ViewGene

Locus Name:
GeneID:
Location:

GeneID:657
TrivialName: PA14_68890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68890
PAO1 Ortholog Locus:PA5216
Sequence Length:1620
Protein Length:539
Start: 6146732
Stop: 6145113
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08601.1|AE004934_8 (AE004934) probable permease of ABC iron transporter [Pseudomonas aeruginosa PAO1]
Identities = 539/539 (100%), Positives = 539/539 (100%)
Sequence:
GTGGCCCATCCCGCTCCCCGCCGCTGGTACCCCATCACCTTCACCGTTGCCGCGCTGGTGCTGCTGCCGCTC
AGCGTGCTGCTGCTGAGCTGGCTGGAGATCGACCGGGAAATCTGGAGCCACCTGTGGGATACCCAGTTGCCG
CGCCTGCTCGGCAACACCCTGACCCTGGTGCTCGGCGTCGGCATCGGCGTGACTCTGCTCGGGGTCAGCCTG
GCCTGGCTCACCAGCCTCTGCGAATTCCCCGGGCGGCGCTGGCTGGACTGGGCGCTGATGTTGCCGTTCGCG
ATCCCGGCCTACGTCCTGGCGTTCGTCTTCGTCGGCCTGCTGGATTTCGCCGGACCGGTGCAGAGCCTGCTG
CGCGAGTGGTTCGGCAGCGGCCTGCGGTTGCCGCGCGTACGCTCCACCGGCGGGGTGATCCTGGTCCTGGTG
CTGGTGTTCTATCCCTATGTCTACCTGCTCGCGCGCAGCGCCTTCATCGCCCAGGGCAAGGGCCTGATGGAA
GCCGCGCGGGTCCTCGGCCTGTCGCCCTGGCAGGCGTTCCTGCGGGTCGCCCTGCCGATGGCGCGGCCGGCG
ATCGGCGCCGGCCTGGCGCTGGCGGTGATGGAAACCCTGGCCGACTTCGGCGCGGTATCGGTGTTCAACTTC
GATACCTTCACCACCGCTATCTACAAGACCTGGTACGGCTTCTACAGCCTCTCCAGCGCCGCCCAGCTGGCC
AGCCTGTTGTTGCTCGGGGTATGCCTGGTGCTGCTCGGCGAGCGCCACACGCGAGGCCGGGCCAAGGCCGCC
AGCGAGCGTCCGCGCGGCGCGCCGCTGTACCGCCTGCGCGGCGCCAGGGCGCTGGCGGCGAGCGCCTGGTGC
GGGCTGGTGTTCCTCTGCGCCTTCGTGATTCCCGTGGCGCAACTGGTTGTCTGGTTCTGGCGCCAGGGCCGT
TTCGACCTCGACGAGCGCTACTGGGACCTGATCGGCCATACCCTGACGCTGGGCGGCATCGCCGCACTGGCG
ACGGTCGCCGTGGCCCTGCTGCTGGCCTTCGCCGTGCGCCTGGCGCCGACCCGCGCTATCCGCGGCGCGGTG
GGCCTGGGCAACCTCGGTTATGCGCTGCCAGGCTCGGTCCTGGCGGTTTCGATCATGCTGGCCTTCAGTTGG
CTGGACAATCACTGGGTGATCCCGCTTTCCAGCGCCCTCGGCGGCGCCGGCAAGCCGCTGCTGCTGGGCAGT
CTGTTCGCCCTGCTGCTGGCCTACCTGATCCGTTTCATGGCGGTGGCCTACGGGCCGCTGGAAAGCGGGCTG
GCGCGGATCCGCCCGTCGCTGCCGGAAGCCTCGCGCAGCCTCGGCGTGGGCGGCCCGCTGCTGTTCCTGCGG
GTCTACCTGCCGCTGTTGCTGCCGGCCTCGCTGAGCGCCGCGCTGCTGGTCTTCGTCGACGTGCTCAAGGAG
ATGCCGGCGACCCTGCTGATGCGTCCCTTCGGTTGGGACACCCTGGCCGTACGGATCTTCGAGATGACCAGC
GAGGGCGAATGGGCGCGCGCCTCGCTGCCGGCCCTGACCCTGGTGCTGGTCGGCCTGCTACCGGTGGTCGGG
TTGATTCGTCGTTCTGCCCATCATTCCGATCGCTGA
Translation:
MAHPAPRRWYPITFTVAALVLLPLSVLLLSWLEIDREIWSHLWDTQLPRLLGNTLTLVLGVGIGVTLLGVSL
AWLTSLCEFPGRRWLDWALMLPFAIPAYVLAFVFVGLLDFAGPVQSLLREWFGSGLRLPRVRSTGGVILVLV
LVFYPYVYLLARSAFIAQGKGLMEAARVLGLSPWQAFLRVALPMARPAIGAGLALAVMETLADFGAVSVFNF
DTFTTAIYKTWYGFYSLSSAAQLASLLLLGVCLVLLGERHTRGRAKAASERPRGAPLYRLRGARALAASAWC
GLVFLCAFVIPVAQLVVWFWRQGRFDLDERYWDLIGHTLTLGGIAALATVAVALLLAFAVRLAPTRAIRGAV
GLGNLGYALPGSVLAVSIMLAFSWLDNHWVIPLSSALGGAGKPLLLGSLFALLLAYLIRFMAVAYGPLESGL
ARIRPSLPEASRSLGVGGPLLFLRVYLPLLLPASLSAALLVFVDVLKEMPATLLMRPFGWDTLAVRIFEMTS
EGEWARASLPALTLVLVGLLPVVGLIRRSAHHSDR*
AnnotationID:666GeneID:657
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 05:05:24
Gene Name:
Confidence Code:3
GeneProduct:putative iron ABC transporter, permease protein
Cell Localization:()
Synonyms:PA5216
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1178
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO53860.1| (AE016857) iron ABC transporter, permease protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 538

