ViewGene
Locus Name:
GeneID:
Location:

GeneID:655
TrivialName: PA14_30050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30050
PAO1 Ortholog Locus:PA2634
Sequence Length:1596
Protein Length:531
Start: 2604153
Stop: 2602558
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06022.1|AE004692_1 (AE004692) probable isocitrate lyase [Pseudomonas aeruginosa PAO1]
Identities = 530/531 (99%), Positives = 531/531 (100%)
Sequence:
ATGTCCGCATATCAGAACGAGATCAAGGCAGTTGCCGCGCTGAAAGAGAAGAACGGCAGCAGCTGGAGCGCG
ATCAACCCCGAGTACGCAGCTCGCATGCGTATCCAGAACCGCTTCAAGACCGGCCTGGATATCGCCAAGTAC
ACCGCGGCCATCATGCGCAAGGACATGGCCGAATACGATGCGGACTCTTCCGTCTACACCCAGTCGCTGGGT
TGCTGGCACGGCTTCATCGGGCAGCAGAAGCTGATCTCGATCAAGAAGCACCTGAAGACCACCAACAAGCGC
TACCTCTACCTGTCCGGTTGGATGGTCGCCGCGCTGCGCTCCGACTTCGGCCCGCTGCCGGACCAGTCCATG
CACGAGAAAACCGCGGTTTCCGGCCTGATCGAAGAGCTGTACACCTTCCTGCGCCAGGCTGACGCCCGCGAG
TTGGACCTGCTGTTCACCGGCCTGGACGCTGCCCGCGCCGCTGGCGACAAGGCCAAGGAAGCCGAGCTGCTG
GCCCAGATCGACAACTTCGAAACCCACGTGGTGCCGATCATCGCCGACATCGACGCCGGCTTCGGCAACGCC
GAGGCGACCTACCTGCTGGCCAAGAAGATGATCGAAGCCGGCGCCTGCTGCATCCAGATCGAAAACCAGGTG
TCCGACGAGAAGCAGTGCGGCCACCAGGACGGCAAGGTCACCGTTCCGCACATCGACTTCCTCGCCAAGATC
AATGCCGTACGCTACGCCTTCCTCGAGCTGGGCGTGGACGATGGCGTGATCGTCGCCCGTACCGACTCCCTG
GGCGCCGGCCTGACCAAGCAGATCGCCGTGACCAACGAGCCGGGCGACCTGGGCGACCTGTACAACTCCTTC
CTGGATTGCGAAGAGATCTCCGAGGCCGAGCTGGGCAACGGCGACGTCGTGATCAAGCGCGAAGGCAAGCTG
CTGCGTCCGAAGCGCCTGGCTTCCAACCTGTTCCAGTTCCGCAAGGGCACCGGCGAAGATCGCTGCGTCCTG
GACTGCATCACCTCGCTGCAGAACGGCGCCGACCTGCTCTGGATCGAAACCGAGAAGCCGCACGTCGGCCAG
ATCAAGGCAATGGTCGATCGCATCCGCGAAGTGATTCCGAACGCCAAGCTGGTCTACAACAACAGCCCGTCC
TTCAACTGGACCCTGAACTTCCGCCAGCAGGTGTTCGATGCGTTCGTCGCCGAAGGCAAGGACGTTTCCGCC
TACGACCGCAACAAGCTGATGAGCGTCGAGTACGACGACACCGAGCTGGCCAAGGTCGCCGACGAGAAGATC
CGCACCTTCCAGCGCGATGGCTCGGCCCACGCCGGCATCTTCCACCACCTGATCACCCTGCCGACCTACCAC
ACCGCCGCGCTGTCCACCGACAACCTGGCCAAGGGCTACTTCGCCGACGAAGGCATGCTGGCCTACGTGAAG
GGCGTGCAGCGCCAGGAACTGCGCCAGGGCATCGCCTGCGTCAAGCACCAGAACATGGCGGGCTCCGACATC
GGCGACAACCATAAAGAGTACTTCGCAGGCGAAGCCGCTCTGAAGGCCAGCGGCAAAGACAACACCATGAAC
CAGTTCCACTAA
Translation:
MSAYQNEIKAVAALKEKNGSSWSAINPEYAARMRIQNRFKTGLDIAKYTAAIMRKDMAEYDADSSVYTQSLG
CWHGFIGQQKLISIKKHLKTTNKRYLYLSGWMVAALRSDFGPLPDQSMHEKTAVSGLIEELYTFLRQADARE
LDLLFTGLDAARAAGDKAKEAELLAQIDNFETHVVPIIADIDAGFGNAEATYLLAKKMIEAGACCIQIENQV
SDEKQCGHQDGKVTVPHIDFLAKINAVRYAFLELGVDDGVIVARTDSLGAGLTKQIAVTNEPGDLGDLYNSF
LDCEEISEAELGNGDVVIKREGKLLRPKRLASNLFQFRKGTGEDRCVLDCITSLQNGADLLWIETEKPHVGQ
IKAMVDRIREVIPNAKLVYNNSPSFNWTLNFRQQVFDAFVAEGKDVSAYDRNKLMSVEYDDTELAKVADEKI
RTFQRDGSAHAGIFHHLITLPTYHTAALSTDNLAKGYFADEGMLAYVKGVQRQELRQGIACVKHQNMAGSDI
GDNHKEYFAGEAALKASGKDNTMNQFH*
AnnotationID:664GeneID:655
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 11:11:21
Gene Name:
Confidence Code:3
GeneProduct:putative isocitrate lyase
Cell Localization:()
Synonyms:aceA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2224
Secondary Functional Category(ies):
EC Number:4.1.3.1
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM18124.1|AF499030_1 (AF499030) isocitrate lyase 2 [Ralstonia eutropha]
          Length = 526

