ViewGene
Locus Name:
GeneID:
Location:

GeneID:650
TrivialName: PA14_45100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45100
PAO1 Ortholog Locus:PA1494
Sequence Length:1656
Protein Length:551
Start: 4021687
Stop: 4023342
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04883.1|AE004578_5 (AE004578) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 546/551 (99%), Positives = 548/551 (99%)
Sequence:
GTGAATCGACTCGCCGCCTCTCCGCTCCTGTTCGCCGGCCTGTTCGCCAGCGCTCCGTTGCTGGCCGCGCCA
CAAGCGGTCGACAGCCGCATCAGCGCGGTCACCGTCTACGCCGACCGTGCCGTGGTCACCCGCACCGCCCGC
CTGCAATTGCCCAAGGGCCAGCATGAGATCGCCCTGGAGCAACTGCCCTTCCAGCTCGACGACGCCAGCCTG
CGCGCGTCCCTCGGCGCCAGCGCCGCCGCCACCCTGCTCGACGTCAGCAGCGCCGCGCAACGGGTCGAGCGC
CCGGACGACAACCGTGTGCAGCAACTCGACCAGCAACTGCGCGAGATAGACCGGCAACTGCGGGAAATCCAT
GACCGCGGCAGCGTGCTCGAAGCGCAGAAGAAGTTCCTCGCCGACATCCAGAGCGGCAGCACCCAGCCCGGC
AAGGATCGCCCCATGCCCGGCATCGACGAGCTGAAGAGCCTGCTGCAACTGACCGAAGGCAACCTCGAACGC
CTGCTCGCCGAGCAGCGCCAGCTGGACGACCGCGCCGCCGAACTGGAACAGCGCAAGCAGCAGTTGCAGGAG
CAGCGCGGCACCCTCAACGGCGACGGCAAGCGCTTCAAGCGCGCGGTCCTGCGGGTCGCCCTGGAGCAACCG
GCACAGGTCGAGGTGAAGCTCGACTACACCCTGCGCGACGCCTCCTGGCAGCCGACCTACGACGCGCGCCTG
CGCGACGGCGCGAAGACCATCGAACTGACCTACCAGGGCCTGGTCCGGCAGAGCAGCGGCGAAGACTGGACC
GACATCGACCTGACCCTCTCCACCGCCCGTCCGGCCCTGGGCGGCAACGTACCGCGGCTGAATCCCTGGATC
GTCGACATCGACGCGCCCAACGCCTACTACGGTGCCGAGATGGCCATGCAGGACGCTCCGGCGCCCATGCCG
CAAGCCGCGCCCATCGCCAGGACCTCGGCGAAGATGGCCATGCCGGCCTCGGCGCCGAAGCTGGCCGAGGCG
CGGCTCGCCACCGCGGAGGTCAGCAGCGGAGCCGCCAGCGCCTCTTTCCACATCCCCGTGCCGGCGACCCTG
AACAGCGACGGCAGCGCGCAGAAGGTCACCATCGCCCGCCTGGAAATGCCGGCCAAGCTGCGCTACCTGGCG
GCCCCGGCCCTGCGCGAAACCGCCTACCTGGAGGCGGAAACCCGCAACGACAGCGACTACCCGCTGCTCCCC
GGCACCCTGAATACCTTTCTCGGCAACAGCTTCGTCGCCAGCGGCCATCTGCGCGGGGTGATGCCCGGGGAA
AGCTTCGAACTGGCACTGGGCGCCGACGAGGGCATCGGCATCGAACGCAAGCTGGTCAAGCGCTACACCGAC
AGCAGCGGCCTGATCGGCAACCGCACGCGGGTCAACTACGAATTCCGCATCGACGTGCGCAACAACCACAAG
AACGCCGAACGCGTGCAGTTCGAGGACCAGTTGCCGGTCTCGCGCAACGAGCAGATCCAGGTCACCTTGCTG
GAACCCAAGGCGCAGGAAATCAAGCGCGAGGACGACGGCAAGCTGAAGTGGGACTGGACCCTGCAACCCGGC
GAGAAACGCAGCGCCGCCCTGAAGTTCAGCGTGGAGTATCCCAAGGACCTGGCGGTCAGCGGCCTCGACTAG
Translation:
MNRLAASPLLFAGLFASAPLLAAPQAVDSRISAVTVYADRAVVTRTARLQLPKGQHEIALEQLPFQLDDASL
RASLGASAAATLLDVSSAAQRVERPDDNRVQQLDQQLREIDRQLREIHDRGSVLEAQKKFLADIQSGSTQPG
KDRPMPGIDELKSLLQLTEGNLERLLAEQRQLDDRAAELEQRKQQLQEQRGTLNGDGKRFKRAVLRVALEQP
AQVEVKLDYTLRDASWQPTYDARLRDGAKTIELTYQGLVRQSSGEDWTDIDLTLSTARPALGGNVPRLNPWI
VDIDAPNAYYGAEMAMQDAPAPMPQAAPIARTSAKMAMPASAPKLAEARLATAEVSSGAASASFHIPVPATL
NSDGSAQKVTIARLEMPAKLRYLAAPALRETAYLEAETRNDSDYPLLPGTLNTFLGNSFVASGHLRGVMPGE
SFELALGADEGIGIERKLVKRYTDSSGLIGNRTRVNYEFRIDVRNNHKNAERVQFEDQLPVSRNEQIQVTLL
EPKAQEIKREDDGKLKWDWTLQPGEKRSAALKFSVEYPKDLAVSGLD*
AnnotationID:659GeneID:650
AnnotatorUID: diggins
Modification Date/Time: 2005-01-25 05:05:15
Gene Name:
Confidence Code:3
GeneProduct:putative mucoidy inhibitor A
Cell Localization:()
Synonyms:muiA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO33316.1|AF226874_1 (AF226874) mucoidy inhibitor A [Pseudomonas aeruginosa]
          Length = 551

