ViewGene

Locus Name:
GeneID:
Location:

GeneID:652
TrivialName: PA14_48610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48610
PAO1 Ortholog Locus:PA1214
Sequence Length:1599
Protein Length:532
Start: 4322421
Stop: 4324019
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04603.1|AE004551_7 (AE004551) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 529/532 (99%), Positives = 529/532 (99%)
Sequence:
ATGTGCGGCATCCTCGGTTACGTCGGCACCGGTTTCAGTGTCTCGCGCTTCGCCGGAGCGCTACGCCTGCTG
GCCCATCGGGGTCCGTTCGGCGAGGGCATCGCGGCCCTGCCGAACGGCGCCATCGGTATGACCCGCCTGCCG
ATGTCCGGCGCCGCGGCGGTACCGCTGCCGCCGCAGGAGGGCCTGCGGCGGGTCGCCTACAACGGCGAGGTC
TACCAGGCCGGCTGCGAAATCCATGGCGAGATCCGCCTGCTGCTCGACGGCTTGCAGCGCGGGGTACTGCCG
GACGGCATGTACGCCCTCGCCAGCTGGGACCCGCAGACCCGGCAATTGACCCTGCTGCGCGACGAGTTCGGC
ATCAAGCCGCTGTACTACAGCTACCAGCCCGAGCGCGGCCTGCTGGCCTTCGCCTCCGAGCCGCGGGCGCTG
CTGCACCTGCTCGGCGGCGCCCGTGCCGACGCCGAGGCGATCGCCCAGGTGGTCGCCGCCGGCGTGCCGCTG
GAAGGCCAGACCCTGTTCCAGCAGGTCCGTCTGCTACTGCCCGGCGAGGTGTTGCGCTTCGATCTCTCCCAG
GAGCGTCCGCGCCTCTGCCAGCGCCAGCGGCTGGCCACCGCCCCGGCCAGCGAGGCGGACAGCCTCGACGAG
CAGCTCGGTGAAACCCTCGAACGCTGCCGCCAGACCTTCCGCCCCTGCGCCCTGCTGGTCAGCGGCGGGGTC
GATTCCAACCTGCTCGGCAGCTACCTGGACCCGCAGTTGCAACGCTTCCACCTGTGCCTGGAAGGCGACGAG
GAAAGCCTGCTGCCACACCCTCGGCTGCAACGCTTCGAGCTGCGCCAGGAAGCCTTCATGCCGCTGCTGCGT
CGCGCGGTCGGCAACTTCGGCGGGGCGACACGGATGTCCAGCCTGCTGATGTACCAGCGCCTGGCCGACGGT
ATCGGCGAGCAGGGCTATCACTGCGTGCTTCTCGGCGAAGGCGCCGACGAACTGTTCTGGGGCTACCCGCGC
CATCTCGAACTCTGGCGCCGGCGCGACGCGCCGGAACCGCGGCGCTTCGCCGCCGCCTGGTTCGGCGAGTAC
CGGCGCAAGGCCGCGCTGCTGGCGGAACCGGCGGGCCGACGGGTCGCCGAGCGGATCGAGGAACTCGCCCAC
GAGGCCCTCGGCCAGGGCCTCGAGGCGGCGATCGGCCAGTTCGACCTGCACTACTCGCTGGAGCCGCTGCTG
CGCCGCGCCGACCATCTGCTGATGTCGCGCACCATCGAAGCGCGCACCCCCTACCTGCATGGCGCCCTGGCG
CAGCGCGCCGGGCGCCTCCAGCGGATCGTCGGCGACACCGCCAAGGCACCGCTGGTGGCGCTCCTGGAGCAG
CGCGAGAAACGCTGGCAGGCGCAGCCGAAACGGCATTTCCGCCTGCCGTTCGAACGGTGGCCGCAGGCCCTC
GGGGAAATGCGCCGGCACCTCGCCGAACGCCTGCCGGCGCTCCACGACCTCGGCCTGGAAGGCCTGGATGCA
CCGAGCGTCGCGGCGCTGCCCGGCGACCAATTGTTCACCCTCACCACCCTGTCGCTCTGGCAGCAGGAATAC
GGAGCCTCGCTATGA
Translation:
MCGILGYVGTGFSVSRFAGALRLLAHRGPFGEGIAALPNGAIGMTRLPMSGAAAVPLPPQEGLRRVAYNGEV
YQAGCEIHGEIRLLLDGLQRGVLPDGMYALASWDPQTRQLTLLRDEFGIKPLYYSYQPERGLLAFASEPRAL
LHLLGGARADAEAIAQVVAAGVPLEGQTLFQQVRLLLPGEVLRFDLSQERPRLCQRQRLATAPASEADSLDE
QLGETLERCRQTFRPCALLVSGGVDSNLLGSYLDPQLQRFHLCLEGDEESLLPHPRLQRFELRQEAFMPLLR
RAVGNFGGATRMSSLLMYQRLADGIGEQGYHCVLLGEGADELFWGYPRHLELWRRRDAPEPRRFAAAWFGEY
RRKAALLAEPAGRRVAERIEELAHEALGQGLEAAIGQFDLHYSLEPLLRRADHLLMSRTIEARTPYLHGALA
QRAGRLQRIVGDTAKAPLVALLEQREKRWQAQPKRHFRLPFERWPQALGEMRRHLAERLPALHDLGLEGLDA
PSVAALPGDQLFTLTTLSLWQQEYGASL*
AnnotationID:661GeneID:652
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 06:06:34
Gene Name:
Confidence Code:3
GeneProduct:putative sparagine synthase
Cell Localization:()
Synonyms:PA1214
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0367,cd00712
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) 
[Amino acid transport and metabolism]
CD-Length = 542 residues,  99.1% aligned
Score =  258 bits (660), Expect = 1e-69
Identities = 125/572 (21%), Positives = 195/572 (34%), Gaps = 75/572 (13%)