 Score =  848 bits (2191), Expect = 0.0
 Identities = 421/530 (79%), Positives = 460/530 (86%), Gaps = 4/530 (0%)

>dbj|BAC47720.1| (AP005943) isocitrate lyase [Bradyrhizobium japonicum USDA 110]
          Length = 592

 Score =  816 bits (2107), Expect = 0.0
 Identities = 399/530 (75%), Positives = 452/530 (85%), Gaps = 2/530 (0%)

>dbj|BAB62107.1| (AB066287) isocitrate lyase [Colwellia maris]
          Length = 528

 Score =  778 bits (2009), Expect = 0.0
 Identities = 386/531 (72%), Positives = 448/531 (84%), Gaps = 5/531 (0%)






 
Structural Features:
COG2224, AceA, Isocitrate lyase [Energy production and conversion] 
CD-Length = 433 residues, 100.0% aligned
Score =  445 bits (1145), Expect = 9e-126
Identities = 131/536 (24%), Positives = 203/536 (37%), Gaps = 110/536 (20%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1313




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18455




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33216




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:655_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:655
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1108
                           PA2634_tr
                           translation of PA2634
                           531
                           99.81
                           99.99
                           0
                           2743.0
     

     
     
41842
                           gb|AAG06022.1|AE004692_1
                           (AE004692) probable isocitrate lyase [Pseudomonas aeruginosa PAO1]
                           531
                           99.81
                           99.99
                           0
                           2743.0
     

     
     
41843
                           gb|AAM18124.1|AF499030_1
                           (AF499030) isocitrate lyase 2 [Ralstonia eutropha]
                           531
                           79.28
                           86.62
                           5
                           2194.0
     

     
     
41844
                           emb|CAE29835.1|
                           (BX572607) isocitrate lyase [Rhodopseudomonas palustris CGA009]
                           545
                           73.94
                           84.77
                           15
                           2134.0
     

     
     
41846
                           dbj|BAB62107.1|
                           (AB066287) isocitrate lyase [Colwellia maris]
                           532
                           72.55
                           84.21
                           5
                           2015.0
     

     






      

