGCGGATCCACGC 
CTGGCCCTGGAGGAAAACGGGGTCCCCGGGTTCTTCCAGGGCGTGCTCCTGCAATGGCTCAATCCCAAGGCC 
TGGATCGCCTGCGCTTCCGGCGTGGCCTTGTTCGCCAGCCCGAGCACGCACGCGCCGCTGCTGGTCTTCATG 
GCCATCTACCTGGTGGTCTGCTACCTCTCGCTGGCCGCCTGGGCGCTGCTCGGTGACCGCGTGGCGCTGCTG 
CTCGACAGCCCCCGGCGGGTGCGCCTGTTCAATCGGGCGATGGGCGGCACCCTGGTGCTGACCGCCGGCTAC 
ATGCTCTACCTGCAGCTCGCCGCTAGCCCGGATTGA