ViewGene
Locus Name:
GeneID:
Location:

GeneID:653
TrivialName: PA14_16410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16410
PAO1 Ortholog Locus:PA3709
Sequence Length:1620
Protein Length:539
Start: 1403759
Stop: 1405378
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07096.1|AE004790_1 (AE004790) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 536/539 (99%), Positives = 538/539 (99%)
Sequence:
ATGACCGAGTACGCAACGACCCCTTCCTACACAGTGCCTGCGACCACGCCCCAGGAGGAGCGCAAGGTGATC
TTCGCCTCCTCGCTGGGCACGGTCTTCGAGTGGTACGACTTCTTCCTCTACGGCGCCCTGGCGGCGGTGATC
AGCAAGCAGTTCTTCGCCGGCGTCAACGACACCACCGCCTTCATCTTCGCCCTGATGGCCTTCGCCGCCGGC
TTCCTGGTGCGGCCCTTCGGCGCGCTGGTGTTCGGCCGCCTGGGCGACATGATCGGGCGCAAGTACACCTTC
CTGGTGACCATCCTGCTGATGGGGCTGTCGACCTTCGCCGTCGGCCTGCTGCCCACCTATGCCTCGATCGGT
GTCGCCGCGCCGATCATCCTGGTCACCTTGCGCATGCTCCAGGGCCTGGCCCTGGGCGGCGAGTACGGCGGC
GCGGCGATCTACGTCGCCGAGCACGCCCCGGCGAACAAGCGCGGTAGCTACACCAGTTGGATCCAGTCCACC
GCGACCCTCGGCCTGTTGCTCTCGCTGCTGGTGATCCTGGCTTGCCGCCAGTTGACCGGCGACGAGTTCGAG
ACCTGGGGCTGGCGCCTGCCATTCCTGCTGTCCATCGTCCTGCTGGGCATTTCCACCTGGATCCGCCTGTCC
ATGCGCGAGTCGCCGGCGTTCCTCAAGATGAAGGCGGAGGGCAAGGTCAGCAAGGCGCCGCTGCGCGAGTCC
TTCACCCAGTGGGGCAACCTCAAGGTGGTGCTGACCGCGCTGTTCAGCATCAATGCCGGCCAGGCGGTGACC
TTCTACACGGCGCAGTTCTACGTGCTGTTCTTCCTCACCCAGGTGCTCAAGGTCGATGGCGGCACCGCCAAC
GGTCTGCTGATCGTCGCCCTGGTGCTTGGCGCGCCGTTCTTCATCGTCGCCGGCTGGCTGTCCGACCGCATC
GGCCGCAAGCCGGTGCTGCTGGCCGGCCTGCTGCTCGCCACGCTGTTCTACTTCCCGCTGTTCAAGGGCTTG
ACCCACTACGCCAATCCGGCCATCGACCAGGCCAGCCGGCAGTCGCCGATCAGCGTGGTGGCCGACCCGGCG
ACCTGCACCTTCCAGTTCGACCCGGTGGGCAAGGCGACCTTCGACAGCCCCTGCGACAAGGTCAAGACCTTC
CTGGTCAAGGCCGGCCTGCCCTACTCGACGGTGGCGGCGCCCGCCGGCAGCGACGTCAGGATACGGGTCGGC
GAAACCGAGATCGCCGGCTTCGACGCCGAAGCGATGGCGGCCGCGGTGAAGGCGGCAGGCTACCCGCAGCAG
GCCGACGGTAGCCAGGTGAACAAGCCGATGGTGATCGCCATCATCTTCGCCCTGGTACTGATCTCCACCCTC
TGCTACGGCCCGCTGGCGGCGCTGATGGTCGAACTGTTCCCGACCCGCATCCGCTATTCCTCGCTGTCCCTG
CCGTACCACATCGGCAACGGCTGGTTCGGCGGCTTCCTGCCCACGGTCTCGTTCGCCCTGGTGGTGTACACC
GGCGACATCTTCTACGGCCTCTGGTATCCGGTGCTGATCACCGGCGGCAGCCTGGTCTGCGCCTTGCTGTTC
CTCCGCGAAACCCGCCATACCGATATCCACCGGTGA
Translation:
MTEYATTPSYTVPATTPQEERKVIFASSLGTVFEWYDFFLYGALAAVISKQFFAGVNDTTAFIFALMAFAAG
FLVRPFGALVFGRLGDMIGRKYTFLVTILLMGLSTFAVGLLPTYASIGVAAPIILVTLRMLQGLALGGEYGG
AAIYVAEHAPANKRGSYTSWIQSTATLGLLLSLLVILACRQLTGDEFETWGWRLPFLLSIVLLGISTWIRLS
MRESPAFLKMKAEGKVSKAPLRESFTQWGNLKVVLTALFSINAGQAVTFYTAQFYVLFFLTQVLKVDGGTAN
GLLIVALVLGAPFFIVAGWLSDRIGRKPVLLAGLLLATLFYFPLFKGLTHYANPAIDQASRQSPISVVADPA
TCTFQFDPVGKATFDSPCDKVKTFLVKAGLPYSTVAAPAGSDVRIRVGETEIAGFDAEAMAAAVKAAGYPQQ
ADGSQVNKPMVIAIIFALVLISTLCYGPLAALMVELFPTRIRYSSLSLPYHIGNGWFGGFLPTVSFALVVYT
GDIFYGLWYPVLITGGSLVCALLFLRETRHTDIHR*
AnnotationID:662GeneID:653
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 13:01:31
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA3709
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00083
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65691.1|AE016196_2 (AE016774) major facilitator family transporter [Pseudomonas putida
           KT2440]
          Length = 539