          
GC ORFID: 43657How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2634Glimmer Score: 

          
Start: 2349773Stop: 2351368

          
Length: 1596


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2634 translation of PA2634Homolog Bit Score 1061.0

          
Other Homologs:  t_PA2634 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGCATATCAGAACGAGATCAAGGCAGTTGCCGCGCTGAAAGAGAAGAACGGCAGCAGCTGGAGCGCG 
ATCAACCCCGAGTACGCAGCTCGCATGCGTATCCAGAACCGCTTCAAGACCGGCCTGGATATCGCCAAGTAC 
ACCGCGGCCATCATGCGCAAGGACATGGCCGAATACGATGCGGACTCTTCCGTCTACACCCAGTCGCTGGGT 
TGCTGGCACGGCTTCATCGGGCAGCAGAAGCTGATCTCGATCAAGAAGCACCTGAAGACCACCAACAAGCGC 
TACCTCTACCTGTCCGGTTGGATGGTCGCCGCGCTGCGCTCCGACTTCGGCCCGCTGCCGGACCAGTCCATG 
CACGAGAAAACCGCGGTTTCCGGCCTGATCGAAGAGCTGTACACCTTCCTGCGCCAGGCTGACGCCCGCGAG 
TTGGACCTGCTGTTCACCGGCCTGGACGCTGCCCGCGCCGCTGGCGACAAGGCCAAGGAAGCCGAGCTGCTG 
GCCCAGATCGACAACTTCGAAACCCACGTGGTGCCGATCATCGCCGACATCGACGCCGGCTTCGGCAACGCC 
GAGGCGACCTACCTGCTGGCCAAGAAGATGATCGAAGCCGGCGCCTGCTGCATCCAGATCGAAAACCAGGTG 
TCCGACGAGAAGCAGTGCGGCCACCAGGACGGCAAGGTCACCGTTCCGCACATCGACTTCCTCGCCAAGATC 
AATGCCGTACGCTACGCCTTCCTCGAGCTGGGCGTGGACGATGGCGTGATCGTCGCCCGTACCGACTCCCTG 
GGCGCCGGCCTGACCAAGCAGATCGCCGTGACCAACGAGCCGGGCGACCTGGGCGACCTGTACAACTCCTTC 
CTGGATTGCGAAGAGATCTCCGAGGCCGAGCTGGGCAACGGCGACGTCGTGATCAAGCGCGAAGGCAAGCTG 
CTGCGTCCGAAGCGCCTGGCTTCCAACCTGTTCCAGTTCCGCAAGGGCACCGGCGAAGATCGCTGCGTCCTG 
GACTGCATCACCTCGCTGCAGAACGGCGCCGACCTGCTCTGGATCGAAACCGAGAAGCCGCACGTCGGCCAG 
ATCAAGGCAATGGTCGATCGCATCCGCGAAGTGATTCCGAACGCCAAGCTGGTCTACAACAACAGCCCGTCC 
TTCAACTGGACCCTGAACTTCCGCCAGCAGGTGTTCGATGCGTTCGTCGCCGAAGGCAAGGACGTTTCCGCC 
TACGACCGCAACAAGCTGATGAGCGTCGAGTACGACGACACCGAGCTGGCCAAGGTCGCCGACGAGAAGATC 
CGCACCTTCCAGCGCGATGGCTCGGCCCACGCCGGCATCTTCCACCACCTGATCACCCTGCCGACCTACCAC 
ACCGCCGCGCTGTCCACCGACAACCTGGCCAAGGGCTACTTCGCCGACGAAGGCATGCTGGCCTACGTGAAG 
GGCGTGCAGCGCCAGGAACTGCGCCAGGGCATCGCCTGCGTCAAGCACCAGAACATGGCGGGCTCCGACATC 
GGCGACAACCATAAAGAGTACTTCGCAGGCGAAGCCGCTCTGAAGGCCAGCGGCAAAGACAACACCATGAAC 
CAGTTCCACTAA