cd00712, Asn_B, Glutamine amidotransferases class-II (GATase) 
asparagine synthase_B type.
CD-Length = 225 residues,  94.7% aligned
Score =  118 bits (298), Expect = 1e-27
Identities = 69/218 (31%), Positives = 89/218 (40%), Gaps = 31/218 (14%)
Genomic Context:
Comment:
ReferenceID:1307
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18449
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37556
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:652_cdd.html
URL:
Homologs By Global Alignment
Gene ID:652

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1104 PA1214_tr translation of PA1214 532 99.43 99.43 0 2747.0
41805 gb|AAG04603.1|AE004551_7 (AE004551) hypothetical protein PA1214 [Pseudomonas aeruginosa PAO1] 532 99.43 99.43 0 2747.0
GC ORFID: 43654How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1214Glimmer Score:
Start: 631487Stop: 629889
Length: 1599
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1214 translation of PA1214Homolog Bit Score 1062.0
Other Homologs: t_PA1214 (ORF: GLIMMER)
GC ORF Sequence
ATGTGCGGCATCCTCGGTTACGTCGGCACCGGTTTCAGTGTCTCGCGCTTCGCCGGAGCGCTACGCCTGCTG
GCCCATCGGGGTCCGTTCGGCGAGGGCATCGCGGCCCTGCCGAACGGCGCCATCGGTATGACCCGCCTGCCG
ATGTCCGGCGCCGCGGCGGTACCGCTGCCGCCGCAGGAGGGCCTGCGGCGGGTCGCCTACAACGGCGAGGTC
TACCAGGCCGGCTGCGAAATCCATGGCGAGATCCGCCTGCTGCTCGACGGCTTGCAGCGCGGGGTACTGCCG
GACGGCATGTACGCCCTCGCCAGCTGGGACCCGCAGACCCGGCAATTGACCCTGCTGCGCGACGAGTTCGGC
ATCAAGCCGCTGTACTACAGCTACCAGCCCGAGCGCGGCCTGCTGGCCTTCGCCTCCGAGCCGCGGGCGCTG
CTGCACCTGCTCGGCGGCGCCCGTGCCGACGCCGAGGCGATCGCCCAGGTGGTCGCCGCCGGCGTGCCGCTG
GAAGGCCAGACCCTGTTCCAGCAGGTCCGTCTGCTACTGCCCGGCGAGGTGTTGCGCTTCGATCTCTCCCAG
GAGCGTCCGCGCCTCTGCCAGCGCCAGCGGCTGGCCACCGCCCCGGCCAGCGAGGCGGACAGCCTCGACGAG
CAGCTCGGTGAAACCCTCGAACGCTGCCGCCAGACCTTCCGCCCCTGCGCCCTGCTGGTCAGCGGCGGGGTC
GATTCCAACCTGCTCGGCAGCTACCTGGACCCGCAGTTGCAACGCTTCCACCTGTGCCTGGAAGGCGACGAG
GAAAGCCTGCTGCCACACCCTCGGCTGCAACGCTTCGAGCTGCGCCAGGAAGCCTTCATGCCGCTGCTGCGT
CGCGCGGTCGGCAACTTCGGCGGGGCGACACGGATGTCCAGCCTGCTGATGTACCAGCGCCTGGCCGACGGT
ATCGGCGAGCAGGGCTATCACTGCGTGCTTCTCGGCGAAGGCGCCGACGAACTGTTCTGGGGCTACCCGCGC
CATCTCGAACTCTGGCGCCGGCGCGACGCGCCGGAACCGCGGCGCTTCGCCGCCGCCTGGTTCGGCGAGTAC
CGGCGCAAGGCCGCGCTGCTGGCGGAACCGGCGGGCCGACGGGTCGCCGAGCGGATCGAGGAACTCGCCCAC
GAGGCCCTCGGCCAGGGCCTCGAGGCGGCGATCGGCCAGTTCGACCTGCACTACTCGCTGGAGCCGCTGCTG
CGCCGCGCCGACCATCTGCTGATGTCGCGCACCATCGAAGCGCGCACCCCCTACCTGCATGGCGCCCTGGCG
CAGCGCGCCGGGCGCCTCCAGCGGATCGTCGGCGACACCGCCAAGGCACCGCTGGTGGCGCTCCTGGAGCAG
CGCGAGAAACGCTGGCAGGCGCAGCCGAAACGGCATTTCCGCCTGCCGTTCGAACGGTGGCCGCAGGCCCTC
GGGGAAATGCGCCGGCACCTCGCCGAACGCCTGCCGGCGCTCCACGACCTCGGCCTGGAAGGCCTGGATGCA
CCGAGCGTCGCGGCGCTGCCCGGCGACCAATTGTTCACCCTCACCACCCTGTCGCTCTGGCAGCAGGAATAC
GGAGCCTCGCTATGA