ViewGene
Locus Name:
GeneID:
Location:

GeneID:6496
TrivialName: PA14_13900
AnnotatorUID:
Modification Date/Time:2006-08-22 20:08:33
LocusName:PA14_13900
PAO1 Ortholog Locus:
Sequence Length:402
Protein Length:133
Start: 1195158
Stop: 1194757
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07254.1|AE004804_2 (AE004804) probable DNA invertase [Pseudomonas aeruginosa PAO1]
Identities = 130/133 (97%), Positives = 131/133 (98%)
Sequence:
GTGGTCTGGCGGCTGGACCGGCTTGGCCGCTCGATCAAGGACCTGATCTACCTGGTCGAGCAATTGGAGGAT
GCCGGCGTGGGTCTGAAGAGACTCCAGGAGAACATCGACACCACATCCACCGGAGGGCGTTTGGTTTTCCAC
CTCTTTGCCGCGCTAGCCGAGTTCGAGCGCAACCTGATCAGTGAATGCACCCATGCGAGACTATCTGCAGCA
CGTGCTCGCGGTCGGCTGGGCGGCCGCAAGAAACGCCTGGATCCCGCCAAGCGCAAAGTCGCCCTGAAGCTC
TATCACGAGCGCCAATACACCGTGGTGGAGATCTGTCGGATGATGGGAATCGGCCGCTCGACGCTCTACAAC
TACATCACCGAGGCAGAACGGAATGCCCACCAGCAGGCGTAA
Translation:
MVWRLDRLGRSIKDLIYLVEQLEDAGVGLKRLQENIDTTSTGGRLVFHLFAALAEFERNLISECTHARLSAA
RARGRLGGRKKRLDPAKRKVALKLYHERQYTVVEICRMMGIGRSTLYNYITEAERNAHQQA*
AnnotationID:6497GeneID:6496
AnnotatorUID: danlee
Modification Date/Time: 2006-02-07 12:12:51
Gene Name:
Confidence Code:4
GeneProduct:fragment of putative DNA invertase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1961,pfam00239
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAF23988.1| (AF043544) putative transposase [Pseudomonas sp. TW3]
          Length = 191

 Score =  207 bits (527), Expect = 8e-54
 Identities = 102/133 (76%), Positives = 118/133 (88%)

>gb|AAC97179.1| (AF044847) putative DNA invertase [Acetobacter pasteurianus]
          Length = 193

 Score =  124 bits (312), Expect = 7e-29
 Identities = 61/122 (50%), Positives = 83/122 (68%)






 
Structural Features:
COG1961, PinR, Site-specific recombinases, DNA invertase Pin homologs 
[DNA replication, recombination, and repair]
CD-Length = 222 residues, only  64.0% aligned
Score = 93.3 bits (231), Expect = 2e-20
Identities = 56/142 (39%), Positives = 79/142 (55%), Gaps = 9/142 (6%)

pfam00239, Resolvase, Resolvase
CD-Length = 139 residues, only  56.8% aligned
Score = 72.2 bits (177), Expect = 3e-14
Identities = 41/79 (51%), Positives = 57/79 (72%), Gaps = 3/79 (3%)






   
Genomic Context:






   
Comment:
Confirmed frame-shift in upstream ORF (PA14_13910, GeneID 6495 )leads to premature stop codon in 
sequence corresponding to PAO1 PA3867.  This ORF and upstream ORF are possibly non-functional.


















    ReferenceID:16260




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30096




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31697




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6496_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6496
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7996
                           PA3867_tr
                           translation of PA3867
                           191
                           68.58
                           68.58
                           58
                           664.0
     

     
     
199910
                           gb|AAG07254.1|AE004804_2
                           (AE004804) probable DNA invertase [Pseudomonas aeruginosa PAO1]
                           191
                           68.58
                           68.58
                           58
                           664.0
     

     
     
199911
                           gb|AAF23988.1|
                           (AF043544) putative transposase [Pseudomonas sp. TW3]
                           191
                           53.92
                           61.78
                           58
                           530.0
     

     
     
199951
                           gb|AAO06175.1|
                           (AE015933) resolvase/integrase [Staphylococcus epidermidis ATCC 12228]
                           160
                           38.12
                           53.75
                           28
                           277.0
     

     
     
199950
                           gb|AAO06189.1|
                           (AE015934) DNA-invertase [Staphylococcus epidermidis ATCC 12228]
                           164
                           37.19
                           52.43
                           32
                           276.0
     

     






      

          
GC ORFID: 49498How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3758780Stop: 3759181

          
Length: 402


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3867 translation of PA3867Homolog Bit Score 260.0

          
Other Homologs:  t_PA3867 translation of PA3867 (BLASTP 260)

          
GC ORF Sequence

           
GTGGTCTGGCGGCTGGACCGGCTTGGCCGCTCGATCAAGGACCTGATCTACCTGGTCGAGCAATTGGAGGAT 
GCCGGCGTGGGTCTGAAGAGACTCCAGGAGAACATCGACACCACATCCACCGGAGGGCGTTTGGTTTTCCAC 
CTCTTTGCCGCGCTAGCCGAGTTCGAGCGCAACCTGATCAGTGAATGCACCCATGCGAGACTATCTGCAGCA 
CGTGCTCGCGGTCGGCTGGGCGGCCGCAAGAAACGCCTGGATCCCGCCAAGCGCAAAGTCGCCCTGAAGCTC 
TATCACGAGCGCCAATACACCGTGGTGGAGATCTGTCGGATGATGGGAATCGGCCGCTCGACGCTCTACAAC 
TACATCACCGAGGCAGAACGGAATGCCCACCAGCAGGCGTAA