ViewGene
Locus Name:
GeneID:
Location:

GeneID:6571
TrivialName: PA14_10840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10840
PAO1 Ortholog Locus:
Sequence Length:753
Protein Length:250
Start: 937983
Stop: 938735
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAL47555.1| (AY065999) putative keto-acyl reductase [Azotobacter vinelandii]
Identities = 179/250 (71%), Positives = 204/250 (81%)
Sequence:
ATGGATCTGCAACTCGCACAGCGCAGGGTGCTGGTTAGTGGCGGTTCGCGCGGTATCGGCCGCGCCATCGTC
GAACATTTTCTCGCCGAAGGGGCCGAGGTGGCCTTCTGCGCCCGTGGTGAGGCGGGCGTGGCCGAAGCAGCG
GATTGCTTCGGCGAGCGTGCCTTTGGCATGTCTGTGGACATCACCGACCCGCAGCAGGTGCGCGGTTGGGTA
ACGCGCTCGGCGCTGCACTTGGGCGGCATCGACATCGTTGTGCCCAACGTCAGCGCGCTGGCCGGTGGCGGA
GACCTGGACACCTGGCGGCGCGCTTTCGAGACCGACCTGCTGGGCAGCGTGGGCATGGTCGCTGCCGCCCTG
CCGTGGTTGAAACGCTCCGAGGCTGCCTCGGTGGTGCTGATCTCCAGTGTTTCCGGCCGCGAGGTGGACATG
TTCGCCGAGCCCTATGGCGTGCTCAAGGCGGCCCTGGTCCACTACGGGAAGACGCTTGCCAGCCGCCATGCG
GAGGACGGCATTCGGGTCAATACGGTGTCGCCGGGCAACGTCTATTTCGAAGATGGCGTATGGGGCGCGATC
GAACGGGATAGCCCGGAAACCTTCGCCCGTTGTCTCGCCGCCAATCCCATGGGGCGCATGGCGCGACCCGAC
GAGGTGGCGCGGGCGGTGCTGTTCCTGGCCAGCCCGGCGGCCAGCTTCACCACCGGAACCAACCTGCTGGTG
GACGGCGGGTTGACCCGGGGCGTGCAGTTCTGA
Translation:
MDLQLAQRRVLVSGGSRGIGRAIVEHFLAEGAEVAFCARGEAGVAEAADCFGERAFGMSVDITDPQQVRGWV
TRSALHLGGIDIVVPNVSALAGGGDLDTWRRAFETDLLGSVGMVAAALPWLKRSEAASVVLISSVSGREVDM
FAEPYGVLKAALVHYGKTLASRHAEDGIRVNTVSPGNVYFEDGVWGAIERDSPETFARCLAANPMGRMARPD
EVARAVLFLASPAASFTTGTNLLVDGGLTRGVQF*
AnnotationID:6572GeneID:6571
AnnotatorUID: danlee
Modification Date/Time: 2005-10-19 15:03:32
Gene Name:
Confidence Code:3
GeneProduct:putative dehydrogenase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00106, COG1028
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|67153864|ref|ZP_00415609.1|  Short-chain dehydrogenase/reductase SDR [Azotobacter vinelandii AvOP]
gi|67087997|gb|EAM07463.1|  Short-chain dehydrogenase/reductase SDR [Azotobacter vinelandii AvOP]
     Length=250
     Score =  358 bits (920),  Expect = 7e-98
     Identities = 181/250 (72%), Positives = 206/250 (82%), Gaps = 0/250 (0%)

gi|20384871|gb|AAL47555.1|  putative keto-acyl reductase [Azotobacter vinelandii]
     Length=250
     Score =  352 bits (904),  Expect = 5e-96
     Identities = 179/250 (71%), Positives = 204/250 (81%), Gaps = 0/250 (0%)






 
Structural Features:
pfam00106, adh_short, short chain dehydrogenase. This family contains a wide variety of dehydrogenases.
             CD-Length = 247 residues, 100.0% aligned
             Score =  152 bits (384), Expect = 5e-38

COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only].
             CD-Length = 251 residues, 100.0% aligned
             Score =  135 bits (341), Expect = 4e-33






   
Genomic Context:






   
Comment:


















    ReferenceID:12924




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17073




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6571_CDD.html


    		




 
URL:

















    ReferenceID:30241




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6571
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
200104
                           gb|AAL47555.1|
                           (AY065999) putative keto-acyl reductase [Azotobacter vinelandii]
                           250
                           71.60
                           81.60
                           0
                           904.0
     

     
     
200105
                           emb|CAE27858.1|
                           (BX572600) putative 3-ketoacyl-CoA reductase [Rhodopseudomonas palustris CGA009]
                           253
                           53.75
                           69.16
                           3
                           677.0
     

     
     
200107
                           gb|AAM35324.1|
                           (AE011670) 3-oxoacyl-[ACP] reductase [Xanthomonas axonopodis pv. citri str. 306]
                           254
                           41.73
                           58.66
                           6
                           487.0
     

     
     
200106
                           dbj|BAC48293.1|
                           (AP005946) bll3028 [Bradyrhizobium japonicum USDA 110]
                           290
                           40.68
                           54.13
                           41
                           551.0
     

     






      

          
GC ORFID: 49573How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 4015954Stop: 4015202

          
Length: 753


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGATCTGCAACTCGCACAGCGCAGGGTGCTGGTTAGTGGCGGTTCGCGCGGTATCGGCCGCGCCATCGTC 
GAACATTTTCTCGCCGAAGGGGCCGAGGTGGCCTTCTGCGCCCGTGGTGAGGCGGGCGTGGCCGAAGCAGCG 
GATTGCTTCGGCGAGCGTGCCTTTGGCATGTCTGTGGACATCACCGACCCGCAGCAGGTGCGCGGTTGGGTA 
ACGCGCTCGGCGCTGCACTTGGGCGGCATCGACATCGTTGTGCCCAACGTCAGCGCGCTGGCCGGTGGCGGA 
GACCTGGACACCTGGCGGCGCGCTTTCGAGACCGACCTGCTGGGCAGCGTGGGCATGGTCGCTGCCGCCCTG 
CCGTGGTTGAAACGCTCCGAGGCTGCCTCGGTGGTGCTGATCTCCAGTGTTTCCGGCCGCGAGGTGGACATG 
TTCGCCGAGCCCTATGGCGTGCTCAAGGCGGCCCTGGTCCACTACGGGAAGACGCTTGCCAGCCGCCATGCG 
GAGGACGGCATTCGGGTCAATACGGTGTCGCCGGGCAACGTCTATTTCGAAGATGGCGTATGGGGCGCGATC 
GAACGGGATAGCCCGGAAACCTTCGCCCGTTGTCTCGCCGCCAATCCCATGGGGCGCATGGCGCGACCCGAC 
GAGGTGGCGCGGGCGGTGCTGTTCCTGGCCAGCCCGGCGGCCAGCTTCACCACCGGAACCAACCTGCTGGTG 
GACGGCGGGTTGACCCGGGGCGTGCAGTTCTGA