ViewGene
Locus Name:
GeneID:
Location:

GeneID:651
TrivialName: PA14_26720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26720
PAO1 Ortholog Locus:PA2888
Sequence Length:1617
Protein Length:538
Start: 2328768
Stop: 2327152
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06276.1|AE004715_2 (AE004715) probable biotin-dependent carboxylase [Pseudomonas aeruginosa PAO1]
Identities = 536/538 (99%), Positives = 538/538 (100%)
Sequence:
ATGCCCGCGATCCAGTCGGAACTCGACGTCAACGGCGAGGACTTCGCCCGTAACCGCGAGGCCATGCTCGCC
GCCGTGGCCGGCTTCCGCGAATTGGAGCAGAAGGTCCTGGACAAGGCCGCCGAGGCCAGGCCGAAGTTCGAG
AAACGCGGACAACTGCTGCCGCGCGAACGCCTGGCGTTGCTGCTCGATCCGGGCGCGCCGTTCCTCGAACTG
TCCTCGCTGGCCGGCTACAAGCTGCACGACGACAAGGACGGCACCCAGGCCGGCGGCGGGATCATCGCCGGG
ATCGGCTACATCGCCGGGGTGCGCTGCCTgGTCAGTGCCAGCAACAGCGCGATCAAGGGCGGCACCATCTCC
CCGACCGGGCTGAAGAAGACCCTGCGCCTGCAGCAGATCGCCATGGAGAACAAGCTGCCGGTGGTGACCCTC
ACCGAAAGCGGCGGCGCCAACCTCAACTATGCGGCGGAGATCTTCGTCGAAGGTGCGCGCGGCTTCGCCAAC
CAGGCGCGGATCTCCGCCATGGGCATTCCCCAGGTCACCGTGGTGCATGGTTCCAGCACCGCCGGCGGTGCC
TACCAGCCGGGGCTGTCGGACTACGTGGTGGTGGTGCGCGGCAAGGCCAAGATGTTCCTCGCCGGGCCGCCG
TTGCTCAAGGCCGCCACCGGCGAGATCGCCAGCGACGAGGAACTCGGCGGAGCCGAACTGCACGCGCAGGTC
GCCGGCACCGCGGAATACCTGGCGGAAAACGACGCCGACGGCGTGCGCCTGGCCCGCGAGATCGTCGGCATG
TTGCCGTGGAACGCACAACTGCCGGCGCGCCCGGCGCGTTCCTGGCGCGAACCGCTGTACCCGGTGGAGGAG
CTGCTCGGGGTGGTTCCGGCCGACCCGAAGAAGCCCTACGACGTCCGCGAGATCGTCGCGCGCATCGCCGAC
GGCTCCGAGTTCCTCGACTTCAAGAACGAGTTCGACGGCCAGACCATCTGCGGCCACCTGCGCATCGAGGGC
CACGCCTGCGGCCTGATCGGCAACAACGGACCGATCACCCCGCAGGGCGCGGCCAAGGCGGCGCAGTTCATC
CAACTCTGCGAACAGAGCAACACGCCGCTGCTGTTCCTGCACAACACCACCGGCTTCATGGTCGGCACCGAG
TCGGAGCGCCAGGGCGTGATCAAGCACGGCTCGAAGATGATCCAGGCGGTGGCCAACGCCCGCGTGCCCAAG
CTGACCCTGGTGGTCGGCGGCTCCTACGGCGCCGGCAACTACGCGATGTGCGGACGCGGCCTCGACCCGCGC
TTCATCTTCGCCTGGCCGAACAGTCGCACCGCGGTGATGGGCGGCGCCCAGGCCGGCAAGGTGCTGCGCATC
GTCACCGAGGAGAAACACGCCAAGGAAGGCAAGGAAGCCGACCCGAAGATGCTCGACATGCTGGAAACCGTC
ACCGCGCAGAAGCTCGACAGCCAGTCCACCGCGCTTTACGGCACCGCCAGCCTGTGGGACGACGGCCTGGTC
GACCCGCGCGACAGCCGCAGGCTGCTCGGCTACCTGCTGGATATCTGCGCGGAAGCCGAGGCGCGGCCGCTG
AAGGGCAACAGCTTCGGGGTCGCGAGGTTCTGA
Translation:
MPAIQSELDVNGEDFARNREAMLAAVAGFRELEQKVLDKAAEARPKFEKRGQLLPRERLALLLDPGAPFLEL
SSLAGYKLHDDKDGTQAGGGIIAGIGYIAGVRCLVSASNSAIKGGTISPTGLKKTLRLQQIAMENKLPVVTL
TESGGANLNYAAEIFVEGARGFANQARISAMGIPQVTVVHGSSTAGGAYQPGLSDYVVVVRGKAKMFLAGPP
LLKAATGEIASDEELGGAELHAQVAGTAEYLAENDADGVRLAREIVGMLPWNAQLPARPARSWREPLYPVEE
LLGVVPADPKKPYDVREIVARIADGSEFLDFKNEFDGQTICGHLRIEGHACGLIGNNGPITPQGAAKAAQFI
QLCEQSNTPLLFLHNTTGFMVGTESERQGVIKHGSKMIQAVANARVPKLTLVVGGSYGAGNYAMCGRGLDPR
FIFAWPNSRTAVMGGAQAGKVLRIVTEEKHAKEGKEADPKMLDMLETVTAQKLDSQSTALYGTASLWDDGLV
DPRDSRRLLGYLLDICAEAEARPLKGNSFGVARF*
AnnotationID:660GeneID:651
AnnotatorUID: diggins
Modification Date/Time: 2004-12-02 12:12:15
Gene Name:
Confidence Code:3
GeneProduct:putative biotin-dependent carboxylase
Cell Localization:()
Synonyms:mccB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:putative 3-methylcrotonyl-CoA carboxylase beta subunit
Functional Category Confidence Code:5
COGs:COG4799,pfam01039
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB16296.1| (AB039884) acetyl-CoA carboxylase carboxyltransferase [Myxococcus
           xanthus]
          Length = 538

