ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6567

TrivialName: PA14_10960

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_10960

PAO1 Ortholog Locus:

Sequence Length: 1113

Protein Length: 370

Start: 948499

Stop: 947387

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAA19959.1| (AL939128) oxidoreductase alpha subunit [Streptomyces coelicolor A3(2)] Identities = 139/356 (39%), Positives = 194/356 (54%), Gaps = 11/356 (3%)

Sequence:

ATGAGCCTGCCCAACGCCAATCTCATCGCCAGTTCACGCAAGGCCGCCGCGCAGATGGCCACGCGCGACACG
TCGTTCATCTTCAACGAGTGGTACGTCGCCGCCTTCGCCGAGGAGGTCGGCCGCGAACTGCTCGCGCGCACT
CTGCTCGGCAAGCGCGTGGTGCTCTATCGCACCCTCGCCGGCCAGGCGGTAGCCCTGGAAGACCGCTGCGCG
CATCGCTCCTTCCCGCTATCGCGCAGTCGCCTGGAGGGGGACGGGATCGTCTGCGGCTATCACGGTTTCCGC
TACGACAGCCAGGGCGAGTTGATCGAGACACCGTCGCAGAAAGCCTGTCCGCGCGGCGTCGGCATCCGTCAC
TACCCGCTTCTGGAGCGCGGCCCGCTGGTCTGGATTTGGCTCGGCGACCCGCGACTGGCCGACCCGAAGCGA
CTGCCGCAGCGGCCCTGGCTGGAGGATCCGGGCTGGGCCTGCTCCAAGGGCTACTTCCTACACCCGGGCAAC
TACGTGAGCATGCACGAGAACCTGATGGACCTGACCCATCTCACCTACCTCCACGCCAATACCATCGGCACC
CCGGATTACGCCGGGGCGCCCTATGAGCTGGACCTGAAGGAAGGCCACTACCGGCTGGTACGGCACGTGCTG
CCGACCACCCTGTCGCCGGTCTGGGGCCGCACCACCGGCCTCGACGGCTGTCCCACGGCGGCGCGCATCACC
ACCTCGGAGTTTCTCTCGCCAGGCCTGCACCAGGTCAGCGCGACCTTCTACGACACAGCCCTGCCCGCCGAG
CGGCGACCGGAATTCCACATCCGCACGGCGCACATCCTCACCCCGGAGACCCACGGCAGCATGCACTACTTC
ATCGTCCACGGACGCGATTTCGCCCAGGACGACGAGACCGTCGGCGCTTTCATGCACGAGCAACTGTTCGCC
GCCTTCGTCGAGGACGTGGAAGGCCTCGGCGCGCTGGAAAAGGTACTCGCGGAGGCCGATGAGGATAGCTAC
GAGATCTCCGTTGCCAGCGACGCGCCGGCGGTGGCCACCCGCACCTACCTCAAGCGCCGCGCCGATGAGGAA
GCGCACCAGCGCGCGGCGCACCGGGTGGCCTGA

Translation:

MSLPNANLIASSRKAAAQMATRDTSFIFNEWYVAAFAEEVGRELLARTLLGKRVVLYRTLAGQAVALEDRCA
HRSFPLSRSRLEGDGIVCGYHGFRYDSQGELIETPSQKACPRGVGIRHYPLLERGPLVWIWLGDPRLADPKR
LPQRPWLEDPGWACSKGYFLHPGNYVSMHENLMDLTHLTYLHANTIGTPDYAGAPYELDLKEGHYRLVRHVL
PTTLSPVWGRTTGLDGCPTAARITTSEFLSPGLHQVSATFYDTALPAERRPEFHIRTAHILTPETHGSMHYF
IVHGRDFAQDDETVGAFMHEQLFAAFVEDVEGLGALEKVLAEADEDSYEISVASDAPAVATRTYLKRRADEE
AHQRAAHRVA*

AnnotationID:6568 GeneID:6567

AnnotatorUID: danlee

Modification Date/Time: 2005-10-19 14:02:07

Gene Name:

Confidence Code: 4

GeneProduct: possible ferridoxin oxidoreductase subunit

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (20) Putative enzymes

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|67676334|ref|ZP_00473084.1|  Rieske [2Fe-2S] region [Chromohalobacter salexigens DSM 3043]
gi|67519659|gb|EAM23611.1|  Rieske [2Fe-2S] region [Chromohalobacter salexigens DSM 3043]
     Length=370
     Score =  243 bits (620),  Expect = 8e-63
     Identities = 129/345 (37%), Positives = 186/345 (53%), Gaps = 4/345 (1%)

gi|21224976|ref|NP_630755.1|  oxidoreductase alpha subunit [Streptomyces coelicolor A3(2)]
gi|3334811|emb|CAA19959.1|  oxidoreductase alpha subunit [Streptomyces coelicolor A3(2)]
gi|7480310|pir||T35179  vanillate O-demethylase oxygenase (EC 1.14.-.-) chain A [similarity] 
     Length=359
     Score =  239 bits (609),  Expect = 1e-61
     Identities = 139/356 (39%), Positives = 194/356 (54%), Gaps = 11/356 (3%)

Structural Features:

COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, 
large terminal subunit [Inorganic ion transport and metabolism / General function prediction only].
             CD-Length = 367 residues, only  48.0% aligned
             Score =  118 bits (296), Expect = 1e-27

COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases 
[Inorganic ion transport and metabolism / General function prediction only].
             CD-Length = 106 residues,  96.2% aligned
             Score = 58.0 bits (140), Expect = 2e-09

pfam00355, Rieske, Rieske [2Fe-2S] domain. The rieske domain has a [2Fe-2S] centre. Two conserved 
cysteines that one Fe ion while the other Fe ion is coordinated by two 
conserved histidines.
             CD-Length = 99 residues,  99.0% aligned
             Score = 57.1 bits (137), Expect = 3e-09

Genomic Context:

Comment:

ReferenceID:12916

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17072

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6567_CDD.html

URL:

ReferenceID:30234

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

GC ORFID: `49569`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `4005438`	Stop: `4006550`
Length: `1113`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGAGCCTGCCCAACGCCAATCTCATCGCCAGTTCACGCAAGGCCGCCGCGCAGATGGCCACGCGCGACACG TCGTTCATCTTCAACGAGTGGTACGTCGCCGCCTTCGCCGAGGAGGTCGGCCGCGAACTGCTCGCGCGCACT CTGCTCGGCAAGCGCGTGGTGCTCTATCGCACCCTCGCCGGCCAGGCGGTAGCCCTGGAAGACCGCTGCGCG CATCGCTCCTTCCCGCTATCGCGCAGTCGCCTGGAGGGGGACGGGATCGTCTGCGGCTATCACGGTTTCCGC TACGACAGCCAGGGCGAGTTGATCGAGACACCGTCGCAGAAAGCCTGTCCGCGCGGCGTCGGCATCCGTCAC TACCCGCTTCTGGAGCGCGGCCCGCTGGTCTGGATTTGGCTCGGCGACCCGCGACTGGCCGACCCGAAGCGA CTGCCGCAGCGGCCCTGGCTGGAGGATCCGGGCTGGGCCTGCTCCAAGGGCTACTTCCTACACCCGGGCAAC TACGTGAGCATGCACGAGAACCTGATGGACCTGACCCATCTCACCTACCTCCACGCCAATACCATCGGCACC CCGGATTACGCCGGGGCGCCCTATGAGCTGGACCTGAAGGAAGGCCACTACCGGCTGGTACGGCACGTGCTG CCGACCACCCTGTCGCCGGTCTGGGGCCGCACCACCGGCCTCGACGGCTGTCCCACGGCGGCGCGCATCACC ACCTCGGAGTTTCTCTCGCCAGGCCTGCACCAGGTCAGCGCGACCTTCTACGACACAGCCCTGCCCGCCGAG CGGCGACCGGAATTCCACATCCGCACGGCGCACATCCTCACCCCGGAGACCCACGGCAGCATGCACTACTTC ATCGTCCACGGACGCGATTTCGCCCAGGACGACGAGACCGTCGGCGCTTTCATGCACGAGCAACTGTTCGCC GCCTTCGTCGAGGACGTGGAAGGCCTCGGCGCGCTGGAAAAGGTACTCGCGGAGGCCGATGAGGATAGCTAC GAGATCTCCGTTGCCAGCGACGCGCCGGCGGTGGCCACCCGCACCTACCTCAAGCGCCGCGCCGATGAGGAA GCGCACCAGCGCGCGGCGCACCGGGTGGCCTGA