ViewGene
Locus Name:
GeneID:
Location:

GeneID:654
TrivialName: PA14_37100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37100
PAO1 Ortholog Locus:PA2124
Sequence Length:1638
Protein Length:545
Start: 3307187
Stop: 3305550
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05512.1|AE004640_1 (AE004640) probable dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 540/545 (99%), Positives = 541/545 (99%)
Sequence:
ATGCACCAACCCGAAAACCCGGCGCGCCGCACCTTGCTGGCGCAGACCGTCGCCGGCTCCGCCGCGCTCGCC
CTGGGCTCGCTGCTCGGCGGCGCGCCCGGCGTGGCCAGCGCCACGGCGGAAACGCCCCGCAAGGCCTTCGAT
GGCGGCAGGATCGATGTGCTGATCGTCGGCGGCGGCTCCGCCGGCGCGGTCCTCGCCCGGCGCCTGAGCGAG
CGCGGCGACCGCCGGGTACTGTTGCTGGAAGCCGGCCAGGCCTATCCGGCCTGGGACTACCCCAGGATCATC
GCCAGCAGCGACAGCGTCGGCGGCGACCCCGCCAGCGACTGGGGCTACCAGTCCCAACCGGGGGCGATCGGG
CATCCGATCCATGCGATCCGCGGCAAGGTCCTCGGCGGCAGCTCGGCGATCAACGGCGCGGTGGCGATCCGC
GCGCGGCGCGAAGACTTCGCCCGCTGGAACCTGCCGGGCTGGTCCTACGACGACCTGCTGCCGGCGTTCCGC
CGCCTGGAGACCCGCCAGGGCGGCGACCCGGCCCTGCACGGCGGGGACGGACCGCTGCCGGTGCGGCAACTG
AGCCGCGCCGATCTCTCGCCGATGCAGAGGGCCTTCGTCGACGCCACCCTGGCCAACGGTTTCAAGGCCATC
GTCGATTTCGACGGCGCCGACGCCAACGGCGTCGGGCCGTACCCGATGAATGTCGTCAACGGTGTGCGCGTC
AACACCGGCATGGCCTATCTCGACAACGCCGTGCGCGGCCGCGCCAACCTGTCGATCCGCGGCGACGCGCTG
GTCGACCGGGTGCTCTTCGAAGGTAAGCGCGCGGTGGGCGTGCGCCTGGCCTCCGGCGAGGAAATCCACGCC
GGCGAAGTGATCCTCAGCGCCGGCGCCTACGGCAGCCCGGCGATCCTGCTGCGCTCCGGTGTCGGCCCGGCC
GACGAGCTGAAGGCGCTGTCGATCCCGTTGCTTGCCGACTTGCCGGTGGGCCGCCGGCTCAAGGACCATCCG
TTCTACTACAACGCCTATGCCGCCCGGCCGGAGCGCATCGGCGCGCAGTCGCCGGTGATCGGCGCCAAGCTC
TGGACCCATAGCTCGCGGGCGCAGAACGGCGAGCTGGACCTGCACATCACCGCCACCCACCTGTTCCCCGCC
GAGATGAGCCCGACCGGGGTCGGCTTCGTCCTCGCCGTGGCCCTGACCCGGCCGCAATCGCTGGGCAGTGTG
CGCCTGGCCAGCCGCGACCCGGCCGTCGCGCCGCTGATCGACCTGAACTTCCTCGCCGAGGCCGAAGACCGC
GCGCGGTTGCTGGAAGGGGTCAAGCTGGCGCGCCGGATCGGCCGCAGCGAACCGCTCGCCGGGCTGATCCAC
GCCGAACTCGGACCAGGGCCCGAGGCACGCAGCGATGCGCAGATCGAAGCGGCGATCCGCGCCACCCTCGAT
ACCTACCACCACCCGACCTCCAGCGCGCCGATGGGCCGCGCCGGCGAGCGCTGGGCGGTGGTCGACCTGGAG
GGCAGGGTGCATGGCCTGCAAGGATTGCGGGTGATCGACGCCTCGATCTTCCCCGATGCCATTTCGGTGGCC
ACCAACATCACCACCATCGCCGTTGCCGAGCACCTCGCGCAGCACATCGCCTGA
Translation:
MHQPENPARRTLLAQTVAGSAALALGSLLGGAPGVASATAETPRKAFDGGRIDVLIVGGGSAGAVLARRLSE
RGDRRVLLLEAGQAYPAWDYPRIIASSDSVGGDPASDWGYQSQPGAIGHPIHAIRGKVLGGSSAINGAVAIR
ARREDFARWNLPGWSYDDLLPAFRRLETRQGGDPALHGGDGPLPVRQLSRADLSPMQRAFVDATLANGFKAI
VDFDGADANGVGPYPMNVVNGVRVNTGMAYLDNAVRGRANLSIRGDALVDRVLFEGKRAVGVRLASGEEIHA
GEVILSAGAYGSPAILLRSGVGPADELKALSIPLLADLPVGRRLKDHPFYYNAYAARPERIGAQSPVIGAKL
WTHSSRAQNGELDLHITATHLFPAEMSPTGVGFVLAVALTRPQSLGSVRLASRDPAVAPLIDLNFLAEAEDR
ARLLEGVKLARRIGRSEPLAGLIHAELGPGPEARSDAQIEAAIRATLDTYHHPTSSAPMGRAGERWAVVDLE
GRVHGLQGLRVIDASIFPDAISVATNITTIAVAEHLAQHIA*
AnnotationID:663GeneID:654
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 09:09:42
Gene Name:
Confidence Code:3
GeneProduct:putative dehydrogenase
Cell Localization:()
Synonyms:PA2124
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative oxidoreductase
Functional Category Confidence Code:5
COGs:COG2303,pfam00732
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC47662.1| (AP005943) GMC type oxidoreductase [Bradyrhizobium japonicum USDA
           110]
          Length = 541