 Score =  677 bits (1748), Expect = 0.0
 Identities = 332/537 (61%), Positives = 411/537 (76%)

>dbj|BAC46251.1| (AP005938) 3-methylcrotonyl-CoA carboxylase beta subunit
           [Bradyrhizobium japonicum USDA 110]
          Length = 538

 Score =  572 bits (1474), Expect = e-162
 Identities = 285/539 (52%), Positives = 377/539 (69%), Gaps = 4/539 (0%)

>gb|AAO90497.1| (AE016963) acyl CoA biotin-dependant carboxyltransferase [Coxiella
           burnetii RSA 493]
          Length = 535

 Score =  478 bits (1229), Expect = e-134
 Identities = 252/543 (46%), Positives = 346/543 (63%), Gaps = 15/543 (2%)








 
Structural Features:
COG4799, Acetyl-CoA_carboxylase, Acetyl-CoA carboxylase, carboxyltransferase component 
(subunits alpha and beta) [Lipid metabolism]

pfam01039, Carboxyl_trans, Carboxyl transferase domain








   
Genomic Context:






   
Comment:


















    ReferenceID:1305




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18447




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36166




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:651_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:651
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1102
                           PA2888_tr
                           translation of PA2888
                           538
                           99.62
                           99.99
                           0
                           2748.0
     

     
     
41763
                           gb|AAG06276.1|AE004715_2
                           (AE004715) probable biotin-dependent carboxylase [Pseudomonas aeruginosa PAO1]
                           538
                           99.62
                           99.99
                           0
                           2748.0
     

     
     
41764
                           dbj|BAB16296.1|
                           (AB039884) acetyl-CoA carboxylase carboxyltransferase [Myxococcus xanthus]
                           538
                           61.71
                           76.39
                           0
                           1748.0
     

     
     
41765
                           dbj|BAC46251.1|
                           (AP005938) 3-methylcrotonyl-CoA carboxylase beta subunit [Bradyrhizobium japonicum USDA 110]
                           540
                           52.77
                           69.81
                           4
                           1476.0
     

     
     
41766
                           emb|CAE27584.1|
                           (BX572599) putative acetyl/propionyl-CoA carboxylase [Rhodopseudomonas palustris CGA009]
                           540
                           52.40
                           69.25
                           2
                           1458.0
     

     






      

