ViewGene
Locus Name:
GeneID:
Location:

GeneID:656
TrivialName: PA14_13330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13330
PAO1 Ortholog Locus:PA3910
Sequence Length:1563
Protein Length:520
Start: 1144659
Stop: 1146221
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07297.1|AE004808_7 (AE004808) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 520/520 (100%), Positives = 520/520 (100%)
Sequence:
ATGAGTGGGATGGACCTCAAGCGCCGCCGCGTCGTGCAAGGCCTGGGCGCTGGACTGCTGTTGCCGGCGCTG
GGCGCGCCGGCGGTGATCGCCTCGCCCAGGGCGCGGCCGAAGCTGACCGATGGCGTGCAATCCGGCGATGTG
CAGGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGCCCGGCGCGGATGATCGTCGAATGGGACACCCGT
AGCGTCTTCAGCGAGCCGCGCCGGCTGGTCTCGCCGGTCACCGACGAGCGCCTCGACTACACCGCGCGCATC
GACCTGCGTGGCCTGCCAGCCGACCAGTCGATCTTCTACCGGGTGCGCTTCGAGGATGCCCGCGACGGCAGC
CTGAGCAAGCCCTGGTTCGGCCACCTGCGCAGTGCGCCGAGCGAGGCGCGCAATATCCGTTTCGTCTGGAGC
GGCGACACCTGCGGGCAAGGTTTCGGGATCAATCCGGATATCGGCGGCATGCGTATCTACGAAGCCATGCGC
CGGCGCCAGCCGGATTTCTTCCTGCACAGCGGCGATACCATCTATGCCGATGGGCCGATCCCCGAACGCATC
GAGACCGAGAGCGGGCGCATCTGGCGCAACCGGGTGACCGAGGCCAAGAGCAAGGTCGCCGAGACCCTCGAC
GAGTTCCGCGGCAACTACCGCTACAACCTGCTCGACGACAACCTGCGCCGCTTCAACGCCGAGGTGCCGCAG
ATCTGGCAATGGGACGACCACGAGACCACCAACAACTGGTCCTCCAGCAAGCAGCTCGACGAGCGCTACCAG
GTGAAGGACATCGACGTGCTGGCGGCCCGCGCGCGCCAGGCGTTCCTCGAATACGCGCCGCTGCGCTTCCAG
CGCCAGGGGCGCGACGGGCGGATCTACCGCAAGGTCGCCTACGGCCCTTTGCTCGACGTGTTCGTCCTCGAC
ATGCGCAGCTACCGCGGCGGCAACAGCGCCAACCTGCAGGCGCGGCGCAGCGCCGCCACCGATTTCCTCGGC
CGTGAACAGTTGCAATGGCTCAAGCGCGAGTTGCGCGGTTCGCGCGCGCAGTGGAAGGTGATCGCCGCCGAC
ATGCCGATCGGCCTCTGCGTGCCCGATGGCAAGGACGCCCAGGGCCGCGACCGCTGGGAGGCCATCGCCAAT
GGCAACGACGGTGCCGCCCTCGGTCGCGAGCTGGAGATCGCCGACCTGCTGCGCTTCGTCCAGCGCGCCGGG
GTGCGCAACACCGTCTGGCTGACCGCCGACGTGCATTACTGCGCAGCCCACCACTACAGCCCGGAGCGCGCC
GCGTTCAAGGACTTCGCGCCGTTCTGGGAGTTCGTCGCCGGGCCTCTCAATGCCGGTAGTTTCGGACCCAAC
GCGCTGGATGGCACGTTCGGCCCGCAGGTGATGTTCCAGAAGGCCCCGCTGGTCCAGAACAGCTCCCCCTTC
GCCGGCTACCAGTTCTTCGGCGAGGTGGAGATCGATGCGCAAAGCCGCGCGCTCACCGTCACCCTGCGCGAC
CTCGACGGCGAGCCGGTGTTTTCCCAGGAACTGCAGCCCGACGGCGCCTGA
Translation:
MSGMDLKRRRVVQGLGAGLLLPALGAPAVIASPRARPKLTDGVQSGDVQGDRALVWSRTDRPARMIVEWDTR
SVFSEPRRLVSPVTDERLDYTARIDLRGLPADQSIFYRVRFEDARDGSLSKPWFGHLRSAPSEARNIRFVWS
GDTCGQGFGINPDIGGMRIYEAMRRRQPDFFLHSGDTIYADGPIPERIETESGRIWRNRVTEAKSKVAETLD
EFRGNYRYNLLDDNLRRFNAEVPQIWQWDDHETTNNWSSSKQLDERYQVKDIDVLAARARQAFLEYAPLRFQ
RQGRDGRIYRKVAYGPLLDVFVLDMRSYRGGNSANLQARRSAATDFLGREQLQWLKRELRGSRAQWKVIAAD
MPIGLCVPDGKDAQGRDRWEAIANGNDGAALGRELEIADLLRFVQRAGVRNTVWLTADVHYCAAHHYSPERA
AFKDFAPFWEFVAGPLNAGSFGPNALDGTFGPQVMFQKAPLVQNSSPFAGYQFFGEVEIDAQSRALTVTLRD
LDGEPVFSQELQPDGA*
AnnotationID:665GeneID:656
AnnotatorUID: urbach
Modification Date/Time: 2004-03-10 18:06:38
Gene Name:
Confidence Code:3
GeneProduct:putative phosphatase or phosphodiesterase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3540,pfam00245
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1315




