ViewGene

Locus Name:
GeneID:
Location:

GeneID:6523
TrivialName: PA14_12910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12910
PAO1 Ortholog Locus:
Sequence Length:180
Protein Length:59
Start: 1107072
Stop: 1107251
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07326.1|AE004812_1 (AE004812) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 39/41 (95%), Positives = 40/41 (97%)
Sequence:
ATGAGCGAAGCCCGGCTCCACTCGCCCGACCCCAGGACACCGCGACCCATGGCCGGTTGGGCGGCAAGCCTG
CGCGACAGTGGACTGCTGGCGCTGGCAGTGCCGCGCGCGTTCGCCGGGCTGCTTGCCTGCCTGCGCCGACAG
GCCCTGGAAGCCCGTCTGCTGGGCGCTGCCCTGTAG
Translation:
MSEARLHSPDPRTPRPMAGWAASLRDSGLLALAVPRAFAGLLACLRRQALEARLLGAAL*
AnnotationID:6524GeneID:6523
AnnotatorUID: danlee
Modification Date/Time: 2006-07-03 13:01:58
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
PA3939 [gene=PA3939] [prot=hypothetical protein] [comment=PA3939]
          Length = 306

 Score = 83.6 bits (205), Expect = 3e-018
 Identities = 39/41 (95%), Positives = 40/41 (97%)
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
N-terminus matches first 40 acids of PAO1 PA3939.  Only 12% identity along whole length of PAO3939.
ReferenceID:12842
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30147
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49525How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 3846866Stop: 3846687
Length: 180
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGAGCGAAGCCCGGCTCCACTCGCCCGACCCCAGGACACCGCGACCCATGGCCGGTTGGGCGGCAAGCCTG
CGCGACAGTGGACTGCTGGCGCTGGCAGTGCCGCGCGCGTTCGCCGGGCTGCTTGCCTGCCTGCGCCGACAG
GCCCTGGAAGCCCGTCTGCTGGGCGCTGCCCTGTAG