          
GC ORFID: 43653How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2888Glimmer Score: 

          
Start: 2625158Stop: 2626774

          
Length: 1617


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2888 translation of PA2888Homolog Bit Score 1063.0

          
Other Homologs:  t_PA2014 (ORF: BLASTX 470.0), psyr_15may02_Scaffold9_revised_gene8071 (ORF: BLASTX 445.0), t_PA2888 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGCGATCCAGTCGGAACTCGACGTCAACGGCGAGGACTTCGCCCGTAACCGCGAGGCCATGCTCGCC 
GCCGTGGCCGGCTTCCGCGAATTGGAGCAGAAGGTCCTGGACAAGGCCGCCGAGGCCAGGCCGAAGTTCGAG 
AAACGCGGACAACTGCTGCCGCGCGAACGCCTGGCGTTGCTGCTCGATCCGGGCGCGCCGTTCCTCGAACTG 
TCCTCGCTGGCCGGCTACAAGCTGCACGACGACAAGGACGGCACCCAGGCCGGCGGCGGGATCATCGCCGGG 
ATCGGCTACATCGCCGGGGTGCGCTGCCTgGTCAGTGCCAGCAACAGCGCGATCAAGGGCGGCACCATCTCC 
CCGACCGGGCTGAAGAAGACCCTGCGCCTGCAGCAGATCGCCATGGAGAACAAGCTGCCGGTGGTGACCCTC 
ACCGAAAGCGGCGGCGCCAACCTCAACTATGCGGCGGAGATCTTCGTCGAAGGTGCGCGCGGCTTCGCCAAC 
CAGGCGCGGATCTCCGCCATGGGCATTCCCCAGGTCACCGTGGTGCATGGTTCCAGCACCGCCGGCGGTGCC 
TACCAGCCGGGGCTGTCGGACTACGTGGTGGTGGTGCGCGGCAAGGCCAAGATGTTCCTCGCCGGGCCGCCG 
TTGCTCAAGGCCGCCACCGGCGAGATCGCCAGCGACGAGGAACTCGGCGGAGCCGAACTGCACGCGCAGGTC 
GCCGGCACCGCGGAATACCTGGCGGAAAACGACGCCGACGGCGTGCGCCTGGCCCGCGAGATCGTCGGCATG 
TTGCCGTGGAACGCACAACTGCCGGCGCGCCCGGCGCGTTCCTGGCGCGAACCGCTGTACCCGGTGGAGGAG 
CTGCTCGGGGTGGTTCCGGCCGACCCGAAGAAGCCCTACGACGTCCGCGAGATCGTCGCGCGCATCGCCGAC 
GGCTCCGAGTTCCTCGACTTCAAGAACGAGTTCGACGGCCAGACCATCTGCGGCCACCTGCGCATCGAGGGC 
CACGCCTGCGGCCTGATCGGCAACAACGGACCGATCACCCCGCAGGGCGCGGCCAAGGCGGCGCAGTTCATC 
CAACTCTGCGAACAGAGCAACACGCCGCTGCTGTTCCTGCACAACACCACCGGCTTCATGGTCGGCACCGAG 
TCGGAGCGCCAGGGCGTGATCAAGCACGGCTCGAAGATGATCCAGGCGGTGGCCAACGCCCGCGTGCCCAAG 
CTGACCCTGGTGGTCGGCGGCTCCTACGGCGCCGGCAACTACGCGATGTGCGGACGCGGCCTCGACCCGCGC 
TTCATCTTCGCCTGGCCGAACAGTCGCACCGCGGTGATGGGCGGCGCCCAGGCCGGCAAGGTGCTGCGCATC 
GTCACCGAGGAGAAACACGCCAAGGAAGGCAAGGAAGCCGACCCGAAGATGCTCGACATGCTGGAAACCGTC 
ACCGCGCAGAAGCTCGACAGCCAGTCCACCGCGCTTTACGGCACCGCCAGCCTGTGGGACGACGGCCTGGTC 
GACCCGCGCGACAGCCGCAGGCTGCTCGGCTACCTGCTGGATATCTGCGCGGAAGCCGAGGCGCGGCCGCTG 
AAGGGCAACAGCTTCGGGGTCGCGAGGTTCTGA