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17092




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:656_CDD.html


    		




 
URL:

















    ReferenceID:18457




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:656
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1109
                           PA3910_tr
                           translation of PA3910
                           520
                           99.99
                           99.99
                           0
                           2744.0
     

     
     
41850
                           gb|AAG07297.1|AE004808_7
                           (AE004808) hypothetical protein PA3910 [Pseudomonas aeruginosa PAO1]
                           520
                           99.99
                           99.99
                           0
                           2744.0
     

     
     
41851
                           gb|AAO57929.1|
                           (AE016872) Tat (twin-arginine translocation) pathway signal sequence domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           528
                           71.40
                           82.57
                           9
                           2036.0
     

     
     
41853
                           gb|AAM39002.1|
                           (AE012067) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           523
                           70.74
                           78.20
                           3
                           1934.0
     

     
     
41852
                           gb|AAM43263.1|
                           (AE012526) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           530
                           69.81
                           77.54
                           10
                           1946.0
     

     






      

          
GC ORFID: 43658How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3910Glimmer Score: 

          
Start: 3809279Stop: 3807717

          
Length: 1563


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3910 translation of PA3910Homolog Bit Score 1061.0

          
Other Homologs:  t_PA3910 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGGGATGGACCTCAAGCGCCGCCGCGTCGTGCAAGGCCTGGGCGCTGGACTGCTGTTGCCGGCGCTG 
GGCGCGCCGGCGGTGATCGCCTCGCCCAGGGCGCGGCCGAAGCTGACCGATGGCGTGCAATCCGGCGATGTG 
CAGGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGCCCGGCGCGGATGATCGTCGAATGGGACACCCGT 
AGCGTCTTCAGCGAGCCGCGCCGGCTGGTCTCGCCGGTCACCGACGAGCGCCTCGACTACACCGCGCGCATC 
GACCTGCGTGGCCTGCCAGCCGACCAGTCGATCTTCTACCGGGTGCGCTTCGAGGATGCCCGCGACGGCAGC 
CTGAGCAAGCCCTGGTTCGGCCACCTGCGCAGTGCGCCGAGCGAGGCGCGCAATATCCGTTTCGTCTGGAGC 
GGCGACACCTGCGGGCAAGGTTTCGGGATCAATCCGGATATCGGCGGCATGCGTATCTACGAAGCCATGCGC 
CGGCGCCAGCCGGATTTCTTCCTGCACAGCGGCGATACCATCTATGCCGATGGGCCGATCCCCGAACGCATC 
GAGACCGAGAGCGGGCGCATCTGGCGCAACCGGGTGACCGAGGCCAAGAGCAAGGTCGCCGAGACCCTCGAC 
GAGTTCCGCGGCAACTACCGCTACAACCTGCTCGACGACAACCTGCGCCGCTTCAACGCCGAGGTGCCGCAG 
ATCTGGCAATGGGACGACCACGAGACCACCAACAACTGGTCCTCCAGCAAGCAGCTCGACGAGCGCTACCAG 
GTGAAGGACATCGACGTGCTGGCGGCCCGCGCGCGCCAGGCGTTCCTCGAATACGCGCCGCTGCGCTTCCAG 
CGCCAGGGGCGCGACGGGCGGATCTACCGCAAGGTCGCCTACGGCCCTTTGCTCGACGTGTTCGTCCTCGAC 
ATGCGCAGCTACCGCGGCGGCAACAGCGCCAACCTGCAGGCGCGGCGCAGCGCCGCCACCGATTTCCTCGGC 
CGTGAACAGTTGCAATGGCTCAAGCGCGAGTTGCGCGGTTCGCGCGCGCAGTGGAAGGTGATCGCCGCCGAC 
ATGCCGATCGGCCTCTGCGTGCCCGATGGCAAGGACGCCCAGGGCCGCGACCGCTGGGAGGCCATCGCCAAT 
GGCAACGACGGTGCCGCCCTCGGTCGCGAGCTGGAGATCGCCGACCTGCTGCGCTTCGTCCAGCGCGCCGGG 
GTGCGCAACACCGTCTGGCTGACCGCCGACGTGCATTACTGCGCAGCCCACCACTACAGCCCGGAGCGCGCC 
GCGTTCAAGGACTTCGCGCCGTTCTGGGAGTTCGTCGCCGGGCCTCTCAATGCCGGTAGTTTCGGACCCAAC 
GCGCTGGATGGCACGTTCGGCCCGCAGGTGATGTTCCAGAAGGCCCCGCTGGTCCAGAACAGCTCCCCCTTC 
GCCGGCTACCAGTTCTTCGGCGAGGTGGAGATCGATGCGCAAAGCCGCGCGCTCACCGTCACCCTGCGCGAC 
CTCGACGGCGAGCCGGTGTTTTCCCAGGAACTGCAGCCCGACGGCGCCTGA