ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6513

TrivialName: PA14_13220

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_13220

PAO1 Ortholog Locus:

Sequence Length: 429

Protein Length: 142

Start: 1138602

Stop: 1138174

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05667.1|AE004653_10 (AE004653) ArsC protein [Pseudomonas aeruginosa PAO1] Identities = 55/136 (40%), Positives = 72/136 (52%), Gaps = 7/136 (5%)

Sequence:

ATGACGGACCGACTGCGCGTACTCTTCGTCTGTATCGCCAATGACGCCCGCTCCCTGATCGCCGAGGCCATC
CTGCGGCACACCGACGGCGAACATTTCGCCGCGTTCAGCGCCGGCGTGCGCCCCGCTGGCGTCGACCCGCGC
ACCCTGAGCGTGCTCGAACACGCCGGCATCCCGACCCAAGGGTTGAGTAGCAAGCCGCTGGAGACCTTCGCC
GGGGAGTCCTTCGACTATCTCATCGACCTCTGCGACAAAGACACCGACGAACTCGCACAGTTGCCGCACTCC
GCCCAGACCCTCGCCTGGAGCTGCAGCGACCCGACCCTCCAGGAAGGCCTGGAAGGATTCAGCCATGTCCTG
CAGGAGCTGAACGACCGGGTACGGCTGTTCCTGGCAGTGAAGAACCGCCCCCATGGGGAACGCTCCTGA

Translation:

MTDRLRVLFVCIANDARSLIAEAILRHTDGEHFAAFSAGVRPAGVDPRTLSVLEHAGIPTQGLSSKPLETFA
GESFDYLIDLCDKDTDELAQLPHSAQTLAWSCSDPTLQEGLEGFSHVLQELNDRVRLFLAVKNRPHGERS*

AnnotationID:6514 GeneID:6513

AnnotatorUID: danlee

Modification Date/Time: 2005-10-19 14:02:04

Gene Name:

Confidence Code: 3

GeneProduct: possible protein-tyrosine-phosphatase

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (20) Putative enzymes

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|71280619|ref|YP_270034.1|  transcriptional regulator, ArsR family [Colwellia psychrerythraea 34H]
     Length=275
     Score =  120 bits (302),  Expect = 1e-26
     Identities = 61/133 (45%), Positives = 82/133 (61%), Gaps = 0/133 (0%)

gi|69953590|ref|ZP_00640665.1|  Low molecular weight phosphotyrosine protein phosphatase:Bacterial 
regulatory protein, ArsR [Shewanella frigidimarina NCIMB 400]
     Length=270
     Score =  112 bits (279),  Expect = 5e-24
     Identities = 58/135 (42%), Positives = 80/135 (59%), Gaps = 0/135 (0%)

Structural Features:

COG0394, Wzb, Protein-tyrosine-phosphatase [Signal transduction mechanisms].
             CD-Length = 139 residues,  95.7% aligned
             Score = 89.5 bits (222), Expect = 2e-19

pfam01451, LMWPc, Low molecular weight phosphotyrosine protein phosphatase..
             CD-Length = 140 residues,  98.6% aligned
             Score = 88.0 bits (218), Expect = 4e-19

cd00115, LMWPc, Low molecular weight phosphatase family.
             CD-Length = 141 residues,  99.3% aligned
             Score = 88.0 bits (218), Expect = 4e-19

Genomic Context:

Comment:

ReferenceID:12822

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17059

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6513_CDD.html

URL:

ReferenceID:30129

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

GC ORFID: `49515`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `3815336`	Stop: `3815764`
Length: `429`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
`ATGACGGACCGACTGCGCGTACTCTTCGTCTGTATCGCCAATGACGCCCGCTCCCTGATCGCCGAGGCCATC CTGCGGCACACCGACGGCGAACATTTCGCCGCGTTCAGCGCCGGCGTGCGCCCCGCTGGCGTCGACCCGCGC ACCCTGAGCGTGCTCGAACACGCCGGCATCCCGACCCAAGGGTTGAGTAGCAAGCCGCTGGAGACCTTCGCC GGGGAGTCCTTCGACTATCTCATCGACCTCTGCGACAAAGACACCGACGAACTCGCACAGTTGCCGCACTCC GCCCAGACCCTCGCCTGGAGCTGCAGCGACCCGACCCTCCAGGAAGGCCTGGAAGGATTCAGCCATGTCCTG CAGGAGCTGAACGACCGGGTACGGCTGTTCCTGGCAGTGAAGAACCGCCCCCATGGGGAACGCTCCTGA`