ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6566

TrivialName: PA14_10980

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_10980

PAO1 Ortholog Locus:

Sequence Length: 855

Protein Length: 284

Start: 949604

Stop: 950458

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: dbj|BAC52282.1| (AP005960) transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Identities = 75/256 (29%), Positives = 114/256 (44%), Gaps = 29/256 (11%)

Sequence:

GTGTCGGTCGAGGCCTGGACAGGACCTGCCCTTCCTCACCCATTACAACAAGAACAACGATGCGTGCCCGCC
ACCATGATCAGCTTCTGGAATGCCCCGCCGGGGTCGCCGTCGGCGGACCTGCGCCCCTTCGTCGAGCTGGCC
TGCGCCTTGGGTGGCGAAGGCTTCCCCGCCGCTCTGCTGGAAACCCTTGGCCATTGGGTTGCCGCCCGTCAT
TTCAACGTGCTGCGCATCGGTGCACCGCGCCCCGAACTGCTCCTGGCCGGCACTCGCCATCGCGACGCGCAA
CTAGTGTGGCGCTGCTGGCAGGCCTATTCGCGGTACTACCACAGCCATGACCCGCTGTTCCTGCGCATGCAG
CGCCAGCGCCGCGGCCCGGTGCCGCTGCTGGGCCACCTGCTGGCCGAGGACATCGAGTTCGATGCTTACCGC
GAGGCGATCTATCGGGACAATGGCCTGAGCGAGCGGCTGTCGAGCCTGCATTGGGACGAGGAAGGCCGGCCG
CTGCTGTTCAATCTCTACCGGCACCGCGAGGACGGCTATTTCAGCGAGCGCGAGATCGCCGCCTTCGAGCAG
TGGGTGCCGGCCCTGCTGCAACTGCTGAGGGGGCACCTGGCCTTGCGCCGGGGACGCAGCGCGACCGACGAG
TGGCGGCTGGCGCTGTTGCACCGGGCGACGGACCTGACACCCCAGGAGCTGGCGGTCTGCCTGCACCTGCTG
CGCGGGTTGAGCCATGCCGGTATCGCCGCCGAGCTGGGGCTCAAGGAAAGCACGGTGAAAACCTACCGCAAC
CGCGCCTTTGCCCGCCTGGACATCCATTTTCGCAGCCAGCTTTTCGCCCTAGTGCAGGGCTGA

Translation:

MSVEAWTGPALPHPLQQEQRCVPATMISFWNAPPGSPSADLRPFVELACALGGEGFPAALLETLGHWVAARH
FNVLRIGAPRPELLLAGTRHRDAQLVWRCWQAYSRYYHSHDPLFLRMQRQRRGPVPLLGHLLAEDIEFDAYR
EAIYRDNGLSERLSSLHWDEEGRPLLFNLYRHREDGYFSEREIAAFEQWVPALLQLLRGHLALRRGRSATDE
WRLALLHRATDLTPQELAVCLHLLRGLSHAGIAAELGLKESTVKTYRNRAFARLDIHFRSQLFALVQG*

AnnotationID:6567 GeneID:6566

AnnotatorUID: danlee

Modification Date/Time: 2005-10-19 15:03:58

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|48780574|ref|ZP_00277281.1|  COG2771: DNA-binding HTH domain-containing proteins [Burkholderia fungorum LB400]
     Length=272
     Score = 93.6 bits (231),  Expect = 7e-18
     Identities = 80/261 (30%), Positives = 119/261 (45%), Gaps = 8/261 (3%)

gi|74015913|ref|ZP_00686540.1|  regulatory protein, LuxR [Burkholderia ambifaria AMMD]
gi|72611342|gb|EAO47287.1|  regulatory protein, LuxR [Burkholderia ambifaria AMMD]
     Length=269
     Score = 91.7 bits (226),  Expect = 3e-17
     Identities = 79/257 (30%), Positives = 115/257 (44%), Gaps = 8/257 (3%)

Structural Features:

smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon; lux regulon (activates the bioluminescence operon).
             CD-Length = 58 residues,  98.3% aligned
             Score = 55.9 bits (135), Expect = 5e-09

pfam00196, GerE, Bacterial regulatory proteins, luxR family.
             CD-Length = 58 residues,  94.8% aligned
             Score = 51.3 bits (123), Expect = 1e-07

COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription].
             CD-Length = 65 residues,  92.3% aligned
             Score = 46.9 bits (111), Expect = 3e-06

Genomic Context:

Comment:

ReferenceID:16333

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17069

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6566_CDD.html

URL:

ReferenceID:30232

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

GC ORFID: `49568`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `4004333`	Stop: `4003479`
Length: `855`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGTCGGTCGAGGCCTGGACAGGACCTGCCCTTCCTCACCCATTACAACAAGAACAACGATGCGTGCCCGCC ACCATGATCAGCTTCTGGAATGCCCCGCCGGGGTCGCCGTCGGCGGACCTGCGCCCCTTCGTCGAGCTGGCC TGCGCCTTGGGTGGCGAAGGCTTCCCCGCCGCTCTGCTGGAAACCCTTGGCCATTGGGTTGCCGCCCGTCAT TTCAACGTGCTGCGCATCGGTGCACCGCGCCCCGAACTGCTCCTGGCCGGCACTCGCCATCGCGACGCGCAA CTAGTGTGGCGCTGCTGGCAGGCCTATTCGCGGTACTACCACAGCCATGACCCGCTGTTCCTGCGCATGCAG CGCCAGCGCCGCGGCCCGGTGCCGCTGCTGGGCCACCTGCTGGCCGAGGACATCGAGTTCGATGCTTACCGC GAGGCGATCTATCGGGACAATGGCCTGAGCGAGCGGCTGTCGAGCCTGCATTGGGACGAGGAAGGCCGGCCG CTGCTGTTCAATCTCTACCGGCACCGCGAGGACGGCTATTTCAGCGAGCGCGAGATCGCCGCCTTCGAGCAG TGGGTGCCGGCCCTGCTGCAACTGCTGAGGGGGCACCTGGCCTTGCGCCGGGGACGCAGCGCGACCGACGAG TGGCGGCTGGCGCTGTTGCACCGGGCGACGGACCTGACACCCCAGGAGCTGGCGGTCTGCCTGCACCTGCTG CGCGGGTTGAGCCATGCCGGTATCGCCGCCGAGCTGGGGCTCAAGGAAAGCACGGTGAAAACCTACCGCAAC CGCGCCTTTGCCCGCCTGGACATCCATTTTCGCAGCCAGCTTTTCGCCCTAGTGCAGGGCTGA