 Score = 1061 bits (2745), Expect = 0.0
 Identities = 545/551 (98%), Positives = 547/551 (99%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14187




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18445




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37372




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:650_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:650
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1101
                           PA1494_tr
                           translation of PA1494
                           551
                           99.09
                           99.45
                           0
                           2750.0
     

     
     
41761
                           gb|AAG04883.1|AE004578_5
                           (AE004578) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           551
                           98.91
                           99.45
                           0
                           2747.0
     

     
     
41762
                           gb|AAO33316.1|AF226874_1
                           (AF226874) mucoidy inhibitor A [Pseudomonas aeruginosa]
                           551
                           98.72
                           99.27
                           0
                           2741.0
     

     






      

          
GC ORFID: 43652How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1494Glimmer Score: 

          
Start: 932222Stop: 930567

          
Length: 1656


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1494 translation of PA1494Homolog Bit Score 1063.0

          
Other Homologs:  t_PA1494 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAATCGACTCGCCGCCTCTCCGCTCCTGTTCGCCGGCCTGTTCGCCAGCGCTCCGTTGCTGGCCGCGCCA 
CAAGCGGTCGACAGCCGCATCAGCGCGGTCACCGTCTACGCCGACCGTGCCGTGGTCACCCGCACCGCCCGC 
CTGCAATTGCCCAAGGGCCAGCATGAGATCGCCCTGGAGCAACTGCCCTTCCAGCTCGACGACGCCAGCCTG 
CGCGCGTCCCTCGGCGCCAGCGCCGCCGCCACCCTGCTCGACGTCAGCAGCGCCGCGCAACGGGTCGAGCGC 
CCGGACGACAACCGTGTGCAGCAACTCGACCAGCAACTGCGCGAGATAGACCGGCAACTGCGGGAAATCCAT 
GACCGCGGCAGCGTGCTCGAAGCGCAGAAGAAGTTCCTCGCCGACATCCAGAGCGGCAGCACCCAGCCCGGC 
AAGGATCGCCCCATGCCCGGCATCGACGAGCTGAAGAGCCTGCTGCAACTGACCGAAGGCAACCTCGAACGC 
CTGCTCGCCGAGCAGCGCCAGCTGGACGACCGCGCCGCCGAACTGGAACAGCGCAAGCAGCAGTTGCAGGAG 
CAGCGCGGCACCCTCAACGGCGACGGCAAGCGCTTCAAGCGCGCGGTCCTGCGGGTCGCCCTGGAGCAACCG 
GCACAGGTCGAGGTGAAGCTCGACTACACCCTGCGCGACGCCTCCTGGCAGCCGACCTACGACGCGCGCCTG 
CGCGACGGCGCGAAGACCATCGAACTGACCTACCAGGGCCTGGTCCGGCAGAGCAGCGGCGAAGACTGGACC 
GACATCGACCTGACCCTCTCCACCGCCCGTCCGGCCCTGGGCGGCAACGTACCGCGGCTGAATCCCTGGATC 
GTCGACATCGACGCGCCCAACGCCTACTACGGTGCCGAGATGGCCATGCAGGACGCTCCGGCGCCCATGCCG 
CAAGCCGCGCCCATCGCCAGGACCTCGGCGAAGATGGCCATGCCGGCCTCGGCGCCGAAGCTGGCCGAGGCG 
CGGCTCGCCACCGCGGAGGTCAGCAGCGGAGCCGCCAGCGCCTCTTTCCACATCCCCGTGCCGGCGACCCTG 
AACAGCGACGGCAGCGCGCAGAAGGTCACCATCGCCCGCCTGGAAATGCCGGCCAAGCTGCGCTACCTGGCG 
GCCCCGGCCCTGCGCGAAACCGCCTACCTGGAGGCGGAAACCCGCAACGACAGCGACTACCCGCTGCTCCCC 
GGCACCCTGAATACCTTTCTCGGCAACAGCTTCGTCGCCAGCGGCCATCTGCGCGGGGTGATGCCCGGGGAA 
AGCTTCGAACTGGCACTGGGCGCCGACGAGGGCATCGGCATCGAACGCAAGCTGGTCAAGCGCTACACCGAC 
AGCAGCGGCCTGATCGGCAACCGCACGCGGGTCAACTACGAATTCCGCATCGACGTGCGCAACAACCACAAG 
AACGCCGAACGCGTGCAGTTCGAGGACCAGTTGCCGGTCTCGCGCAACGAGCAGATCCAGGTCACCTTGCTG 
GAACCCAAGGCGCAGGAAATCAAGCGCGAGGACGACGGCAAGCTGAAGTGGGACTGGACCCTGCAACCCGGC 
GAGAAACGCAGCGCCGCCCTGAAGTTCAGCGTGGAGTATCCCAAGGACCTGGCGGTCAGCGGCCTCGACTAG