 Score =  863 bits (2230), Expect = 0.0
 Identities = 434/534 (81%), Positives = 479/534 (89%)

>gb|AAN70760.1|AE016720_3 (AE016793) iron ABC transporter, permease protein, putative
           [Pseudomonas putida KT2440]
          Length = 540

 Score =  845 bits (2184), Expect = 0.0
 Identities = 438/534 (82%), Positives = 470/534 (88%), Gaps = 1/534 (0%)

>emb|CAD84941.1| (BX321859) iron transport system permease protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 519

 Score =  503 bits (1294), Expect = e-141
 Identities = 271/521 (52%), Positives = 355/521 (68%), Gaps = 10/521 (1%)

Structural Features:
COG1178, ThiP, ABC-type Fe3+ transport system, permease component 
[Inorganic ion transport and metabolism]
CD-Length = 540 residues,  99.1% aligned
Score =  301 bits (773), Expect = 1e-82
Identities = 201/552 (36%), Positives = 271/552 (49%), Gaps = 30/552 (5%)
Genomic Context:
Comment:
ReferenceID:14189
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18459
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34847
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:657_cdd.html
URL:
Homologs By Global Alignment
Gene ID:657

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1110 PA5216_tr translation of PA5216 539 99.99 99.99 0 2744.0
41862 gb|AAG08601.1|AE004934_8 (AE004934) probable permease of ABC iron transporter [Pseudomonas aeruginosa PAO1] 539 99.81 99.99 0 2741.0
41864 gb|AAN70760.1|AE016720_3 (AE016793) iron ABC transporter, permease protein, putative [Pseudomonas putida KT2440] 542 80.99 87.08 5 2182.0
41863 gb|AAO53860.1| (AE016857) iron ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000] 539 80.33 88.86 1 2223.0
41865 emb|CAD84941.1| (BX321859) iron transport system permease protein [Nitrosomonas europaea ATCC 19718] 545 49.90 65.50 32 1304.0
GC ORFID: 43659How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5216Glimmer Score:
Start: 5410418Stop: 5408799
Length: 1620
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5216 translation of PA5216Homolog Bit Score 1061.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3166 (ORF: BLASTX 868.0), t_PA5216 (ORF: GLIMMER)
GC ORF Sequence
GTGGCCCATCCCGCTCCCCGCCGCTGGTACCCCATCACCTTCACCGTTGCCGCGCTGGTGCTGCTGCCGCTC
AGCGTGCTGCTGCTGAGCTGGCTGGAGATCGACCGGGAAATCTGGAGCCACCTGTGGGATACCCAGTTGCCG
CGCCTGCTCGGCAACACCCTGACCCTGGTGCTCGGCGTCGGCATCGGCGTGACTCTGCTCGGGGTCAGCCTG
GCCTGGCTCACCAGCCTCTGCGAATTCCCCGGGCGGCGCTGGCTGGACTGGGCGCTGATGTTGCCGTTCGCG
ATCCCGGCCTACGTCCTGGCGTTCGTCTTCGTCGGCCTGCTGGATTTCGCCGGACCGGTGCAGAGCCTGCTG
CGCGAGTGGTTCGGCAGCGGCCTGCGGTTGCCGCGCGTACGCTCCACCGGCGGGGTGATCCTGGTCCTGGTG
CTGGTGTTCTATCCCTATGTCTACCTGCTCGCGCGCAGCGCCTTCATCGCCCAGGGCAAGGGCCTGATGGAA
GCCGCGCGGGTCCTCGGCCTGTCGCCCTGGCAGGCGTTCCTGCGGGTCGCCCTGCCGATGGCGCGGCCGGCG
ATCGGCGCCGGCCTGGCGCTGGCGGTGATGGAAACCCTGGCCGACTTCGGCGCGGTATCGGTGTTCAACTTC
GATACCTTCACCACCGCTATCTACAAGACCTGGTACGGCTTCTACAGCCTCTCCAGCGCCGCCCAGCTGGCC
AGCCTGTTGTTGCTCGGGGTATGCCTGGTGCTGCTCGGCGAGCGCCACACGCGAGGCCGGGCCAAGGCCGCC
AGCGAGCGTCCGCGCGGCGCGCCGCTGTACCGCCTGCGCGGCGCCAGGGCGCTGGCGGCGAGCGCCTGGTGC
GGGCTGGTGTTCCTCTGCGCCTTCGTGATTCCCGTGGCGCAACTGGTTGTCTGGTTCTGGCGCCAGGGCCGT
TTCGACCTCGACGAGCGCTACTGGGACCTGATCGGCCATACCCTGACGCTGGGCGGCATCGCCGCACTGGCG
ACGGTCGCCGTGGCCCTGCTGCTGGCCTTCGCCGTGCGCCTGGCGCCGACCCGCGCTATCCGCGGCGCGGTG
GGCCTGGGCAACCTCGGTTATGCGCTGCCAGGCTCGGTCCTGGCGGTTTCGATCATGCTGGCCTTCAGTTGG
CTGGACAATCACTGGGTGATCCCGCTTTCCAGCGCCCTCGGCGGCGCCGGCAAGCCGCTGCTGCTGGGCAGT
CTGTTCGCCCTGCTGCTGGCCTACCTGATCCGTTTCATGGCGGTGGCCTACGGGCCGCTGGAAAGCGGGCTG
GCGCGGATCCGCCCGTCGCTGCCGGAAGCCTCGCGCAGCCTCGGCGTGGGCGGCCCGCTGCTGTTCCTGCGG
GTCTACCTGCCGCTGTTGCTGCCGGCCTCGCTGAGCGCCGCGCTGCTGGTCTTCGTCGACGTGCTCAAGGAG
ATGCCGGCGACCCTGCTGATGCGTCCCTTCGGTTGGGACACCCTGGCCGTACGGATCTTCGAGATGACCAGC
GAGGGCGAATGGGCGCGCGCCTCGCTGCCGGCCCTGACCCTGGTGCTGGTCGGCCTGCTACCGGTGGTCGGG
TTGATTCGTCGTTCTGCCCATCATTCCGATCGCTGA