 Score =  844 bits (2181), Expect = 0.0
 Identities = 417/539 (77%), Positives = 474/539 (87%), Gaps = 1/539 (0%)

>gb|AAN68178.1|AE016451_2 (AE016783) metabolite MFS transporter, MHS family [Pseudomonas
           putida KT2440]
          Length = 558

 Score =  692 bits (1785), Expect = 0.0
 Identities = 340/537 (63%), Positives = 417/537 (77%), Gaps = 17/537 (3%)

>emb|CAD14075.1| (AL646059) PUTATIVE SUGAR TRANSPORTER TRANSMEMBRANE PROTEIN
           [Ralstonia solanacearum]
          Length = 567

 Score =  684 bits (1765), Expect = 0.0
 Identities = 343/549 (62%), Positives = 420/549 (76%), Gaps = 22/549 (4%)






 
Structural Features:
pfam00083, Sugar_tr, Sugar (and other) transporter.
CD-Length = 448 residues, only  74.1% aligned
Score =  128 bits (322), Expect = 4e-30
Identities = 81/343 (23%), Positives = 146/343 (42%), Gaps = 44/343 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1309




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18451




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31842




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:653_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:653
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1105
                           PA3709_tr
                           translation of PA3709
                           539
                           99.44
                           99.81
                           0
                           2747.0
     

     
     
41806
                           gb|AAG07096.1|AE004790_1
                           (AE004790) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           539
                           99.44
                           99.81
                           0
                           2747.0
     

     
     
41807
                           gb|AAN65691.1|AE016196_2
                           (AE016774) major facilitator family transporter [Pseudomonas putida KT2440]
                           540
                           77.22
                           87.77
                           2
                           2183.0
     

     
     
41808
                           gb|AAQ58974.1|
                           (AE016914) probable MFS transporter [Chromobacterium violaceum ATCC 12472]
                           541
                           67.09
                           78.74
                           9
                           1882.0
     

     
     
41812
                           gb|AAN68178.1|AE016451_2
                           (AE016783) metabolite MFS transporter, MHS family [Pseudomonas putida KT2440]
                           558
                           61.46
                           75.80
                           19
                           1791.0
     

     






      

          
GC ORFID: 43655How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3709Glimmer Score: 

