ViewGene

Locus Name:
GeneID:
Location:

GeneID:6537
TrivialName: PA14_12430
AnnotatorUID: urbach
Modification Date/Time:2006-08-22 20:08:33
LocusName:PA14_12430
PAO1 Ortholog Locus:
Sequence Length:1263
Protein Length:420
Start: 1070454
Stop: 1071716
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07361.1|AE004815_5 (AE004815) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 418/420 (99%), Positives = 419/420 (99%) This seems to represent a PAO1 gene disrupted by a 49 base insertion. 6538 looks like the other part of this gene
Sequence:
GTGGGCTTGCTGTCGCTGGCGCTGGCCGACCGGATCAACGCGATGAAGGAGGAGCGCGCGCGAATCCTCCAG
GAGTCCAGCCGCAAGCTGGAAGCGCTGAACCAGGAACTGGCCAACAGCAATCGCCTGAAGGACGAGTTCCTC
GCCACCGTCACCCACGAACTGCGCACCCCGATGAGCGGGGTGATCGGTTCGCTGGAGCTGATGCAGACGGTG
CCGATGGACGTCGAACTCGCCGAGTACCAGCGCACCGCCGCCGGTTCGGCGCGGGACATGATGCGGATGGTC
AACGACATCCTCGCCCTCATCGAACTGCAGGCCGGCAAGCTTTACCCGCGCCGCGAGCCGTTCAGCCTGCGC
GGCCTGTTCGACAGCCTGCGCGCGCAGTACGCGCCGCGCGCCGAGGAGAAGGGCCTGCGCTTCGCCCTGCAA
CTGGACGACAGCCTGCCGGACACCCTCGAAGGCGATGCCGGCAAGCTGGCCCAGGCGCTGGGCTACCTGGTC
GACAACGCGATCAAGTTCACCGCCAGGGGCAGCGTCACCCTGCGCGTCGCCGCCGGGCGTACCCATGACGGG
GTGGCGCTGCGGGTGGAAGTGATCGACACCGGCATCGGTTTCGACATGGCCGCCGGCAGCGACCTCTACCAG
CGTTTCGTCCAGGCCGACAGCTCGTTGACCCGTGGCTACGGAGGCCTCGGCATCGGCCTGGCTCTGTGCCGC
AAGCTGGTGGAGCTGCTTGGCGGCGAGCTGACCCACGAGTCCCGGCCGGGACAGGGCAGCCGCTTCCTCCTG
CGCCTGCAACTGACCCAGCCGGCCCAGGGCCTGGCGCCGCCGCCGCGGCGCGCCGGCGGGCAGGCGGTGCGG
CGTCCCGAGGAGTGCACGGTGCTGGTGGTGGAGGACAACGCCATCAACCAGTTGGTGACTCGCGGCATGCTG
CTCAAACTCGGCTACCGGGTGCGCACCGCCGACAACGGCAGCGAGGCCCTGGAGTTGCTGGCGCGCGAGCGG
CCGGACGGCGTACTGCTCGACTGCCAGATGCCGGTGATGGACGGCTTCGCCACCTGTCGGGCGATCCGCGCG
CTGCCCGGCTGCGCGGAACTGCCGGTGCTGGCGTTGACCGCCCACAGCCACAGCGGCGATCGCGAGCGCTGC
CTGGCGGCGGGCATGAGCGACTACATGGCCAAGCCGGTCAAGTTCGAAGAGTTGCAGACCCTGCTGCACGAT
TGGCTGCTGTGCCAGCCGATCGTCACCAAGTCCGCCTGA
Translation:
MGLLSLALADRINAMKEERARILQESSRKLEALNQELANSNRLKDEFLATVTHELRTPMSGVIGSLELMQTV
PMDVELAEYQRTAAGSARDMMRMVNDILALIELQAGKLYPRREPFSLRGLFDSLRAQYAPRAEEKGLRFALQ
LDDSLPDTLEGDAGKLAQALGYLVDNAIKFTARGSVTLRVAAGRTHDGVALRVEVIDTGIGFDMAAGSDLYQ
RFVQADSSLTRGYGGLGIGLALCRKLVELLGGELTHESRPGQGSRFLLRLQLTQPAQGLAPPPRRAGGQAVR
RPEECTVLVVEDNAINQLVTRGMLLKLGYRVRTADNGSEALELLARERPDGVLLDCQMPVMDGFATCRAIRA
LPGCAELPVLALTAHSHSGDRERCLAAGMSDYMAKPVKFEELQTLLHDWLLCQPIVTKSA*
AnnotationID:6538GeneID:6537
AnnotatorUID: danlee
Modification Date/Time: 2006-05-02 15:03:59
Gene Name:
Confidence Code:3
GeneProduct:C-terminus of probable two-component sensor
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|9950164|gb|AAG07361.1|  probable two-component sensor [Pseudomonas aeruginosa PAO1]
 gi|15599169|ref|NP_252663.1|  probable two-component sensor [Pseudomonas aeruginosa PAO1]
Length=795