 Score =  280 bits (717), Expect = 1e-74
 Identities = 191/529 (36%), Positives = 266/529 (50%), Gaps = 44/529 (8%)

>emb|CAE34679.1| (BX640450) putative GMC oxidoreductase [Bordetella bronchiseptica]
          Length = 533

 Score =  270 bits (691), Expect = 1e-71
 Identities = 199/529 (37%), Positives = 265/529 (50%), Gaps = 44/529 (8%)






 
Structural Features:
COG2303, BetA, Choline dehydrogenase and related flavoproteins 
[Amino acid transport and metabolism]
CD-Length = 542 residues,  97.0% aligned
Score =  330 bits (846), Expect = 4e-91
Identities = 204/532 (38%), Positives = 264/532 (49%), Gaps = 45/532 (8%)

pfam00732, GMC_oxred_N, GMC oxidoreductase. 
CD-Length = 291 residues,  98.6% aligned
Score =  209 bits (533), Expect = 7e-55
Identities = 125/292 (42%), Positives = 158/292 (54%), Gaps = 22/292 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1311




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18453




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32598




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:654_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:654
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1107
                           PA2124_tr
                           translation of PA2124
                           545
                           99.08
                           99.26
                           0
                           2745.0
     

     
     
41841
                           gb|AAG05512.1|AE004640_1
                           (AE004640) probable dehydrogenase [Pseudomonas aeruginosa PAO1]
                           545
                           99.08
                           99.26
                           0
                           2745.0
     

     






      

          
GC ORFID: 43656How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2124Glimmer Score: 

          
Start: 1646727Stop: 1648364

          
Length: 1638


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2124 translation of PA2124Homolog Bit Score 1061.0

          
Other Homologs:  t_PA2124 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACCAACCCGAAAACCCGGCGCGCCGCACCTTGCTGGCGCAGACCGTCGCCGGCTCCGCCGCGCTCGCC 
CTGGGCTCGCTGCTCGGCGGCGCGCCCGGCGTGGCCAGCGCCACGGCGGAAACGCCCCGCAAGGCCTTCGAT 
GGCGGCAGGATCGATGTGCTGATCGTCGGCGGCGGCTCCGCCGGCGCGGTCCTCGCCCGGCGCCTGAGCGAG 
CGCGGCGACCGCCGGGTACTGTTGCTGGAAGCCGGCCAGGCCTATCCGGCCTGGGACTACCCCAGGATCATC 
GCCAGCAGCGACAGCGTCGGCGGCGACCCCGCCAGCGACTGGGGCTACCAGTCCCAACCGGGGGCGATCGGG 
CATCCGATCCATGCGATCCGCGGCAAGGTCCTCGGCGGCAGCTCGGCGATCAACGGCGCGGTGGCGATCCGC 
GCGCGGCGCGAAGACTTCGCCCGCTGGAACCTGCCGGGCTGGTCCTACGACGACCTGCTGCCGGCGTTCCGC 
CGCCTGGAGACCCGCCAGGGCGGCGACCCGGCCCTGCACGGCGGGGACGGACCGCTGCCGGTGCGGCAACTG 
AGCCGCGCCGATCTCTCGCCGATGCAGAGGGCCTTCGTCGACGCCACCCTGGCCAACGGTTTCAAGGCCATC 
GTCGATTTCGACGGCGCCGACGCCAACGGCGTCGGGCCGTACCCGATGAATGTCGTCAACGGTGTGCGCGTC 
AACACCGGCATGGCCTATCTCGACAACGCCGTGCGCGGCCGCGCCAACCTGTCGATCCGCGGCGACGCGCTG 
GTCGACCGGGTGCTCTTCGAAGGTAAGCGCGCGGTGGGCGTGCGCCTGGCCTCCGGCGAGGAAATCCACGCC 
GGCGAAGTGATCCTCAGCGCCGGCGCCTACGGCAGCCCGGCGATCCTGCTGCGCTCCGGTGTCGGCCCGGCC 
GACGAGCTGAAGGCGCTGTCGATCCCGTTGCTTGCCGACTTGCCGGTGGGCCGCCGGCTCAAGGACCATCCG 
TTCTACTACAACGCCTATGCCGCCCGGCCGGAGCGCATCGGCGCGCAGTCGCCGGTGATCGGCGCCAAGCTC 
TGGACCCATAGCTCGCGGGCGCAGAACGGCGAGCTGGACCTGCACATCACCGCCACCCACCTGTTCCCCGCC 
GAGATGAGCCCGACCGGGGTCGGCTTCGTCCTCGCCGTGGCCCTGACCCGGCCGCAATCGCTGGGCAGTGTG 
CGCCTGGCCAGCCGCGACCCGGCCGTCGCGCCGCTGATCGACCTGAACTTCCTCGCCGAGGCCGAAGACCGC 
GCGCGGTTGCTGGAAGGGGTCAAGCTGGCGCGCCGGATCGGCCGCAGCGAACCGCTCGCCGGGCTGATCCAC 
GCCGAACTCGGACCAGGGCCCGAGGCACGCAGCGATGCGCAGATCGAAGCGGCGATCCGCGCCACCCTCGAT 
ACCTACCACCACCCGACCTCCAGCGCGCCGATGGGCCGCGCCGGCGAGCGCTGGGCGGTGGTCGACCTGGAG 
GGCAGGGTGCATGGCCTGCAAGGATTGCGGGTGATCGACGCCTCGATCTTCCCCGATGCCATTTCGGTGGCC 
ACCAACATCACCACCATCGCCGTTGCCGAGCACCTCGCGCAGCACATCGCCTGA