          
Start: 3550178Stop: 3548559

          
Length: 1620


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3709 translation of PA3709Homolog Bit Score 1062.0

          
Other Homologs:  t_PA3709 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGAGTACGCAACGACCCCTTCCTACACAGTGCCTGCGACCACGCCCCAGGAGGAGCGCAAGGTGATC 
TTCGCCTCCTCGCTGGGCACGGTCTTCGAGTGGTACGACTTCTTCCTCTACGGCGCCCTGGCGGCGGTGATC 
AGCAAGCAGTTCTTCGCCGGCGTCAACGACACCACCGCCTTCATCTTCGCCCTGATGGCCTTCGCCGCCGGC 
TTCCTGGTGCGGCCCTTCGGCGCGCTGGTGTTCGGCCGCCTGGGCGACATGATCGGGCGCAAGTACACCTTC 
CTGGTGACCATCCTGCTGATGGGGCTGTCGACCTTCGCCGTCGGCCTGCTGCCCACCTATGCCTCGATCGGT 
GTCGCCGCGCCGATCATCCTGGTCACCTTGCGCATGCTCCAGGGCCTGGCCCTGGGCGGCGAGTACGGCGGC 
GCGGCGATCTACGTCGCCGAGCACGCCCCGGCGAACAAGCGCGGTAGCTACACCAGTTGGATCCAGTCCACC 
GCGACCCTCGGCCTGTTGCTCTCGCTGCTGGTGATCCTGGCTTGCCGCCAGTTGACCGGCGACGAGTTCGAG 
ACCTGGGGCTGGCGCCTGCCATTCCTGCTGTCCATCGTCCTGCTGGGCATTTCCACCTGGATCCGCCTGTCC 
ATGCGCGAGTCGCCGGCGTTCCTCAAGATGAAGGCGGAGGGCAAGGTCAGCAAGGCGCCGCTGCGCGAGTCC 
TTCACCCAGTGGGGCAACCTCAAGGTGGTGCTGACCGCGCTGTTCAGCATCAATGCCGGCCAGGCGGTGACC 
TTCTACACGGCGCAGTTCTACGTGCTGTTCTTCCTCACCCAGGTGCTCAAGGTCGATGGCGGCACCGCCAAC 
GGTCTGCTGATCGTCGCCCTGGTGCTTGGCGCGCCGTTCTTCATCGTCGCCGGCTGGCTGTCCGACCGCATC 
GGCCGCAAGCCGGTGCTGCTGGCCGGCCTGCTGCTCGCCACGCTGTTCTACTTCCCGCTGTTCAAGGGCTTG 
ACCCACTACGCCAATCCGGCCATCGACCAGGCCAGCCGGCAGTCGCCGATCAGCGTGGTGGCCGACCCGGCG 
ACCTGCACCTTCCAGTTCGACCCGGTGGGCAAGGCGACCTTCGACAGCCCCTGCGACAAGGTCAAGACCTTC 
CTGGTCAAGGCCGGCCTGCCCTACTCGACGGTGGCGGCGCCCGCCGGCAGCGACGTCAGGATACGGGTCGGC 
GAAACCGAGATCGCCGGCTTCGACGCCGAAGCGATGGCGGCCGCGGTGAAGGCGGCAGGCTACCCGCAGCAG 
GCCGACGGTAGCCAGGTGAACAAGCCGATGGTGATCGCCATCATCTTCGCCCTGGTACTGATCTCCACCCTC 
TGCTACGGCCCGCTGGCGGCGCTGATGGTCGAACTGTTCCCGACCCGCATCCGCTATTCCTCGCTGTCCCTG 
CCGTACCACATCGGCAACGGCTGGTTCGGCGGCTTCCTGCCCACGGTCTCGTTCGCCCTGGTGGTGTACACC 
GGCGACATCTTCTACGGCCTCTGGTATCCGGTGCTGATCACCGGCGGCAGCCTGGTCTGCGCCTTGCTGTTC 
CTCCGCGAAACCCGCCATACCGATATCCACCGGTGA