 Score =  815 bits (2106),  Expect = 0.0
 Identities = 418/420 (99%), Positives = 419/420 (99%), Gaps = 0/420 (0%)
Structural Features:
Genomic Context:
Comment:
C-terminus aligns with last 420 amino acids (53%) of PAO1 PA3974.
PA14 has a 49 base insertion that disrupts this ORF.
ReferenceID:16298
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30174
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6537

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7997 PA3974_tr translation of PA3974 795 52.70 52.70 375 2109.0
200000 gb|AAG07361.1|AE004815_5 (AE004815) probable two-component sensor [Pseudomonas aeruginosa PAO1] 795 52.70 52.70 375 2109.0
200010 gb|AAQ59257.2| (AE016915) probable sensor/response hybrid [Chromobacterium violaceum ATCC 12472] 682 25.80 34.60 280 646.0
200007 gb|AAK25153.1| (AE005982) sensory box histidine kinase/response regulator [Caulobacter crescentus CB15] 670 24.92 36.71 278 580.0
200004 dbj|BAC87974.1| (AP006568) two-component hybrid sensor and regulator [Gloeobacter violaceus PCC 7421] 704 24.85 35.08 296 700.0
GC ORFID: 49539How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 3883484Stop: 3882222
Length: 1263
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3974 translation of PA3974Homolog Bit Score 816.0
Other Homologs: t_PA3974 translation of PA3974 (BLASTP 816), psyr_15may02_Scaffold4_revised_gene5344 related to: gi|15599169|ref|NP_252663.1| (NC_002516) probable two-component sensor [Pseudomonas aeruginosa] pir||D83149 probable two-component sensor PA3974 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG07361.1|AE004815_5 (AE004815) probable two-co-TRUNCATED- (BLASTP 293), t_PA3462 translation of PA3462 (BLASTP 190), psyr_15may02_Scaffold8_revised_gene7663 related to: gi|15598020|ref|NP_251514.1| (NC_002516) probable sensor/response regulator hybrid [Pseudomonas aeruginosa] pir||F83292 probable sensor/response regulator hybrid PA2824 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06212.1|AE004709_5 (A-TRUNCATED- (BLASTP 117), t_PA2824 translation of PA2824 (BLASTP 113), t_PA4856 translation of PA4856 (BLASTP 100)
GC ORF Sequence
GTGGGCTTGCTGTCGCTGGCGCTGGCCGACCGGATCAACGCGATGAAGGAGGAGCGCGCGCGAATCCTCCAG
GAGTCCAGCCGCAAGCTGGAAGCGCTGAACCAGGAACTGGCCAACAGCAATCGCCTGAAGGACGAGTTCCTC
GCCACCGTCACCCACGAACTGCGCACCCCGATGAGCGGGGTGATCGGTTCGCTGGAGCTGATGCAGACGGTG
CCGATGGACGTCGAACTCGCCGAGTACCAGCGCACCGCCGCCGGTTCGGCGCGGGACATGATGCGGATGGTC
AACGACATCCTCGCCCTCATCGAACTGCAGGCCGGCAAGCTTTACCCGCGCCGCGAGCCGTTCAGCCTGCGC
GGCCTGTTCGACAGCCTGCGCGCGCAGTACGCGCCGCGCGCCGAGGAGAAGGGCCTGCGCTTCGCCCTGCAA
CTGGACGACAGCCTGCCGGACACCCTCGAAGGCGATGCCGGCAAGCTGGCCCAGGCGCTGGGCTACCTGGTC
GACAACGCGATCAAGTTCACCGCCAGGGGCAGCGTCACCCTGCGCGTCGCCGCCGGGCGTACCCATGACGGG
GTGGCGCTGCGGGTGGAAGTGATCGACACCGGCATCGGTTTCGACATGGCCGCCGGCAGCGACCTCTACCAG
CGTTTCGTCCAGGCCGACAGCTCGTTGACCCGTGGCTACGGAGGCCTCGGCATCGGCCTGGCTCTGTGCCGC
AAGCTGGTGGAGCTGCTTGGCGGCGAGCTGACCCACGAGTCCCGGCCGGGACAGGGCAGCCGCTTCCTCCTG
CGCCTGCAACTGACCCAGCCGGCCCAGGGCCTGGCGCCGCCGCCGCGGCGCGCCGGCGGGCAGGCGGTGCGG
CGTCCCGAGGAGTGCACGGTGCTGGTGGTGGAGGACAACGCCATCAACCAGTTGGTGACTCGCGGCATGCTG
CTCAAACTCGGCTACCGGGTGCGCACCGCCGACAACGGCAGCGAGGCCCTGGAGTTGCTGGCGCGCGAGCGG
CCGGACGGCGTACTGCTCGACTGCCAGATGCCGGTGATGGACGGCTTCGCCACCTGTCGGGCGATCCGCGCG
CTGCCCGGCTGCGCGGAACTGCCGGTGCTGGCGTTGACCGCCCACAGCCACAGCGGCGATCGCGAGCGCTGC
CTGGCGGCGGGCATGAGCGACTACATGGCCAAGCCGGTCAAGTTCGAAGAGTTGCAGACCCTGCTGCACGAT
TGGCTGCTGTGCCAGCCGATCGTCACCAAGTCCGCCTGA