ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6495

TrivialName: PA14_13910

AnnotatorUID:

Modification Date/Time: 2006-08-22 20:08:33

LocusName: PA14_13910

PAO1 Ortholog Locus:

Sequence Length: 141

Protein Length: 46

Start: 1195316

Stop: 1195176

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07254.1|AE004804_2 (AE004804) probable DNA invertase [Pseudomonas aeruginosa PAO1] Identities = 29/34 (85%), Positives = 32/34 (94%)

Sequence:

GTGCGCATTTCCACCGACGATCAACTACTGGACCTGCAACGCGATGCGATGGCCAAGGCGGGTTGCGAGCGA
GTGTTCGAAGACACTGCAGCGGCGCCAAGGCCGATCGAATCGGCCTGGCCGCGCTTCTCGCCAATCTAA

Translation:

MRISTDDQLLDLQRDAMAKAGCERVFEDTAAAPRPIESAWPRFSPI*

AnnotationID:6496 GeneID:6495

AnnotatorUID: danlee

Modification Date/Time: 2006-02-07 12:12:05

Gene Name:

Confidence Code: 4

GeneProduct: fragment of putative DNA invertase

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAF23988.1| (AF043544) putative transposase [Pseudomonas sp. TW3]
          Length = 191

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 26/33 (78%), Positives = 30/33 (90%)

>gb|AAN53084.1|AE015923_3 (AE015923) ISSod9, DNA-invertase [Shewanella oneidensis MR-1]
          Length = 185

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 21/33 (63%), Positives = 27/33 (81%)

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

Confirmed frame-shift leads to premature stop codon in sequence corresponding to PAO1 PA3867.  
This ORF and downstream ORF (PA14_13900, GeneID 6496) are possibly non-functional.

ReferenceID:16258

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:30094